Wall clock time and date at job start Mon Mar 30 2020 02:43:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46903 * 110.99701 * 2 1 4 4 C 1.46900 * 111.00241 * 123.95160 * 2 1 3 5 5 C 1.53003 * 109.47140 * 179.00893 * 4 2 1 6 6 C 1.50697 * 109.46789 * 59.01044 * 4 2 1 7 7 H 1.08004 * 120.00149 * 240.00219 * 6 4 2 8 8 C 1.37877 * 120.00096 * 59.99964 * 6 4 2 9 9 N 1.31515 * 119.99925 * 0.02562 * 8 6 4 10 10 Si 1.86810 * 120.00016 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.46625 * 60.00167 * 10 8 6 12 12 H 1.48500 * 109.46934 * 180.02562 * 10 8 6 13 13 H 1.48496 * 109.47058 * 300.00172 * 10 8 6 14 14 C 1.50703 * 109.46965 * 299.01190 * 4 2 1 15 15 C 1.38645 * 120.79432 * 358.53650 * 14 4 2 16 16 C 1.38199 * 119.16529 * 179.79663 * 15 14 4 17 17 N 1.31869 * 120.76156 * 0.49112 * 16 15 14 18 18 C 1.31872 * 121.72929 * 359.74469 * 17 16 15 19 19 C 1.38206 * 120.76206 * 0.02562 * 18 17 16 20 20 H 1.09002 * 109.47383 * 45.66819 * 1 2 3 21 21 H 1.09001 * 109.47062 * 285.66850 * 1 2 3 22 22 H 1.09002 * 109.47251 * 165.66937 * 1 2 3 23 23 H 1.09003 * 109.47151 * 80.72741 * 3 2 1 24 24 H 1.09003 * 109.46768 * 200.72567 * 3 2 1 25 25 H 1.09001 * 109.47416 * 320.72530 * 3 2 1 26 26 H 1.08999 * 109.47264 * 60.00295 * 5 4 2 27 27 H 1.08998 * 109.46708 * 179.97438 * 5 4 2 28 28 H 1.08992 * 109.47050 * 300.00186 * 5 4 2 29 29 H 0.97006 * 119.99914 * 180.02562 * 9 8 6 30 30 H 1.08000 * 120.41569 * 0.02562 * 15 14 4 31 31 H 1.08003 * 119.61994 * 180.20536 * 16 15 14 32 32 H 1.07995 * 119.61943 * 179.97438 * 18 17 16 33 33 H 1.07995 * 120.41922 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7659 1.1376 5 6 3.5248 -0.7638 1.0898 6 6 1.4925 -2.1846 1.0638 7 1 0.8970 -2.5890 1.8689 8 6 1.7926 -2.9663 -0.0316 9 7 2.5182 -2.4740 -1.0118 10 14 1.1698 -4.7251 -0.1228 11 1 -0.3145 -4.7275 -0.0761 12 1 1.6266 -5.3469 -1.3916 13 1 1.7025 -5.4991 1.0271 14 6 1.5322 -0.1350 2.4254 15 6 0.7568 1.0143 2.4141 16 6 0.3470 1.5621 3.6148 17 7 0.6931 1.0098 4.7612 18 6 1.4334 -0.0804 4.8102 19 6 1.8764 -0.6868 3.6500 20 1 -0.3634 0.7181 -0.7351 21 1 -0.3633 0.2775 0.9895 22 1 -0.3634 -0.9957 -0.2544 23 1 1.9710 1.7700 1.0143 24 1 3.0229 1.3662 -0.3637 25 1 1.3829 1.9958 -0.6505 26 1 3.8886 0.2623 1.1432 27 1 3.9153 -1.3318 1.9342 28 1 3.8598 -1.2201 0.1584 29 1 2.7291 -3.0239 -1.7826 30 1 0.4736 1.4736 1.4785 31 1 -0.2600 2.4554 3.6145 32 1 1.6973 -0.5037 5.7680 33 1 2.4827 -1.5793 3.6966 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260465693.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:27 Heat of formation + Delta-G solvation = 59.907773 kcal Electronic energy + Delta-G solvation = -15711.801239 eV Core-core repulsion = 13352.482926 eV Total energy + Delta-G solvation = -2359.318313 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.56721 -38.74386 -34.68681 -33.28827 -31.90547 -30.67981 -28.72527 -26.51818 -25.22200 -24.23154 -23.64801 -20.91214 -18.40089 -17.59255 -17.11687 -16.62534 -16.28221 -15.45267 -15.27657 -14.91782 -14.87297 -14.50273 -13.53697 -13.27041 -13.19006 -12.89548 -12.81317 -12.67563 -12.57350 -12.24960 -12.13082 -11.85906 -11.65551 -11.07328 -10.43512 -10.35808 -10.03101 -9.84453 -8.48604 -7.90092 -6.12055 0.32734 0.52503 1.44114 1.46852 1.51853 2.47890 3.03010 3.21710 3.67326 3.74153 4.07426 4.11865 4.31984 4.41948 4.58307 4.64302 4.75337 4.80464 4.94022 4.95775 4.98499 5.11577 5.17643 5.21731 5.34100 5.40789 5.58934 5.73053 5.90250 6.02095 6.31889 6.67092 6.88010 7.10977 7.12194 7.57168 9.06798 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.030584 B = 0.011768 C = 0.010159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.281428 B = 2378.737896 C = 2755.432900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.521 5.521 3 C 0.007 3.993 4 C 0.268 3.732 5 C -0.114 4.114 6 C -0.529 4.529 7 H 0.041 0.959 8 C 0.051 3.949 9 N -0.864 5.864 10 Si 0.933 3.067 11 H -0.280 1.280 12 H -0.286 1.286 13 H -0.275 1.275 14 C -0.044 4.044 15 C -0.201 4.201 16 C 0.084 3.916 17 N -0.516 5.516 18 C 0.087 3.913 19 C -0.174 4.174 20 H 0.061 0.939 21 H 0.035 0.965 22 H 0.038 0.962 23 H 0.037 0.963 24 H 0.047 0.953 25 H 0.068 0.932 26 H 0.023 0.977 27 H 0.033 0.967 28 H 0.070 0.930 29 H 0.255 0.745 30 H 0.154 0.846 31 H 0.177 0.823 32 H 0.176 0.824 33 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.845 5.756 4.759 7.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.244 5.244 3 C -0.140 4.140 4 C 0.180 3.820 5 C -0.172 4.172 6 C -0.568 4.568 7 H 0.059 0.941 8 C -0.154 4.154 9 N -0.499 5.499 10 Si 0.760 3.240 11 H -0.206 1.206 12 H -0.212 1.212 13 H -0.200 1.200 14 C -0.054 4.054 15 C -0.221 4.221 16 C -0.072 4.072 17 N -0.226 5.226 18 C -0.069 4.069 19 C -0.194 4.194 20 H 0.080 0.920 21 H 0.053 0.947 22 H 0.057 0.943 23 H 0.055 0.945 24 H 0.065 0.935 25 H 0.086 0.914 26 H 0.042 0.958 27 H 0.052 0.948 28 H 0.089 0.911 29 H 0.064 0.936 30 H 0.171 0.829 31 H 0.194 0.806 32 H 0.193 0.807 33 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -1.868 5.876 4.888 7.868 hybrid contribution -0.207 -1.249 -0.439 1.340 sum -2.075 4.627 4.449 6.746 Atomic orbital electron populations 1.22461 0.89107 1.00658 0.99431 1.62302 1.06577 1.10957 1.44522 1.22784 1.00455 0.90783 1.00026 1.17707 0.92216 0.91335 0.80742 1.21668 0.95947 0.97688 1.01936 1.20851 1.35103 0.95966 1.04840 0.94068 1.25384 0.94697 0.99997 0.95302 1.70109 1.36125 1.36093 1.07531 0.86039 0.78589 0.82215 0.77156 1.20611 1.21187 1.20033 1.21784 0.92427 0.92887 0.98290 1.22720 1.00743 0.97639 1.00959 1.23060 0.97368 0.99471 0.87268 1.67656 1.13406 1.11334 1.30214 1.23034 0.93529 0.91605 0.98760 1.22095 1.02552 1.01697 0.93059 0.92001 0.94691 0.94344 0.94519 0.93467 0.91360 0.95816 0.94820 0.91116 0.93564 0.82906 0.80577 0.80727 0.85337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.27 8.38 127.69 1.07 2.34 16 2 N -0.52 -23.00 4.15 -907.25 -3.76 -26.76 16 3 C 0.01 0.27 7.79 127.69 0.99 1.27 16 4 C 0.27 12.32 0.17 2.04 0.00 12.32 16 5 C -0.11 -5.26 7.80 71.98 0.56 -4.70 16 6 C -0.53 -27.17 6.52 25.60 0.17 -27.00 16 7 H 0.04 2.18 7.59 -2.91 -0.02 2.15 16 8 C 0.05 2.65 5.23 84.65 0.44 3.09 16 9 N -0.86 -46.62 10.80 21.45 0.23 -46.39 16 10 Si 0.93 42.05 29.54 68.60 2.03 44.08 16 11 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 12 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 13 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 14 C -0.04 -1.79 4.15 -19.67 -0.08 -1.87 16 15 C -0.20 -7.14 5.70 22.36 0.13 -7.02 16 16 C 0.08 2.69 11.18 84.68 0.95 3.64 16 17 N -0.52 -17.50 10.36 -195.85 -2.03 -19.53 16 18 C 0.09 2.87 11.18 84.68 0.95 3.81 16 19 C -0.17 -6.57 8.83 22.36 0.20 -6.37 16 20 H 0.06 2.16 7.71 -2.39 -0.02 2.14 16 21 H 0.04 1.36 4.38 -2.39 -0.01 1.35 16 22 H 0.04 1.77 7.46 -2.39 -0.02 1.75 16 23 H 0.04 1.29 4.64 -2.39 -0.01 1.28 16 24 H 0.05 1.80 7.28 -2.39 -0.02 1.79 16 25 H 0.07 2.16 7.65 -2.39 -0.02 2.15 16 26 H 0.02 0.98 6.75 -2.39 -0.02 0.97 16 27 H 0.03 1.48 7.55 -2.39 -0.02 1.46 16 28 H 0.07 3.64 6.07 -2.39 -0.01 3.63 16 29 H 0.25 13.39 8.31 -92.70 -0.77 12.62 16 30 H 0.15 5.12 3.66 -2.91 -0.01 5.11 16 31 H 0.18 4.28 8.06 -2.91 -0.02 4.26 16 32 H 0.18 4.52 8.06 -2.91 -0.02 4.50 16 33 H 0.13 4.86 7.74 -2.91 -0.02 4.84 16 Total: -1.00 -57.52 256.02 2.95 -54.58 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: 1.11 Total: 14.50 kcal Atomic # 6 Polarization: -25.86 SS G_CDS: 5.37 Total: -20.49 kcal Atomic # 7 Polarization: -87.12 SS G_CDS: -5.56 Total: -92.68 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.08 kcal Total: -57.52 2.95 -54.58 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260465693.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.485 kcal (2) G-P(sol) polarization free energy of solvation -57.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds