Wall clock time and date at job start Mon Mar 30 2020 03:33:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31591 * 1 3 3 Si 1.86807 * 119.99884 * 2 1 4 4 H 1.48500 * 109.47099 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46951 * 299.99996 * 3 2 1 6 6 H 1.48496 * 109.47049 * 59.99951 * 3 2 1 7 7 C 1.38769 * 120.00444 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00608 * 180.02562 * 7 2 1 9 9 N 1.36886 * 119.99971 * 0.02562 * 7 2 1 10 10 C 1.38822 * 120.00473 * 180.02562 * 9 7 2 11 11 C 1.38795 * 119.71127 * 359.97438 * 10 9 7 12 12 C 1.38602 * 118.62938 * 180.02562 * 11 10 9 13 13 S 1.76266 * 134.50879 * 179.97438 * 12 11 10 14 14 N 1.69439 * 96.11134 * 180.02562 * 13 12 11 15 15 C 1.28799 * 109.05421 * 0.02562 * 14 13 12 16 16 C 1.41310 * 119.91418 * 0.02562 * 12 11 10 17 17 C 1.40915 * 117.21100 * 359.97438 * 16 12 11 18 18 N 1.31067 * 120.79667 * 0.02562 * 17 16 12 19 19 H 0.96998 * 120.00006 * 359.97438 * 1 2 3 20 20 H 0.97003 * 119.99853 * 359.97438 * 9 7 2 21 21 H 1.07999 * 120.68719 * 0.02817 * 11 10 9 22 22 H 1.07997 * 121.07581 * 180.02562 * 15 14 13 23 23 H 1.07999 * 119.59747 * 179.72010 * 17 16 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2499 1.6178 0.0000 4 1 3.7099 1.3465 -0.0006 5 1 1.8911 2.3965 -1.2125 6 1 1.8911 2.3965 1.2125 7 6 2.0099 -1.2017 -0.0005 8 1 3.0899 -1.2018 -0.0001 9 7 1.3255 -2.3872 -0.0016 10 6 2.0196 -3.5895 -0.0016 11 6 3.4075 -3.5825 -0.0011 12 6 4.0778 -4.7957 -0.0016 13 16 5.7755 -5.2695 -0.0018 14 7 5.4965 -6.9407 -0.0034 15 6 4.2264 -7.1549 -0.0042 16 6 3.3464 -6.0048 -0.0033 17 6 1.9406 -5.9076 -0.0037 18 7 1.3488 -4.7381 -0.0031 19 1 -0.4850 0.8400 0.0004 20 1 0.3555 -2.3873 -0.0016 21 1 3.9540 -2.6510 -0.0002 22 1 3.8306 -8.1598 -0.0049 23 1 1.3437 -6.8076 -0.0095 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260412842.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:16 Heat of formation + Delta-G solvation = 41.829564 kcal Electronic energy + Delta-G solvation = -11975.778708 eV Core-core repulsion = 9721.337236 eV Total energy + Delta-G solvation = -2254.441472 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 221.032 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.04986 -38.34090 -36.65657 -33.88468 -32.74894 -30.19791 -27.14957 -24.96707 -24.28293 -22.17120 -20.14989 -19.34300 -17.89897 -17.29451 -16.68137 -15.95374 -15.55534 -15.45708 -15.15128 -14.76614 -14.24289 -13.73763 -13.14370 -13.09424 -12.53185 -12.12523 -12.10878 -12.02375 -11.41131 -11.19162 -10.77367 -10.26764 -9.39005 -8.71869 -8.61110 -5.95096 -0.16248 0.48135 0.58734 1.13212 1.31677 1.40589 1.54659 1.54862 2.13935 2.73453 2.90263 3.24808 3.78976 3.84410 4.15653 4.42725 4.74277 4.86317 5.01614 5.09973 5.28888 5.47758 5.76381 5.92552 6.49368 6.91505 7.16991 7.58890 8.44560 Molecular weight = 221.03amu Principal moments of inertia in cm(-1) A = 0.045976 B = 0.007630 C = 0.006559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.869328 B = 3669.074394 C = 4268.102466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C -0.013 4.013 3 Si 1.006 2.994 4 H -0.257 1.257 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.323 4.323 8 H 0.114 0.886 9 N -0.519 5.519 10 C 0.358 3.642 11 C -0.254 4.254 12 C -0.051 4.051 13 S 0.114 5.886 14 N -0.500 5.500 15 C 0.187 3.813 16 C -0.332 4.332 17 C 0.256 3.744 18 N -0.581 5.581 19 H 0.286 0.714 20 H 0.400 0.600 21 H 0.123 0.877 22 H 0.229 0.771 23 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.915 -7.040 -0.008 8.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.216 4.216 3 Si 0.828 3.172 4 H -0.180 1.180 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.454 4.454 8 H 0.131 0.869 9 N -0.121 5.121 10 C 0.114 3.886 11 C -0.290 4.290 12 C -0.176 4.176 13 S 0.262 5.738 14 N -0.312 5.312 15 C -0.020 4.020 16 C -0.351 4.351 17 C 0.079 3.921 18 N -0.299 5.299 19 H 0.095 0.905 20 H 0.235 0.765 21 H 0.140 0.860 22 H 0.245 0.755 23 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 5.188 -6.432 -0.009 8.264 hybrid contribution -1.168 0.915 0.002 1.484 sum 4.020 -5.517 -0.007 6.826 Atomic orbital electron populations 1.69789 1.07577 1.30443 1.46102 1.26387 0.96588 1.03407 0.95265 0.84657 0.78576 0.75638 0.78352 1.18012 1.19698 1.19686 1.20240 0.93875 0.82506 1.48742 0.86869 1.41019 1.08745 1.01978 1.60324 1.18307 0.88395 0.86075 0.95780 1.19870 0.92654 0.96145 1.20374 1.23351 0.98902 0.97301 0.98054 1.84508 1.05663 1.02365 1.81304 1.75971 1.19842 1.07395 1.27966 1.24138 0.87219 1.00697 0.89977 1.21033 0.97168 0.91486 1.25374 1.22873 0.89115 0.94653 0.85481 1.66791 1.41064 0.97927 1.24132 0.90452 0.76501 0.85950 0.75481 0.77791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -45.87 13.05 21.64 0.28 -45.59 14 2 C -0.01 -0.63 5.50 84.86 0.47 -0.16 14 3 Si 1.01 37.83 29.55 68.60 2.03 39.86 14 4 H -0.26 -9.27 7.11 99.48 0.71 -8.56 14 5 H -0.27 -10.00 7.11 99.48 0.71 -9.29 14 6 H -0.27 -9.99 7.11 99.48 0.71 -9.29 14 7 C -0.32 -15.99 9.54 84.03 0.80 -15.19 14 8 H 0.11 5.39 5.65 -2.91 -0.02 5.37 14 9 N -0.52 -25.50 5.44 -189.24 -1.03 -26.53 14 10 C 0.36 16.30 7.63 132.86 1.01 17.31 14 11 C -0.25 -11.13 9.35 22.49 0.21 -10.92 14 12 C -0.05 -2.01 6.76 23.11 0.16 -1.85 14 13 S 0.11 4.07 23.85 -56.49 -1.35 2.73 14 14 N -0.50 -16.34 11.90 -55.82 -0.66 -17.01 14 15 C 0.19 5.12 11.46 86.82 0.99 6.12 14 16 C -0.33 -11.05 6.17 -20.18 -0.12 -11.18 14 17 C 0.26 8.11 11.28 85.46 0.96 9.08 14 18 N -0.58 -23.58 10.30 -191.53 -1.97 -25.55 14 19 H 0.29 13.45 8.31 -92.71 -0.77 12.68 14 20 H 0.40 20.27 8.01 -92.71 -0.74 19.53 14 21 H 0.12 5.42 5.95 -2.91 -0.02 5.41 14 22 H 0.23 3.65 8.06 -2.91 -0.02 3.62 14 23 H 0.21 4.12 8.06 -2.91 -0.02 4.10 14 Total: -1.00 -57.62 227.14 2.31 -55.32 By element: Atomic # 1 Polarization: 23.05 SS G_CDS: 0.53 Total: 23.57 kcal Atomic # 6 Polarization: -11.28 SS G_CDS: 4.48 Total: -6.80 kcal Atomic # 7 Polarization: -111.29 SS G_CDS: -3.38 Total: -114.67 kcal Atomic # 14 Polarization: 37.83 SS G_CDS: 2.03 Total: 39.86 kcal Atomic # 16 Polarization: 4.07 SS G_CDS: -1.35 Total: 2.73 kcal Total: -57.62 2.31 -55.32 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260412842.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.146 kcal (2) G-P(sol) polarization free energy of solvation -57.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds