Wall clock time and date at job start Mon Mar 30 2020 03:13:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46893 * 109.47566 * 2 1 4 4 C 1.46896 * 111.00303 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.46972 * 325.00219 * 4 3 2 6 6 C 1.50703 * 109.47114 * 85.00205 * 4 3 2 7 7 H 1.08000 * 120.00060 * 35.11833 * 6 4 3 8 8 C 1.37877 * 119.99941 * 215.12793 * 6 4 3 9 9 N 1.31514 * 120.00255 * 0.67494 * 8 6 4 10 10 Si 1.86797 * 120.00013 * 180.67771 * 8 6 4 11 11 H 1.48500 * 109.46974 * 59.99922 * 10 8 6 12 12 H 1.48508 * 109.47367 * 179.97438 * 10 8 6 13 13 H 1.48493 * 109.47499 * 300.00017 * 10 8 6 14 14 C 1.50701 * 109.47362 * 204.99732 * 4 3 2 15 15 C 1.38676 * 120.41636 * 133.96342 * 14 4 3 16 16 C 1.38627 * 118.41977 * 180.02562 * 15 14 4 17 17 C 1.38225 * 119.16334 * 0.02562 * 16 15 14 18 18 C 1.50700 * 119.62237 * 180.02562 * 17 16 15 19 19 N 1.31856 * 120.76157 * 359.97438 * 17 16 15 20 20 C 1.31886 * 121.72594 * 359.70628 * 19 17 16 21 21 H 1.08997 * 109.47274 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.46449 * 299.99889 * 1 2 3 23 23 H 1.09004 * 109.47159 * 59.99737 * 1 2 3 24 24 H 1.09000 * 109.47029 * 239.99646 * 2 1 3 25 25 H 1.09004 * 109.47159 * 120.00263 * 2 1 3 26 26 H 1.00898 * 111.00274 * 303.95827 * 3 2 1 27 27 H 0.96998 * 120.00609 * 180.02562 * 9 8 6 28 28 H 1.08001 * 120.78844 * 0.02562 * 15 14 4 29 29 H 1.07997 * 120.41889 * 179.97438 * 16 15 14 30 30 H 1.09004 * 109.47218 * 89.99262 * 18 17 16 31 31 H 1.08997 * 109.46956 * 209.99397 * 18 17 16 32 32 H 1.09006 * 109.46657 * 329.99653 * 18 17 16 33 33 H 1.08001 * 119.62053 * 180.30596 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4882 1.4240 -0.0006 5 1 3.8741 0.5921 0.5885 6 6 3.9930 1.3139 -1.4163 7 1 3.4391 1.7689 -2.2241 8 6 5.1620 0.6321 -1.6802 9 7 5.8296 0.0666 -0.6983 10 14 5.7978 0.5118 -3.4325 11 1 6.0506 1.8759 -3.9621 12 1 7.0623 -0.2669 -3.4480 13 1 4.7864 -0.1688 -4.2805 14 6 3.9563 2.7246 0.5998 15 6 4.9735 2.7369 1.5423 16 6 5.3713 3.9564 2.0679 17 6 4.7449 5.1114 1.6385 18 6 5.1694 6.4428 2.2026 19 7 3.7808 5.0618 0.7403 20 6 3.3810 3.9203 0.2144 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3632 0.5139 0.8901 23 1 -0.3634 0.5139 -0.8900 24 1 1.8933 -0.5139 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 1.6443 1.9012 -0.7813 27 1 6.6522 -0.4127 -0.8838 28 1 5.4446 1.8182 1.8592 29 1 6.1600 4.0035 2.8041 30 1 5.9660 6.8608 1.5871 31 1 4.3183 7.1236 2.2068 32 1 5.5312 6.3068 3.2218 33 1 2.5915 3.9197 -0.5226 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260428542.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:12 Heat of formation + Delta-G solvation = -0.118078 kcal Electronic energy + Delta-G solvation = -14753.730226 eV Core-core repulsion = 12391.808997 eV Total energy + Delta-G solvation = -2361.921229 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.95395 -37.76220 -34.75705 -33.77495 -32.96692 -31.24762 -28.29712 -27.38339 -24.72068 -23.79371 -22.55508 -21.78106 -18.84659 -17.38135 -16.89813 -16.65029 -16.10329 -15.75942 -15.30999 -15.02690 -14.69951 -14.20436 -13.75883 -13.48823 -13.16915 -13.09464 -12.95129 -12.84364 -12.73671 -12.52438 -12.18289 -12.04916 -11.83687 -11.51810 -10.75329 -10.44553 -10.16660 -9.41283 -9.09131 -8.16982 -6.36438 0.48154 0.62787 1.35442 1.36801 1.43301 2.33697 3.01156 3.17397 3.64106 3.69052 4.05933 4.31280 4.33229 4.45075 4.57417 4.62742 4.78180 4.86449 4.87894 4.89734 4.99260 5.10913 5.20136 5.29733 5.33623 5.40832 5.49704 5.58807 5.82538 6.01886 6.09918 6.28750 6.81328 6.89190 7.26964 7.33805 8.81557 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.019222 B = 0.011040 C = 0.008019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.301148 B = 2535.725828 C = 3491.009007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.063 3.937 3 N -0.686 5.686 4 C 0.242 3.758 5 H 0.040 0.960 6 C -0.549 4.549 7 H 0.055 0.945 8 C 0.027 3.973 9 N -0.908 5.908 10 Si 0.948 3.052 11 H -0.276 1.276 12 H -0.283 1.283 13 H -0.269 1.269 14 C -0.085 4.085 15 C -0.092 4.092 16 C -0.172 4.172 17 C 0.078 3.922 18 C -0.088 4.088 19 N -0.507 5.507 20 C 0.094 3.906 21 H 0.070 0.930 22 H 0.060 0.940 23 H 0.056 0.944 24 H 0.011 0.989 25 H 0.048 0.952 26 H 0.330 0.670 27 H 0.265 0.735 28 H 0.116 0.884 29 H 0.154 0.846 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.093 0.907 33 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.035 4.898 3.837 6.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.066 4.066 3 N -0.315 5.315 4 C 0.132 3.868 5 H 0.058 0.942 6 C -0.588 4.588 7 H 0.073 0.927 8 C -0.175 4.175 9 N -0.546 5.546 10 Si 0.774 3.226 11 H -0.202 1.202 12 H -0.208 1.208 13 H -0.194 1.194 14 C -0.088 4.088 15 C -0.118 4.118 16 C -0.192 4.192 17 C -0.060 4.060 18 C -0.145 4.145 19 N -0.217 5.217 20 C -0.063 4.063 21 H 0.089 0.911 22 H 0.079 0.921 23 H 0.075 0.925 24 H 0.029 0.971 25 H 0.067 0.933 26 H 0.147 0.853 27 H 0.074 0.926 28 H 0.134 0.866 29 H 0.171 0.829 30 H 0.099 0.901 31 H 0.092 0.908 32 H 0.112 0.888 33 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -3.337 5.613 4.315 7.827 hybrid contribution 1.284 -1.603 -1.727 2.684 sum -2.053 4.009 2.588 5.195 Atomic orbital electron populations 1.21685 0.93254 1.02117 1.02141 1.21719 0.96173 0.89942 0.98812 1.60929 1.08921 1.13251 1.48412 1.18011 0.84629 0.90229 0.93903 0.94187 1.21866 1.08951 1.34625 0.93330 0.92667 1.25664 0.96872 0.94390 1.00531 1.69978 1.16733 1.34944 1.32948 0.85761 0.77850 0.78118 0.80870 1.20176 1.20798 1.19434 1.21382 0.95458 0.98244 0.93723 1.21548 0.96109 0.98525 0.95627 1.22108 1.02137 0.92306 1.02611 1.21749 0.92888 0.97105 0.94230 1.20656 1.01963 0.90692 1.01228 1.67441 1.14149 1.29688 1.10429 1.22317 0.98756 0.87148 0.98091 0.91141 0.92121 0.92519 0.97071 0.93341 0.85294 0.92590 0.86559 0.82860 0.90140 0.90794 0.88806 0.83637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.86 10.17 71.98 0.73 -3.13 16 2 C 0.06 2.43 6.20 86.30 0.53 2.96 16 3 N -0.69 -28.76 5.86 -499.37 -2.92 -31.69 16 4 C 0.24 11.81 2.32 43.42 0.10 11.91 16 5 H 0.04 2.22 6.79 -2.39 -0.02 2.20 16 6 C -0.55 -28.84 8.07 25.60 0.21 -28.64 16 7 H 0.06 2.87 7.75 -2.91 -0.02 2.85 16 8 C 0.03 1.45 5.46 84.65 0.46 1.92 16 9 N -0.91 -50.55 12.78 21.45 0.27 -50.28 16 10 Si 0.95 42.80 29.54 68.60 2.03 44.82 16 11 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 12 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 13 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 14 C -0.09 -3.95 4.94 -19.77 -0.10 -4.05 16 15 C -0.09 -4.01 9.81 22.47 0.22 -3.79 16 16 C -0.17 -6.25 9.74 22.36 0.22 -6.03 16 17 C 0.08 2.80 6.78 42.55 0.29 3.09 16 18 C -0.09 -2.19 10.17 71.24 0.72 -1.46 16 19 N -0.51 -20.75 10.27 -183.89 -1.89 -22.64 16 20 C 0.09 4.07 10.44 84.67 0.88 4.96 16 21 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 22 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 23 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 24 H 0.01 0.47 8.00 -2.39 -0.02 0.45 16 25 H 0.05 1.92 8.06 -2.38 -0.02 1.91 16 26 H 0.33 13.23 7.91 -89.70 -0.71 12.52 16 27 H 0.26 14.13 8.31 -92.71 -0.77 13.36 16 28 H 0.12 5.27 8.04 -2.91 -0.02 5.25 16 29 H 0.15 4.36 8.06 -2.91 -0.02 4.34 16 30 H 0.08 1.82 8.14 -2.38 -0.02 1.80 16 31 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.09 1.80 8.08 -2.38 -0.02 1.78 16 33 H 0.15 6.02 7.49 -2.91 -0.02 6.00 16 Total: -1.00 -59.73 283.08 2.14 -57.59 By element: Atomic # 1 Polarization: 24.07 SS G_CDS: 0.38 Total: 24.45 kcal Atomic # 6 Polarization: -26.54 SS G_CDS: 4.27 Total: -22.27 kcal Atomic # 7 Polarization: -100.06 SS G_CDS: -4.54 Total: -104.60 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.82 kcal Total: -59.73 2.14 -57.59 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260428542.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.476 kcal (2) G-P(sol) polarization free energy of solvation -59.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds