Wall clock time and date at job start Mon Mar 30 2020 03:13:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46898 * 109.47132 * 2 1 4 4 C 1.46911 * 110.99705 * 183.50768 * 3 2 1 5 5 H 1.08998 * 109.46548 * 177.17676 * 4 3 2 6 6 C 1.50699 * 109.47056 * 57.18009 * 4 3 2 7 7 H 1.08002 * 119.99992 * 240.00024 * 6 4 3 8 8 C 1.37880 * 120.00445 * 59.99610 * 6 4 3 9 9 N 1.31506 * 120.00312 * 180.02562 * 8 6 4 10 10 Si 1.86804 * 119.99675 * 0.02562 * 8 6 4 11 11 H 1.48503 * 109.46769 * 90.00061 * 10 8 6 12 12 H 1.48498 * 109.47109 * 209.99827 * 10 8 6 13 13 H 1.48501 * 109.47232 * 329.99967 * 10 8 6 14 14 C 1.50690 * 109.47210 * 297.17800 * 4 3 2 15 15 C 1.38675 * 120.42046 * 148.59145 * 14 4 3 16 16 C 1.38626 * 118.41886 * 179.78220 * 15 14 4 17 17 C 1.38223 * 119.16570 * 0.51554 * 16 15 14 18 18 C 1.50696 * 119.61877 * 179.70546 * 17 16 15 19 19 N 1.31858 * 120.76123 * 359.72268 * 17 16 15 20 20 C 1.31888 * 121.72447 * 0.02562 * 19 17 16 21 21 H 1.08995 * 109.47128 * 60.00225 * 1 2 3 22 22 H 1.09004 * 109.47297 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46968 * 300.00240 * 1 2 3 24 24 H 1.08999 * 109.47193 * 239.99272 * 2 1 3 25 25 H 1.09005 * 109.47125 * 119.99845 * 2 1 3 26 26 H 1.00894 * 111.00622 * 59.55474 * 3 2 1 27 27 H 0.97002 * 120.00251 * 180.02562 * 9 8 6 28 28 H 1.07998 * 120.78512 * 0.02562 * 15 14 4 29 29 H 1.08002 * 120.41689 * 180.26437 * 16 15 14 30 30 H 1.09000 * 109.46913 * 270.01684 * 18 17 16 31 31 H 1.08997 * 109.47546 * 30.02028 * 18 17 16 32 32 H 1.09002 * 109.47052 * 150.02389 * 18 17 16 33 33 H 1.08005 * 119.61509 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4858 1.4249 -0.0839 5 1 3.8187 2.4617 -0.1327 6 6 3.9383 0.6933 -1.3213 7 1 4.5888 -0.1644 -1.2340 8 6 3.5217 1.1188 -2.5649 9 7 3.9162 0.4800 -3.6446 10 14 2.3970 2.6026 -2.7160 11 1 3.2169 3.8342 -2.8437 12 1 1.5385 2.4526 -3.9184 13 1 1.5416 2.7006 -1.5061 14 6 4.0769 0.7643 1.1347 15 6 5.2892 0.0958 1.0525 16 6 5.7969 -0.4930 2.2002 17 6 5.0780 -0.4043 3.3774 18 6 5.6172 -1.0464 4.6296 19 7 3.9257 0.2354 3.4174 20 6 3.4149 0.8116 2.3466 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.8933 -0.5139 -0.8899 25 1 1.8934 -0.5138 0.8900 26 1 1.6903 1.8850 0.8120 27 1 3.6234 0.7795 -4.5195 28 1 5.8267 0.0389 0.1176 29 1 6.7404 -1.0180 2.1739 30 1 5.2553 -2.0725 4.6965 31 1 6.7067 -1.0467 4.5977 32 1 5.2793 -0.4846 5.5004 33 1 2.4685 1.3271 2.4181 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260428524.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:09 Heat of formation + Delta-G solvation = 37.685688 kcal Electronic energy + Delta-G solvation = -15054.601983 eV Core-core repulsion = 12694.320048 eV Total energy + Delta-G solvation = -2360.281935 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.88853 -36.51257 -32.71097 -32.24092 -31.70900 -29.93361 -26.96618 -26.19090 -22.87908 -22.53092 -21.40585 -19.79981 -16.76832 -16.37876 -15.41711 -14.83293 -14.62745 -14.28361 -14.06872 -13.50727 -13.37282 -12.88250 -12.60185 -12.20300 -12.06491 -11.87234 -11.35268 -11.21359 -10.99095 -10.59554 -10.40967 -10.26004 -9.96986 -9.36974 -9.14737 -8.85228 -8.56875 -8.09592 -7.10948 -6.06702 -4.15948 1.63112 1.89292 3.47394 3.58389 3.88934 4.29981 4.65697 4.69193 5.09046 5.16776 5.43106 5.45133 5.63396 5.67002 5.73112 5.82972 5.88936 5.92601 6.02863 6.14051 6.17474 6.37919 6.43812 6.71045 6.74603 6.81633 6.97118 7.13954 7.26894 7.53470 7.93162 8.30963 8.45255 8.56376 8.90011 9.57086 11.02059 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.033449 B = 0.009694 C = 0.008399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.882096 B = 2887.830830 C = 3333.043348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.059 3.941 3 N -0.673 5.673 4 C 0.217 3.783 5 H 0.056 0.944 6 C -0.524 4.524 7 H 0.075 0.925 8 C 0.087 3.913 9 N -0.897 5.897 10 Si 0.859 3.141 11 H -0.296 1.296 12 H -0.303 1.303 13 H -0.190 1.190 14 C -0.123 4.123 15 C -0.055 4.055 16 C -0.177 4.177 17 C 0.095 3.905 18 C -0.095 4.095 19 N -0.491 5.491 20 C 0.081 3.919 21 H 0.056 0.944 22 H 0.048 0.952 23 H 0.041 0.959 24 H 0.091 0.909 25 H 0.014 0.986 26 H 0.307 0.693 27 H 0.264 0.736 28 H 0.146 0.854 29 H 0.124 0.876 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.429 -0.599 11.006 11.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.070 4.070 3 N -0.303 5.303 4 C 0.109 3.891 5 H 0.074 0.926 6 C -0.561 4.561 7 H 0.093 0.907 8 C -0.117 4.117 9 N -0.534 5.534 10 Si 0.686 3.314 11 H -0.223 1.223 12 H -0.231 1.231 13 H -0.111 1.111 14 C -0.127 4.127 15 C -0.081 4.081 16 C -0.197 4.197 17 C -0.043 4.043 18 C -0.153 4.153 19 N -0.200 5.200 20 C -0.076 4.076 21 H 0.075 0.925 22 H 0.067 0.933 23 H 0.060 0.940 24 H 0.109 0.891 25 H 0.032 0.968 26 H 0.125 0.875 27 H 0.073 0.927 28 H 0.164 0.836 29 H 0.142 0.858 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -1.013 -0.490 10.944 11.002 hybrid contribution 0.227 0.288 -0.355 0.510 sum -0.786 -0.203 10.589 10.620 Atomic orbital electron populations 1.21785 0.97047 1.00394 1.01209 1.21767 0.93021 0.90855 1.01339 1.61720 1.11577 1.13865 1.43131 1.18663 0.83650 0.96186 0.90644 0.92613 1.20796 1.31385 1.15767 0.88179 0.90678 1.24954 0.94750 0.96848 0.95183 1.69940 1.44601 1.40588 0.98250 0.87292 0.82723 0.81417 0.79972 1.22341 1.23075 1.11101 1.22115 0.95475 0.97563 0.97580 1.21794 0.95175 0.92873 0.98275 1.21963 1.01364 1.02621 0.93781 1.21071 0.91466 0.96696 0.95099 1.20588 1.00155 1.00125 0.94411 1.67379 1.12012 1.09131 1.31501 1.22444 0.99385 0.97534 0.88208 0.92457 0.93338 0.93965 0.89075 0.96789 0.87531 0.92720 0.83618 0.85759 0.91197 0.91329 0.91166 0.83965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.42 10.20 37.16 0.38 -2.04 16 2 C 0.06 1.16 5.68 -3.82 -0.02 1.14 16 3 N -0.67 -13.44 2.87 -109.18 -0.31 -13.75 16 4 C 0.22 4.72 2.33 -70.02 -0.16 4.55 16 5 H 0.06 1.25 7.57 -51.93 -0.39 0.85 16 6 C -0.52 -13.57 7.02 -34.44 -0.24 -13.82 16 7 H 0.08 2.11 6.23 -52.49 -0.33 1.78 16 8 C 0.09 2.40 5.47 -17.82 -0.10 2.30 16 9 N -0.90 -26.60 13.96 55.43 0.77 -25.83 16 10 Si 0.86 20.75 26.94 -169.99 -4.58 16.17 16 11 H -0.30 -7.31 7.11 56.52 0.40 -6.90 16 12 H -0.30 -7.64 7.11 56.52 0.40 -7.24 16 13 H -0.19 -4.20 5.17 56.52 0.29 -3.91 16 14 C -0.12 -2.46 4.73 -104.49 -0.49 -2.95 16 15 C -0.06 -1.06 9.01 -39.28 -0.35 -1.41 16 16 C -0.18 -2.95 9.74 -39.44 -0.38 -3.33 16 17 C 0.09 1.56 6.78 -82.59 -0.56 1.00 16 18 C -0.10 -1.16 10.17 36.00 0.37 -0.80 16 19 N -0.49 -8.94 10.27 -9.47 -0.10 -9.04 16 20 C 0.08 1.50 9.16 -17.55 -0.16 1.34 16 21 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 22 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.09 2.11 6.87 -51.93 -0.36 1.75 16 25 H 0.01 0.28 6.39 -51.93 -0.33 -0.06 16 26 H 0.31 5.37 7.10 -39.30 -0.28 5.10 16 27 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 28 H 0.15 2.93 6.45 -52.49 -0.34 2.60 16 29 H 0.12 1.70 8.06 -52.49 -0.42 1.28 16 30 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.07 0.69 8.08 -51.93 -0.42 0.27 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.14 2.37 6.44 -52.48 -0.34 2.03 16 LS Contribution 265.94 15.07 4.01 4.01 Total: -1.00 -29.45 265.94 -6.51 -35.96 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -4.57 Total: 6.50 kcal Atomic # 6 Polarization: -12.28 SS G_CDS: -1.73 Total: -14.01 kcal Atomic # 7 Polarization: -48.98 SS G_CDS: 0.36 Total: -48.62 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -4.58 Total: 16.17 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -29.45 -6.51 -35.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260428524.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.644 kcal (2) G-P(sol) polarization free energy of solvation -29.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.958 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds