Wall clock time and date at job start Mon Mar 30 2020 03:31:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30852 * 1 3 3 Si 1.86799 * 120.00032 * 2 1 4 4 H 1.48507 * 109.47124 * 240.00180 * 3 2 1 5 5 H 1.48499 * 109.46891 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47491 * 119.99927 * 3 2 1 7 7 C 1.39952 * 120.00008 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99603 * 179.97438 * 7 2 1 9 9 C 1.40622 * 120.00235 * 0.02562 * 7 2 1 10 10 N 1.30904 * 122.01170 * 0.02562 * 9 7 2 11 11 S 1.55945 * 111.61498 * 179.73086 * 10 9 7 12 12 C 1.76274 * 97.73557 * 0.02562 * 11 10 9 13 13 C 1.38712 * 133.85462 * 180.02562 * 12 11 10 14 14 C 1.37996 * 119.80074 * 179.97438 * 13 12 11 15 15 C 1.38624 * 120.18781 * 0.02562 * 14 13 12 16 16 C 1.38188 * 120.74593 * 359.97438 * 15 14 13 17 17 O 1.35804 * 120.03897 * 180.02562 * 16 15 14 18 18 C 1.40435 * 105.36746 * 359.97438 * 12 11 10 19 19 H 0.96992 * 120.00265 * 0.02562 * 1 2 3 20 20 H 1.07997 * 120.09876 * 359.92928 * 13 12 11 21 21 H 1.07999 * 119.90930 * 179.97438 * 14 13 12 22 22 H 1.08000 * 119.62328 * 179.97438 * 15 14 13 23 23 H 0.96701 * 114.00533 * 89.99684 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 3.0963 1.6964 -1.2126 5 1 1.2775 2.7464 -0.0006 6 1 3.0963 1.6965 1.2125 7 6 2.0083 -1.2120 -0.0005 8 1 3.0883 -1.2119 -0.0010 9 6 1.3052 -2.4299 -0.0016 10 7 -0.0030 -2.4759 -0.0027 11 16 -0.5261 -3.9449 -0.0105 12 6 1.0397 -4.7544 -0.0130 13 6 1.4341 -6.0843 -0.0196 14 6 2.7772 -6.4013 -0.0202 15 6 3.7309 -5.3953 -0.0136 16 6 3.3550 -4.0655 -0.0069 17 8 4.3014 -3.0916 -0.0010 18 6 1.9922 -3.7224 -0.0074 19 1 -0.4850 0.8400 -0.0004 20 1 0.6923 -6.8692 -0.0236 21 1 3.0862 -7.4361 -0.0250 22 1 4.7795 -5.6538 -0.0137 23 1 4.5763 -2.8048 -0.8827 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260459422.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:30 Heat of formation + Delta-G solvation = -21.605312 kcal Electronic energy + Delta-G solvation = -12411.792514 eV Core-core repulsion = 10122.307548 eV Total energy + Delta-G solvation = -2289.484966 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 221.025 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.76637 -38.00860 -37.08167 -34.68911 -30.99969 -30.39489 -29.05628 -24.34329 -23.47754 -21.95628 -19.67773 -19.13826 -17.78446 -16.88010 -16.44260 -16.34284 -15.65294 -15.31969 -14.71352 -14.59182 -13.48079 -13.04805 -13.01653 -12.97583 -12.54549 -12.41406 -11.91966 -11.49953 -11.15467 -11.09780 -10.39360 -10.11196 -9.63948 -8.59439 -8.47395 -6.49719 0.11426 0.36548 1.18282 1.35981 1.38692 1.52752 1.98259 2.19008 2.33839 2.71685 3.32554 3.47934 3.96840 4.19740 4.39818 4.58609 4.84133 5.01660 5.22155 5.34270 5.47903 5.52526 5.93977 5.98820 6.46609 6.70179 6.94096 7.19201 8.40004 Molecular weight = 221.03amu Principal moments of inertia in cm(-1) A = 0.034081 B = 0.011984 C = 0.008901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.376057 B = 2335.848182 C = 3144.857165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.776 5.776 2 C 0.013 3.987 3 Si 0.998 3.002 4 H -0.249 1.249 5 H -0.274 1.274 6 H -0.258 1.258 7 C -0.433 4.433 8 H 0.111 0.889 9 C 0.218 3.782 10 N -0.613 5.613 11 S 0.150 5.850 12 C -0.178 4.178 13 C -0.110 4.110 14 C -0.075 4.075 15 C -0.166 4.166 16 C 0.154 3.846 17 O -0.499 6.499 18 C -0.180 4.180 19 H 0.279 0.721 20 H 0.148 0.852 21 H 0.176 0.824 22 H 0.161 0.839 23 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.868 -7.389 -1.819 10.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.402 5.402 2 C -0.207 4.207 3 Si 0.817 3.183 4 H -0.173 1.173 5 H -0.199 1.199 6 H -0.182 1.182 7 C -0.476 4.476 8 H 0.129 0.871 9 C 0.060 3.940 10 N -0.442 5.442 11 S 0.303 5.697 12 C -0.299 4.299 13 C -0.134 4.134 14 C -0.097 4.097 15 C -0.188 4.188 16 C 0.106 3.894 17 O -0.311 6.311 18 C -0.193 4.193 19 H 0.089 0.911 20 H 0.165 0.835 21 H 0.193 0.807 22 H 0.179 0.821 23 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges 5.310 -6.957 -1.222 8.837 hybrid contribution 1.560 1.058 -0.416 1.930 sum 6.870 -5.899 -1.638 9.202 Atomic orbital electron populations 1.70165 1.09382 1.29384 1.31305 1.27148 0.95658 1.05214 0.92691 0.85019 0.78298 0.74470 0.80465 1.17279 1.19896 1.18226 1.19736 0.95599 0.88739 1.43574 0.87123 1.19613 0.87120 0.93138 0.94141 1.72978 1.15160 1.12384 1.43727 1.80618 1.12777 0.96856 1.79458 1.24585 1.01144 0.98599 1.05539 1.20588 0.97714 0.91992 1.03086 1.21446 0.90843 1.00661 0.96736 1.21472 1.01937 0.90064 1.05279 1.18289 0.84241 0.88754 0.98150 1.84678 1.56079 1.55574 1.34769 1.21130 0.95647 0.93545 1.08996 0.91053 0.83478 0.80698 0.82104 0.73789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -44.88 11.64 21.83 0.25 -44.62 14 2 C 0.01 0.69 5.50 85.25 0.47 1.16 14 3 Si 1.00 39.27 29.56 68.60 2.03 41.30 14 4 H -0.25 -9.08 7.11 99.48 0.71 -8.37 14 5 H -0.27 -10.45 7.11 99.48 0.71 -9.74 14 6 H -0.26 -9.81 7.11 99.48 0.71 -9.11 14 7 C -0.43 -23.96 9.03 23.27 0.21 -23.75 14 8 H 0.11 5.54 6.01 -2.91 -0.02 5.52 14 9 C 0.22 12.60 6.58 41.98 0.28 12.87 14 10 N -0.61 -37.12 8.91 -66.18 -0.59 -37.71 14 11 S 0.15 7.61 23.35 -56.49 -1.32 6.29 14 12 C -0.18 -8.06 6.70 22.92 0.15 -7.91 14 13 C -0.11 -3.71 10.07 22.33 0.22 -3.49 14 14 C -0.08 -2.04 10.04 22.30 0.22 -1.82 14 15 C -0.17 -4.98 9.93 22.35 0.22 -4.75 14 16 C 0.15 6.09 6.75 22.82 0.15 6.24 14 17 O -0.50 -18.09 11.47 -91.35 -1.05 -19.14 14 18 C -0.18 -8.83 6.11 -20.06 -0.12 -8.96 14 19 H 0.28 14.70 8.30 -92.71 -0.77 13.93 14 20 H 0.15 4.03 8.06 -2.91 -0.02 4.01 14 21 H 0.18 2.95 8.06 -2.91 -0.02 2.93 14 22 H 0.16 3.58 8.06 -2.91 -0.02 3.56 14 23 H 0.40 10.91 9.06 -74.06 -0.67 10.24 14 Total: -1.00 -73.05 224.50 1.73 -71.32 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: 0.59 Total: 12.97 kcal Atomic # 6 Polarization: -32.21 SS G_CDS: 1.81 Total: -30.40 kcal Atomic # 7 Polarization: -82.00 SS G_CDS: -0.34 Total: -82.33 kcal Atomic # 8 Polarization: -18.09 SS G_CDS: -1.05 Total: -19.14 kcal Atomic # 14 Polarization: 39.27 SS G_CDS: 2.03 Total: 41.30 kcal Atomic # 16 Polarization: 7.61 SS G_CDS: -1.32 Total: 6.29 kcal Total: -73.05 1.73 -71.32 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260459422.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.712 kcal (2) G-P(sol) polarization free energy of solvation -73.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds