Wall clock time and date at job start Mon Mar 30 2020 03:13:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46893 * 109.47566 * 2 1 4 4 C 1.46896 * 111.00303 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.46972 * 325.00219 * 4 3 2 6 6 C 1.50703 * 109.47114 * 85.00205 * 4 3 2 7 7 H 1.08000 * 120.00060 * 35.11833 * 6 4 3 8 8 C 1.37877 * 119.99941 * 215.12793 * 6 4 3 9 9 N 1.31514 * 120.00255 * 0.67494 * 8 6 4 10 10 Si 1.86797 * 120.00013 * 180.67771 * 8 6 4 11 11 H 1.48500 * 109.46974 * 59.99922 * 10 8 6 12 12 H 1.48508 * 109.47367 * 179.97438 * 10 8 6 13 13 H 1.48493 * 109.47499 * 300.00017 * 10 8 6 14 14 C 1.50701 * 109.47362 * 204.99732 * 4 3 2 15 15 C 1.38676 * 120.41636 * 133.96342 * 14 4 3 16 16 C 1.38627 * 118.41977 * 180.02562 * 15 14 4 17 17 C 1.38225 * 119.16334 * 0.02562 * 16 15 14 18 18 C 1.50700 * 119.62237 * 180.02562 * 17 16 15 19 19 N 1.31856 * 120.76157 * 359.97438 * 17 16 15 20 20 C 1.31886 * 121.72594 * 359.70628 * 19 17 16 21 21 H 1.08997 * 109.47274 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.46449 * 299.99889 * 1 2 3 23 23 H 1.09004 * 109.47159 * 59.99737 * 1 2 3 24 24 H 1.09000 * 109.47029 * 239.99646 * 2 1 3 25 25 H 1.09004 * 109.47159 * 120.00263 * 2 1 3 26 26 H 1.00898 * 111.00274 * 303.95827 * 3 2 1 27 27 H 0.96998 * 120.00609 * 180.02562 * 9 8 6 28 28 H 1.08001 * 120.78844 * 0.02562 * 15 14 4 29 29 H 1.07997 * 120.41889 * 179.97438 * 16 15 14 30 30 H 1.09004 * 109.47218 * 89.99262 * 18 17 16 31 31 H 1.08997 * 109.46956 * 209.99397 * 18 17 16 32 32 H 1.09006 * 109.46657 * 329.99653 * 18 17 16 33 33 H 1.08001 * 119.62053 * 180.30596 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4882 1.4240 -0.0006 5 1 3.8741 0.5921 0.5885 6 6 3.9930 1.3139 -1.4163 7 1 3.4391 1.7689 -2.2241 8 6 5.1620 0.6321 -1.6802 9 7 5.8296 0.0666 -0.6983 10 14 5.7978 0.5118 -3.4325 11 1 6.0506 1.8759 -3.9621 12 1 7.0623 -0.2669 -3.4480 13 1 4.7864 -0.1688 -4.2805 14 6 3.9563 2.7246 0.5998 15 6 4.9735 2.7369 1.5423 16 6 5.3713 3.9564 2.0679 17 6 4.7449 5.1114 1.6385 18 6 5.1694 6.4428 2.2026 19 7 3.7808 5.0618 0.7403 20 6 3.3810 3.9203 0.2144 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3632 0.5139 0.8901 23 1 -0.3634 0.5139 -0.8900 24 1 1.8933 -0.5139 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 1.6443 1.9012 -0.7813 27 1 6.6522 -0.4127 -0.8838 28 1 5.4446 1.8182 1.8592 29 1 6.1600 4.0035 2.8041 30 1 5.9660 6.8608 1.5871 31 1 4.3183 7.1236 2.2068 32 1 5.5312 6.3068 3.2218 33 1 2.5915 3.9197 -0.5226 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260428542.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:12 Heat of formation + Delta-G solvation = 17.078147 kcal Electronic energy + Delta-G solvation = -14752.984542 eV Core-core repulsion = 12391.808997 eV Total energy + Delta-G solvation = -2361.175545 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.34176 -36.06261 -33.01827 -32.07697 -31.38006 -29.73053 -26.84874 -25.54162 -23.03091 -22.21831 -21.00298 -20.07915 -16.89045 -15.75693 -15.27942 -14.77127 -14.49832 -14.18758 -13.78062 -13.51514 -13.14518 -12.55386 -12.26478 -11.87566 -11.74240 -11.66554 -11.34526 -11.23131 -11.05504 -10.96803 -10.58075 -10.41402 -10.11815 -9.63753 -8.84423 -8.77420 -8.46682 -7.79118 -7.33017 -6.20233 -4.31981 2.08152 2.28582 3.20357 3.25196 3.28395 4.26203 4.70777 5.06102 5.13557 5.28935 5.47408 5.74052 5.76215 5.94626 5.96214 6.00981 6.09956 6.14337 6.22064 6.37102 6.46404 6.51908 6.64996 6.80628 6.83648 7.09693 7.14201 7.50945 7.61987 7.73151 7.95619 8.07457 8.55243 8.80720 8.89131 9.35599 10.81693 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.019222 B = 0.011040 C = 0.008019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.301148 B = 2535.725828 C = 3491.009007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.064 3.936 3 N -0.691 5.691 4 C 0.232 3.768 5 H 0.075 0.925 6 C -0.541 4.541 7 H 0.059 0.941 8 C 0.073 3.927 9 N -0.882 5.882 10 Si 0.893 3.107 11 H -0.275 1.275 12 H -0.285 1.285 13 H -0.275 1.275 14 C -0.059 4.059 15 C -0.075 4.075 16 C -0.177 4.177 17 C 0.080 3.920 18 C -0.091 4.091 19 N -0.495 5.495 20 C 0.102 3.898 21 H 0.048 0.952 22 H 0.054 0.946 23 H 0.047 0.953 24 H 0.033 0.967 25 H 0.058 0.942 26 H 0.325 0.675 27 H 0.266 0.734 28 H 0.129 0.871 29 H 0.117 0.883 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.936 3.537 3.585 5.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.066 4.066 3 N -0.321 5.321 4 C 0.123 3.877 5 H 0.093 0.907 6 C -0.579 4.579 7 H 0.077 0.923 8 C -0.131 4.131 9 N -0.518 5.518 10 Si 0.720 3.280 11 H -0.200 1.200 12 H -0.211 1.211 13 H -0.201 1.201 14 C -0.062 4.062 15 C -0.101 4.101 16 C -0.197 4.197 17 C -0.058 4.058 18 C -0.149 4.149 19 N -0.205 5.205 20 C -0.056 4.056 21 H 0.067 0.933 22 H 0.073 0.927 23 H 0.066 0.934 24 H 0.051 0.949 25 H 0.077 0.923 26 H 0.142 0.858 27 H 0.076 0.924 28 H 0.147 0.853 29 H 0.135 0.865 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -3.215 4.252 4.068 6.706 hybrid contribution 1.259 -1.232 -1.734 2.471 sum -1.956 3.020 2.335 4.289 Atomic orbital electron populations 1.21788 0.96770 1.00438 1.01462 1.21656 0.93305 0.91220 1.00369 1.60927 1.10584 1.12219 1.48347 1.18297 0.83257 0.90738 0.95378 0.90728 1.21617 1.08996 1.35036 0.92296 0.92320 1.24991 0.96466 0.94322 0.97357 1.69864 1.16425 1.34023 1.31503 0.86633 0.78290 0.78395 0.84664 1.20031 1.21074 1.20072 1.21434 0.94200 0.98430 0.92164 1.21454 0.95983 0.97587 0.95068 1.21749 1.01773 0.93501 1.02636 1.20897 0.94334 0.94931 0.95632 1.20531 1.01272 0.93463 0.99632 1.67347 1.13185 1.30303 1.09635 1.22279 0.98425 0.87156 0.97701 0.93281 0.92693 0.93396 0.94887 0.92311 0.85838 0.92419 0.85349 0.86454 0.91611 0.91426 0.91759 0.84022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 10.17 37.16 0.38 -1.84 16 2 C 0.06 1.22 6.20 -3.83 -0.02 1.19 16 3 N -0.69 -14.27 5.86 -109.19 -0.64 -14.91 16 4 C 0.23 5.50 2.32 -70.02 -0.16 5.33 16 5 H 0.07 1.97 6.79 -51.93 -0.35 1.61 16 6 C -0.54 -13.92 8.07 -34.44 -0.28 -14.19 16 7 H 0.06 1.50 7.75 -52.49 -0.41 1.10 16 8 C 0.07 1.94 5.46 -17.82 -0.10 1.84 16 9 N -0.88 -23.91 12.78 55.43 0.71 -23.20 16 10 Si 0.89 20.69 29.54 -169.99 -5.02 15.66 16 11 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 12 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 13 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 14 C -0.06 -1.35 4.94 -104.48 -0.52 -1.87 16 15 C -0.07 -1.62 9.81 -39.28 -0.39 -2.01 16 16 C -0.18 -3.37 9.74 -39.44 -0.38 -3.76 16 17 C 0.08 1.52 6.78 -82.59 -0.56 0.96 16 18 C -0.09 -1.31 10.17 36.01 0.37 -0.95 16 19 N -0.49 -10.46 10.27 -9.47 -0.10 -10.55 16 20 C 0.10 2.22 10.44 -17.55 -0.18 2.04 16 21 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 22 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 23 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.03 0.68 8.00 -51.93 -0.42 0.26 16 25 H 0.06 1.13 8.06 -51.93 -0.42 0.71 16 26 H 0.33 6.47 7.91 -39.29 -0.31 6.16 16 27 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 28 H 0.13 2.81 8.04 -52.49 -0.42 2.39 16 29 H 0.12 1.87 8.06 -52.49 -0.42 1.44 16 30 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.06 0.77 8.08 -51.93 -0.42 0.35 16 33 H 0.14 2.92 7.49 -52.49 -0.39 2.52 16 LS Contribution 283.08 15.07 4.27 4.27 Total: -1.00 -27.63 283.08 -7.44 -35.07 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -4.81 Total: 6.91 kcal Atomic # 6 Polarization: -11.40 SS G_CDS: -1.85 Total: -13.25 kcal Atomic # 7 Polarization: -48.63 SS G_CDS: -0.03 Total: -48.66 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -27.63 -7.44 -35.07 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260428542.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.149 kcal (2) G-P(sol) polarization free energy of solvation -27.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.071 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds