Wall clock time and date at job start Mon Mar 30 2020 02:43:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46903 * 110.99701 * 2 1 4 4 C 1.46900 * 111.00241 * 123.95160 * 2 1 3 5 5 C 1.53003 * 109.47140 * 179.00893 * 4 2 1 6 6 C 1.50697 * 109.46789 * 59.01044 * 4 2 1 7 7 H 1.08004 * 120.00149 * 240.00219 * 6 4 2 8 8 C 1.37877 * 120.00096 * 59.99964 * 6 4 2 9 9 N 1.31515 * 119.99925 * 0.02562 * 8 6 4 10 10 Si 1.86810 * 120.00016 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.46625 * 60.00167 * 10 8 6 12 12 H 1.48500 * 109.46934 * 180.02562 * 10 8 6 13 13 H 1.48496 * 109.47058 * 300.00172 * 10 8 6 14 14 C 1.50703 * 109.46965 * 299.01190 * 4 2 1 15 15 C 1.38645 * 120.79432 * 358.53650 * 14 4 2 16 16 C 1.38199 * 119.16529 * 179.79663 * 15 14 4 17 17 N 1.31869 * 120.76156 * 0.49112 * 16 15 14 18 18 C 1.31872 * 121.72929 * 359.74469 * 17 16 15 19 19 C 1.38206 * 120.76206 * 0.02562 * 18 17 16 20 20 H 1.09002 * 109.47383 * 45.66819 * 1 2 3 21 21 H 1.09001 * 109.47062 * 285.66850 * 1 2 3 22 22 H 1.09002 * 109.47251 * 165.66937 * 1 2 3 23 23 H 1.09003 * 109.47151 * 80.72741 * 3 2 1 24 24 H 1.09003 * 109.46768 * 200.72567 * 3 2 1 25 25 H 1.09001 * 109.47416 * 320.72530 * 3 2 1 26 26 H 1.08999 * 109.47264 * 60.00295 * 5 4 2 27 27 H 1.08998 * 109.46708 * 179.97438 * 5 4 2 28 28 H 1.08992 * 109.47050 * 300.00186 * 5 4 2 29 29 H 0.97006 * 119.99914 * 180.02562 * 9 8 6 30 30 H 1.08000 * 120.41569 * 0.02562 * 15 14 4 31 31 H 1.08003 * 119.61994 * 180.20536 * 16 15 14 32 32 H 1.07995 * 119.61943 * 179.97438 * 18 17 16 33 33 H 1.07995 * 120.41922 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7659 1.1376 5 6 3.5248 -0.7638 1.0898 6 6 1.4925 -2.1846 1.0638 7 1 0.8970 -2.5890 1.8689 8 6 1.7926 -2.9663 -0.0316 9 7 2.5182 -2.4740 -1.0118 10 14 1.1698 -4.7251 -0.1228 11 1 -0.3145 -4.7275 -0.0761 12 1 1.6266 -5.3469 -1.3916 13 1 1.7025 -5.4991 1.0271 14 6 1.5322 -0.1350 2.4254 15 6 0.7568 1.0143 2.4141 16 6 0.3470 1.5621 3.6148 17 7 0.6931 1.0098 4.7612 18 6 1.4334 -0.0804 4.8102 19 6 1.8764 -0.6868 3.6500 20 1 -0.3634 0.7181 -0.7351 21 1 -0.3633 0.2775 0.9895 22 1 -0.3634 -0.9957 -0.2544 23 1 1.9710 1.7700 1.0143 24 1 3.0229 1.3662 -0.3637 25 1 1.3829 1.9958 -0.6505 26 1 3.8886 0.2623 1.1432 27 1 3.9153 -1.3318 1.9342 28 1 3.8598 -1.2201 0.1584 29 1 2.7291 -3.0239 -1.7826 30 1 0.4736 1.4736 1.4785 31 1 -0.2600 2.4554 3.6145 32 1 1.6973 -0.5037 5.7680 33 1 2.4827 -1.5793 3.6966 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260465693.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:27 Heat of formation + Delta-G solvation = 76.941336 kcal Electronic energy + Delta-G solvation = -15711.062608 eV Core-core repulsion = 13352.482926 eV Total energy + Delta-G solvation = -2358.579682 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.05745 -37.15485 -32.84306 -31.66756 -30.43981 -28.99263 -27.04130 -24.66919 -23.52918 -22.78162 -22.12381 -19.22532 -16.67104 -15.95022 -15.57742 -15.04767 -14.52902 -13.82488 -13.58282 -13.42641 -13.41312 -12.82892 -11.83504 -11.76308 -11.51290 -11.15911 -11.06114 -10.97345 -10.83202 -10.51587 -10.38728 -10.12397 -9.88624 -9.28579 -8.90126 -8.52221 -8.44939 -8.34066 -6.83186 -5.95192 -4.12464 1.74472 2.02578 3.28764 3.34287 3.37271 4.35972 4.49760 4.96799 5.04935 5.41676 5.56267 5.62208 5.75664 5.87796 6.08142 6.19654 6.25909 6.32791 6.36637 6.54498 6.62851 6.75222 6.83159 6.91576 7.02517 7.06156 7.21899 7.36510 7.72646 7.85697 8.16447 8.47454 8.53079 8.59372 8.95492 9.54839 11.04333 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.030584 B = 0.011768 C = 0.010159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.281428 B = 2378.737896 C = 2755.432900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.496 5.496 3 C 0.002 3.998 4 C 0.271 3.729 5 C -0.123 4.123 6 C -0.523 4.523 7 H 0.055 0.945 8 C 0.088 3.912 9 N -0.842 5.842 10 Si 0.884 3.116 11 H -0.278 1.278 12 H -0.287 1.287 13 H -0.277 1.277 14 C -0.022 4.022 15 C -0.197 4.197 16 C 0.079 3.921 17 N -0.508 5.508 18 C 0.081 3.919 19 C -0.159 4.159 20 H 0.037 0.963 21 H 0.026 0.974 22 H 0.069 0.931 23 H 0.027 0.973 24 H 0.056 0.944 25 H 0.045 0.955 26 H 0.011 0.989 27 H 0.034 0.966 28 H 0.097 0.903 29 H 0.258 0.742 30 H 0.146 0.854 31 H 0.142 0.858 32 H 0.144 0.856 33 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.101 4.682 3.810 6.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.218 5.218 3 C -0.146 4.146 4 C 0.183 3.817 5 C -0.181 4.181 6 C -0.561 4.561 7 H 0.073 0.927 8 C -0.119 4.119 9 N -0.476 5.476 10 Si 0.712 3.288 11 H -0.203 1.203 12 H -0.213 1.213 13 H -0.203 1.203 14 C -0.032 4.032 15 C -0.216 4.216 16 C -0.077 4.077 17 N -0.218 5.218 18 C -0.076 4.076 19 C -0.179 4.179 20 H 0.056 0.944 21 H 0.044 0.956 22 H 0.088 0.912 23 H 0.045 0.955 24 H 0.075 0.925 25 H 0.064 0.936 26 H 0.030 0.970 27 H 0.053 0.947 28 H 0.116 0.884 29 H 0.068 0.932 30 H 0.163 0.837 31 H 0.159 0.841 32 H 0.161 0.839 33 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -1.123 4.802 3.932 6.308 hybrid contribution -0.428 -0.957 -0.194 1.066 sum -1.551 3.845 3.738 5.582 Atomic orbital electron populations 1.22542 0.89772 1.01793 0.98247 1.62493 1.05763 1.09162 1.44391 1.22817 1.00706 0.92089 0.98978 1.17875 0.92585 0.92088 0.79147 1.21811 0.95383 0.97382 1.03522 1.20672 1.35739 0.94222 1.05501 0.92662 1.24869 0.94368 0.97345 0.95339 1.69995 1.35064 1.35294 1.07243 0.86811 0.79393 0.85321 0.77310 1.20341 1.21250 1.20284 1.21897 0.90848 0.91562 0.98872 1.22653 1.00909 0.98143 0.99920 1.22525 0.98135 0.98933 0.88142 1.67530 1.13237 1.11135 1.29855 1.22598 0.94714 0.92179 0.98084 1.22021 1.01879 1.01393 0.92646 0.94402 0.95573 0.91231 0.95464 0.92513 0.93635 0.96964 0.94734 0.88434 0.93180 0.83680 0.84057 0.83853 0.84903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.51 8.38 60.06 0.50 1.01 16 2 N -0.50 -11.12 4.15 -238.11 -0.99 -12.11 16 3 C 0.00 0.05 7.79 60.07 0.47 0.51 16 4 C 0.27 6.25 0.17 -133.90 -0.02 6.23 16 5 C -0.12 -2.81 7.80 37.16 0.29 -2.52 16 6 C -0.52 -13.30 6.52 -34.44 -0.22 -13.52 16 7 H 0.06 1.44 7.59 -52.48 -0.40 1.04 16 8 C 0.09 2.27 5.23 -17.82 -0.09 2.17 16 9 N -0.84 -22.40 10.80 55.43 0.60 -21.80 16 10 Si 0.88 20.28 29.54 -169.99 -5.02 15.26 16 11 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 12 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 13 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 14 C -0.02 -0.46 4.15 -104.32 -0.43 -0.89 16 15 C -0.20 -3.72 5.70 -39.45 -0.23 -3.95 16 16 C 0.08 1.39 11.18 -17.55 -0.20 1.19 16 17 N -0.51 -9.39 10.36 -13.25 -0.14 -9.53 16 18 C 0.08 1.43 11.18 -17.55 -0.20 1.23 16 19 C -0.16 -3.10 8.83 -39.44 -0.35 -3.45 16 20 H 0.04 0.69 7.71 -51.93 -0.40 0.29 16 21 H 0.03 0.53 4.38 -51.93 -0.23 0.30 16 22 H 0.07 1.61 7.46 -51.93 -0.39 1.22 16 23 H 0.03 0.51 4.64 -51.93 -0.24 0.27 16 24 H 0.06 1.11 7.28 -51.93 -0.38 0.74 16 25 H 0.04 0.78 7.65 -51.93 -0.40 0.38 16 26 H 0.01 0.25 6.75 -51.93 -0.35 -0.10 16 27 H 0.03 0.75 7.55 -51.93 -0.39 0.36 16 28 H 0.10 2.47 6.07 -51.93 -0.32 2.15 16 29 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 30 H 0.15 2.63 3.66 -52.49 -0.19 2.44 16 31 H 0.14 2.03 8.06 -52.48 -0.42 1.61 16 32 H 0.14 2.08 8.06 -52.49 -0.42 1.66 16 33 H 0.13 2.52 7.74 -52.49 -0.41 2.12 16 LS Contribution 256.02 15.07 3.86 3.86 Total: -1.00 -27.40 256.02 -6.23 -33.63 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -4.07 Total: 2.67 kcal Atomic # 6 Polarization: -11.50 SS G_CDS: -0.48 Total: -11.98 kcal Atomic # 7 Polarization: -42.91 SS G_CDS: -0.53 Total: -43.44 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -27.40 -6.23 -33.63 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260465693.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.574 kcal (2) G-P(sol) polarization free energy of solvation -27.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds