Wall clock time and date at job start Mon Mar 30 2020 03:31:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30852 * 1 3 3 Si 1.86799 * 120.00032 * 2 1 4 4 H 1.48507 * 109.47124 * 240.00180 * 3 2 1 5 5 H 1.48499 * 109.46891 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47491 * 119.99927 * 3 2 1 7 7 C 1.39952 * 120.00008 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99603 * 179.97438 * 7 2 1 9 9 C 1.40622 * 120.00235 * 0.02562 * 7 2 1 10 10 N 1.30904 * 122.01170 * 0.02562 * 9 7 2 11 11 S 1.55945 * 111.61498 * 179.73086 * 10 9 7 12 12 C 1.76274 * 97.73557 * 0.02562 * 11 10 9 13 13 C 1.38712 * 133.85462 * 180.02562 * 12 11 10 14 14 C 1.37996 * 119.80074 * 179.97438 * 13 12 11 15 15 C 1.38624 * 120.18781 * 0.02562 * 14 13 12 16 16 C 1.38188 * 120.74593 * 359.97438 * 15 14 13 17 17 O 1.35804 * 120.03897 * 180.02562 * 16 15 14 18 18 C 1.40435 * 105.36746 * 359.97438 * 12 11 10 19 19 H 0.96992 * 120.00265 * 0.02562 * 1 2 3 20 20 H 1.07997 * 120.09876 * 359.92928 * 13 12 11 21 21 H 1.07999 * 119.90930 * 179.97438 * 14 13 12 22 22 H 1.08000 * 119.62328 * 179.97438 * 15 14 13 23 23 H 0.96701 * 114.00533 * 89.99684 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 3.0963 1.6964 -1.2126 5 1 1.2775 2.7464 -0.0006 6 1 3.0963 1.6965 1.2125 7 6 2.0083 -1.2120 -0.0005 8 1 3.0883 -1.2119 -0.0010 9 6 1.3052 -2.4299 -0.0016 10 7 -0.0030 -2.4759 -0.0027 11 16 -0.5261 -3.9449 -0.0105 12 6 1.0397 -4.7544 -0.0130 13 6 1.4341 -6.0843 -0.0196 14 6 2.7772 -6.4013 -0.0202 15 6 3.7309 -5.3953 -0.0136 16 6 3.3550 -4.0655 -0.0069 17 8 4.3014 -3.0916 -0.0010 18 6 1.9922 -3.7224 -0.0074 19 1 -0.4850 0.8400 -0.0004 20 1 0.6923 -6.8692 -0.0236 21 1 3.0862 -7.4361 -0.0250 22 1 4.7795 -5.6538 -0.0137 23 1 4.5763 -2.8048 -0.8827 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260459422.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:30 Heat of formation + Delta-G solvation = 1.044017 kcal Electronic energy + Delta-G solvation = -12410.810365 eV Core-core repulsion = 10122.307548 eV Total energy + Delta-G solvation = -2288.502817 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 221.025 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.17302 -36.34740 -35.45636 -32.78688 -29.39892 -28.79832 -27.11247 -22.64215 -21.94210 -20.19407 -18.12454 -17.18828 -16.19991 -15.17855 -14.88521 -14.67104 -14.06047 -13.71678 -13.04611 -12.82934 -11.91462 -11.49486 -11.34688 -11.17686 -10.95735 -10.84627 -10.22720 -9.82741 -9.34574 -9.31647 -8.48573 -8.45460 -7.97858 -6.78953 -6.56992 -4.49666 1.69841 1.88678 2.91137 3.00566 3.08024 3.10627 3.76303 3.92610 4.21200 4.31749 4.88513 5.30390 5.45796 5.56561 5.81807 6.04841 6.34355 6.53733 6.86715 6.96082 7.01493 7.13494 7.37043 7.91787 8.29726 8.39536 8.67579 9.11725 10.27888 Molecular weight = 221.03amu Principal moments of inertia in cm(-1) A = 0.034081 B = 0.011984 C = 0.008901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.376057 B = 2335.848182 C = 3144.857165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.727 5.727 2 C 0.062 3.938 3 Si 0.916 3.084 4 H -0.264 1.264 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.403 4.403 8 H 0.098 0.902 9 C 0.246 3.754 10 N -0.562 5.562 11 S 0.173 5.827 12 C -0.167 4.167 13 C -0.107 4.107 14 C -0.099 4.099 15 C -0.182 4.182 16 C 0.166 3.834 17 O -0.491 6.491 18 C -0.135 4.135 19 H 0.276 0.724 20 H 0.117 0.883 21 H 0.120 0.880 22 H 0.120 0.880 23 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.162 -5.718 -1.674 7.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.353 5.353 2 C -0.163 4.163 3 Si 0.740 3.260 4 H -0.189 1.189 5 H -0.204 1.204 6 H -0.188 1.188 7 C -0.446 4.446 8 H 0.116 0.884 9 C 0.089 3.911 10 N -0.391 5.391 11 S 0.327 5.673 12 C -0.288 4.288 13 C -0.131 4.131 14 C -0.121 4.121 15 C -0.205 4.205 16 C 0.118 3.882 17 O -0.301 6.301 18 C -0.150 4.150 19 H 0.087 0.913 20 H 0.135 0.865 21 H 0.138 0.862 22 H 0.138 0.862 23 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 2.580 -5.256 -1.062 5.951 hybrid contribution 2.286 0.770 -0.457 2.455 sum 4.866 -4.486 -1.519 6.791 Atomic orbital electron populations 1.70008 1.07286 1.28255 1.29756 1.26035 0.94917 1.01257 0.94080 0.86236 0.79836 0.79972 0.79921 1.18908 1.20365 1.18828 1.19276 0.94807 0.88018 1.42518 0.88371 1.18961 0.86708 0.91036 0.94381 1.73071 1.13906 1.09442 1.42667 1.81071 1.11249 0.97304 1.77707 1.24498 1.03300 0.96963 1.04065 1.20082 0.95530 0.93337 1.04159 1.20801 0.92425 0.98193 1.00665 1.20963 0.99485 0.91701 1.08383 1.17995 0.85379 0.87004 0.97822 1.84742 1.56879 1.55420 1.33019 1.20920 0.93475 0.94547 1.06010 0.91300 0.86495 0.86229 0.86168 0.75893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -20.09 11.64 55.55 0.65 -19.44 14 2 C 0.06 1.60 5.50 -17.33 -0.10 1.50 14 3 Si 0.92 18.89 29.56 -169.99 -5.02 13.86 14 4 H -0.26 -5.26 7.11 56.52 0.40 -4.86 14 5 H -0.28 -5.64 7.11 56.52 0.40 -5.24 14 6 H -0.26 -5.39 7.11 56.52 0.40 -4.99 14 7 C -0.40 -10.79 9.03 -38.04 -0.34 -11.13 14 8 H 0.10 2.42 6.01 -52.48 -0.32 2.10 14 9 C 0.25 6.83 6.58 -84.09 -0.55 6.28 14 10 N -0.56 -16.12 8.91 27.73 0.25 -15.87 14 11 S 0.17 4.20 23.35 -107.50 -2.51 1.69 14 12 C -0.17 -3.80 6.70 -38.58 -0.26 -4.06 14 13 C -0.11 -1.98 10.07 -39.49 -0.40 -2.38 14 14 C -0.10 -1.62 10.04 -39.53 -0.40 -2.02 14 15 C -0.18 -3.19 9.93 -39.46 -0.39 -3.58 14 16 C 0.17 3.44 6.75 -38.73 -0.26 3.18 14 17 O -0.49 -9.32 11.47 -19.13 -0.22 -9.54 14 18 C -0.13 -3.29 6.11 -104.93 -0.64 -3.93 14 19 H 0.28 6.94 8.30 -40.82 -0.34 6.60 14 20 H 0.12 1.84 8.06 -52.49 -0.42 1.42 14 21 H 0.12 1.51 8.06 -52.49 -0.42 1.08 14 22 H 0.12 1.74 8.06 -52.49 -0.42 1.32 14 23 H 0.39 5.52 9.06 45.56 0.41 5.94 14 LS Contribution 224.50 15.07 3.38 3.38 Total: -1.00 -31.55 224.50 -7.12 -38.67 By element: Atomic # 1 Polarization: 3.69 SS G_CDS: -0.31 Total: 3.38 kcal Atomic # 6 Polarization: -12.79 SS G_CDS: -3.34 Total: -16.13 kcal Atomic # 7 Polarization: -36.21 SS G_CDS: 0.89 Total: -35.32 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: -0.22 Total: -9.54 kcal Atomic # 14 Polarization: 18.89 SS G_CDS: -5.02 Total: 13.86 kcal Atomic # 16 Polarization: 4.20 SS G_CDS: -2.51 Total: 1.69 kcal Total LS contribution 3.38 Total: 3.38 kcal Total: -31.55 -7.12 -38.67 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260459422.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.717 kcal (2) G-P(sol) polarization free energy of solvation -31.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds