Wall clock time and date at job start Mon Mar 30 2020 02:54:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.46711 * 2 1 4 4 C 1.53096 * 109.46208 * 119.99284 * 2 1 3 5 5 C 1.53334 * 109.59128 * 190.57970 * 4 2 1 6 6 C 1.50986 * 108.37314 * 309.72263 * 5 4 2 7 7 N 1.32255 * 127.77367 * 196.73473 * 6 5 4 8 8 C 1.33191 * 109.17244 * 179.88621 * 7 6 5 9 9 C 1.39998 * 125.92895 * 180.02562 * 8 7 6 10 10 H 1.08004 * 120.00092 * 179.97438 * 9 8 7 11 11 C 1.40233 * 120.00302 * 359.97438 * 9 8 7 12 12 N 1.30691 * 120.00010 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 120.00273 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.46842 * 0.02562 * 13 11 9 15 15 H 1.48506 * 109.47022 * 119.99878 * 13 11 9 16 16 H 1.48497 * 109.47436 * 239.99995 * 13 11 9 17 17 N 1.37773 * 108.14075 * 359.97438 * 8 7 6 18 18 C 1.46499 * 126.64272 * 180.08421 * 17 8 7 19 19 C 1.35672 * 106.71566 * 0.33992 * 17 8 7 20 20 C 1.50727 * 128.26251 * 180.17477 * 19 17 8 21 21 H 1.08992 * 109.47457 * 300.01293 * 1 2 3 22 22 H 1.09005 * 109.46615 * 60.01151 * 1 2 3 23 23 H 1.08996 * 109.47110 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.45343 * 70.54115 * 4 2 1 25 25 H 1.08997 * 109.43188 * 310.59930 * 4 2 1 26 26 H 1.09005 * 109.68156 * 190.00619 * 5 4 2 27 27 H 1.09000 * 109.71971 * 69.46435 * 5 4 2 28 28 H 0.96996 * 120.00323 * 179.97438 * 12 11 9 29 29 H 1.09002 * 109.47391 * 90.02297 * 18 17 8 30 30 H 1.09001 * 109.46813 * 330.02354 * 18 17 8 31 31 H 1.09004 * 109.47041 * 210.02481 * 18 17 8 32 32 H 1.08999 * 109.91090 * 76.29163 * 20 19 17 33 33 H 1.09002 * 109.56699 * 315.69393 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7216 1.2502 5 6 3.5503 -0.4977 1.3928 6 6 4.2070 -0.8271 0.0738 7 7 5.4877 -1.0630 -0.1571 8 6 5.6590 -1.3168 -1.4533 9 6 6.8761 -1.6128 -2.0786 10 1 6.9049 -1.8041 -3.1411 11 6 8.0580 -1.6608 -1.3253 12 7 8.0234 -1.4288 -0.0396 13 14 9.6819 -2.0565 -2.1595 14 1 9.4525 -2.2765 -3.6101 15 1 10.6228 -0.9226 -1.9740 16 1 10.2614 -3.2841 -1.5576 17 7 4.4304 -1.2385 -2.0718 18 6 4.1530 -1.4481 -3.4949 19 6 3.5280 -0.9242 -1.1087 20 6 2.0411 -0.7236 -1.2525 21 1 -0.3634 0.5140 0.8898 22 1 -0.3633 0.5137 -0.8902 23 1 -0.3633 -1.0276 0.0005 24 1 1.8383 -1.7890 1.1610 25 1 1.5303 -0.3280 2.1295 26 1 3.9459 -1.1487 2.1726 27 1 3.7451 0.5435 1.6501 28 1 8.8407 -1.4624 0.4815 29 1 3.9309 -2.5007 -3.6707 30 1 5.0246 -1.1578 -4.0815 31 1 3.2971 -0.8417 -3.7914 32 1 1.5439 -1.6888 -1.3481 33 1 1.8382 -0.1170 -2.1351 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260380039.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:57 Heat of formation + Delta-G solvation = 32.290875 kcal Electronic energy + Delta-G solvation = -15092.112965 eV Core-core repulsion = 12731.597094 eV Total energy + Delta-G solvation = -2360.515872 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.19093 -36.53622 -33.26742 -32.75445 -30.08995 -29.15966 -26.90180 -25.59179 -24.08757 -21.72832 -20.24167 -19.36417 -17.68603 -16.57597 -15.38336 -14.65454 -14.47335 -13.99027 -13.70446 -13.26753 -12.73898 -12.52767 -12.20343 -12.07931 -11.71644 -11.63105 -11.33598 -11.19591 -10.98029 -10.66645 -10.59204 -10.18006 -10.04681 -9.95214 -9.87514 -9.10358 -7.75909 -7.64833 -6.75318 -6.33275 -4.15768 3.06592 3.18698 3.22264 3.64798 4.05845 4.46255 4.70775 5.23790 5.28613 5.37323 5.62125 5.72087 5.79837 5.88626 6.05253 6.08470 6.10347 6.16067 6.17724 6.18864 6.30315 6.49259 6.52384 6.61482 6.67943 6.79488 6.96171 7.26761 7.47541 7.74175 8.20488 8.33487 8.66843 9.04050 9.41112 10.33159 10.60048 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.049386 B = 0.008158 C = 0.007108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.826936 B = 3431.284116 C = 3938.440934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.083 4.083 3 H 0.068 0.932 4 C -0.105 4.105 5 C -0.026 4.026 6 C 0.017 3.983 7 N -0.507 5.507 8 C 0.373 3.627 9 C -0.463 4.463 10 H 0.077 0.923 11 C 0.082 3.918 12 N -0.743 5.743 13 Si 0.909 3.091 14 H -0.265 1.265 15 H -0.276 1.276 16 H -0.275 1.275 17 N -0.503 5.503 18 C 0.101 3.899 19 C -0.151 4.151 20 C -0.008 4.008 21 H 0.051 0.949 22 H 0.049 0.951 23 H 0.051 0.949 24 H 0.058 0.942 25 H 0.055 0.945 26 H 0.063 0.937 27 H 0.058 0.942 28 H 0.270 0.730 29 H 0.047 0.953 30 H 0.071 0.929 31 H 0.056 0.944 32 H 0.048 0.952 33 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.754 1.140 -1.836 9.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.102 4.102 3 H 0.086 0.914 4 C -0.143 4.143 5 C -0.065 4.065 6 C -0.118 4.118 7 N -0.228 5.228 8 C 0.131 3.869 9 C -0.502 4.502 10 H 0.095 0.905 11 C -0.141 4.141 12 N -0.369 5.369 13 Si 0.734 3.266 14 H -0.189 1.189 15 H -0.201 1.201 16 H -0.201 1.201 17 N -0.192 5.192 18 C -0.044 4.044 19 C -0.263 4.263 20 C -0.047 4.047 21 H 0.070 0.930 22 H 0.068 0.932 23 H 0.070 0.930 24 H 0.077 0.923 25 H 0.074 0.926 26 H 0.082 0.918 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.066 0.934 30 H 0.090 0.910 31 H 0.075 0.925 32 H 0.066 0.934 33 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -8.096 1.153 -1.166 8.260 hybrid contribution 0.154 -0.239 -1.175 1.209 sum -7.942 0.913 -2.341 8.330 Atomic orbital electron populations 1.21837 0.95936 1.01349 1.01014 1.21073 0.94035 0.99801 0.95303 0.91359 1.21570 0.96030 1.00220 0.96462 1.19754 0.92504 1.00197 0.94022 1.20468 0.92126 1.06459 0.92714 1.70960 1.13534 1.25900 1.12400 1.20271 0.84011 0.96060 0.86572 1.18109 0.88926 1.47970 0.95204 0.90531 1.25675 0.99985 0.93882 0.94585 1.70031 1.28276 1.32576 1.05981 0.86272 0.81670 0.78536 0.80146 1.18855 1.20097 1.20088 1.44877 1.08414 1.59839 1.06051 1.21398 1.01080 1.00110 0.81791 1.20117 0.91523 1.24043 0.90593 1.19645 0.90378 0.98233 0.96399 0.92985 0.93176 0.92966 0.92344 0.92621 0.91849 0.92386 0.91905 0.93421 0.91001 0.92490 0.93384 0.93643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 9.16 37.16 0.34 -1.44 16 2 C -0.08 -1.33 2.69 -90.36 -0.24 -1.57 16 3 H 0.07 1.14 8.11 -51.93 -0.42 0.72 16 4 C -0.10 -1.74 5.19 -26.51 -0.14 -1.88 16 5 C -0.03 -0.55 6.30 -27.57 -0.17 -0.72 16 6 C 0.02 0.44 6.97 -82.83 -0.58 -0.14 16 7 N -0.51 -15.14 9.39 -8.75 -0.08 -15.23 16 8 C 0.37 10.75 7.44 -155.20 -1.15 9.59 16 9 C -0.46 -12.91 9.01 -38.17 -0.34 -13.25 16 10 H 0.08 1.98 7.17 -52.48 -0.38 1.60 16 11 C 0.08 2.21 5.50 -17.29 -0.10 2.11 16 12 N -0.74 -21.28 11.89 55.56 0.66 -20.62 16 13 Si 0.91 19.57 29.56 -169.99 -5.03 14.55 16 14 H -0.26 -5.52 7.11 56.52 0.40 -5.12 16 15 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 16 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 17 N -0.50 -12.50 3.20 -118.69 -0.38 -12.88 16 18 C 0.10 1.94 10.83 59.85 0.65 2.59 16 19 C -0.15 -3.58 6.76 -81.44 -0.55 -4.14 16 20 C -0.01 -0.15 5.27 -27.66 -0.15 -0.29 16 21 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 22 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.06 0.99 8.11 -51.93 -0.42 0.57 16 25 H 0.06 0.78 8.11 -51.93 -0.42 0.35 16 26 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 27 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 28 H 0.27 7.01 8.29 -40.82 -0.34 6.67 16 29 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.07 1.33 7.39 -51.93 -0.38 0.95 16 31 H 0.06 0.94 7.73 -51.93 -0.40 0.54 16 32 H 0.05 0.85 8.12 -51.93 -0.42 0.42 16 33 H 0.04 0.78 7.87 -51.93 -0.41 0.37 16 LS Contribution 270.25 15.07 4.07 4.07 Total: -1.00 -32.37 270.25 -8.11 -40.49 By element: Atomic # 1 Polarization: 3.68 SS G_CDS: -4.93 Total: -1.24 kcal Atomic # 6 Polarization: -6.71 SS G_CDS: -2.43 Total: -9.14 kcal Atomic # 7 Polarization: -48.92 SS G_CDS: 0.20 Total: -48.72 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.03 Total: 14.55 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -32.37 -8.11 -40.49 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260380039.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.777 kcal (2) G-P(sol) polarization free energy of solvation -32.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds