Wall clock time and date at job start Mon Mar 30 2020 02:43:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.46902 * 110.99719 * 2 1 4 4 C 1.46899 * 110.99676 * 123.95333 * 2 1 3 5 5 C 1.52994 * 109.47414 * 60.93292 * 4 2 1 6 6 C 1.50704 * 109.46609 * 180.92956 * 4 2 1 7 7 H 1.08001 * 119.99782 * 119.99730 * 6 4 2 8 8 C 1.37873 * 119.99922 * 299.99775 * 6 4 2 9 9 N 1.31513 * 120.00392 * 0.02562 * 8 6 4 10 10 Si 1.86806 * 119.99759 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.47341 * 60.00252 * 10 8 6 12 12 H 1.48501 * 109.46952 * 180.02562 * 10 8 6 13 13 H 1.48496 * 109.47090 * 299.99964 * 10 8 6 14 14 C 1.50694 * 109.47161 * 300.92852 * 4 2 1 15 15 C 1.38656 * 120.79382 * 355.72586 * 14 4 2 16 16 C 1.38203 * 119.16315 * 179.80073 * 15 14 4 17 17 N 1.31869 * 120.76623 * 0.48675 * 16 15 14 18 18 C 1.31873 * 121.72418 * 359.74189 * 17 16 15 19 19 C 1.38207 * 120.76417 * 0.02562 * 18 17 16 20 20 H 1.08998 * 109.47070 * 47.85862 * 1 2 3 21 21 H 1.09009 * 109.46808 * 167.85803 * 1 2 3 22 22 H 1.08998 * 109.47401 * 287.85545 * 1 2 3 23 23 H 1.08998 * 109.47199 * 81.97784 * 3 2 1 24 24 H 1.09001 * 109.46703 * 201.97851 * 3 2 1 25 25 H 1.08999 * 109.47232 * 321.97690 * 3 2 1 26 26 H 1.08992 * 109.47434 * 59.99310 * 5 4 2 27 27 H 1.08995 * 109.47241 * 180.02562 * 5 4 2 28 28 H 1.09006 * 109.47068 * 299.99546 * 5 4 2 29 29 H 0.96996 * 120.00092 * 180.02562 * 9 8 6 30 30 H 1.08007 * 120.41414 * 0.02562 * 15 14 4 31 31 H 1.08002 * 119.61428 * 180.20677 * 16 15 14 32 32 H 1.08002 * 119.61602 * 179.97438 * 18 17 16 33 33 H 1.07997 * 120.41271 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 1.5240 -2.2180 1.0367 6 6 3.5018 -0.7244 1.1171 7 1 4.0417 -0.3035 1.9524 8 6 4.1905 -1.2237 0.0321 9 7 3.5330 -1.7358 -0.9852 10 14 6.0577 -1.1728 0.0071 11 1 6.5895 -1.9475 1.1570 12 1 6.5521 -1.7663 -1.2612 13 1 6.5158 0.2363 0.1054 14 6 1.4937 -0.1631 2.4243 15 6 0.7372 0.9989 2.4163 16 6 0.2909 1.5203 3.6158 17 7 0.5848 0.9312 4.7584 18 6 1.3056 -0.1722 4.8044 19 6 1.7825 -0.7539 3.6450 20 1 -0.3633 0.6895 -0.7620 21 1 -0.3633 -1.0048 -0.2162 22 1 -0.3634 0.3151 0.9781 23 1 1.9918 1.7621 1.0176 24 1 3.0153 1.3691 -0.3846 25 1 1.3699 2.0008 -0.6330 26 1 1.8868 -2.6540 0.1061 27 1 1.9141 -2.7862 1.8811 28 1 0.4344 -2.2480 1.0515 29 1 4.0176 -2.0874 -1.7484 30 1 0.4967 1.4883 1.4840 31 1 -0.3017 2.4232 3.6178 32 1 1.5265 -0.6260 5.7592 33 1 2.3726 -1.6573 3.6893 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260465697.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:30 Heat of formation + Delta-G solvation = 77.110939 kcal Electronic energy + Delta-G solvation = -15714.120251 eV Core-core repulsion = 13355.547923 eV Total energy + Delta-G solvation = -2358.572328 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.05411 -37.15030 -32.83365 -31.69273 -30.44319 -28.98149 -27.03574 -24.67264 -23.53603 -22.77216 -22.12131 -19.22369 -16.65769 -15.94946 -15.60781 -15.07121 -14.53865 -13.81890 -13.58228 -13.44497 -13.38355 -12.80357 -11.85674 -11.77354 -11.49113 -11.16452 -11.07268 -10.97873 -10.83022 -10.52296 -10.36608 -10.08859 -9.88488 -9.30207 -8.90614 -8.52128 -8.45133 -8.34168 -6.82586 -5.95858 -4.13400 1.74396 2.02562 3.28371 3.33918 3.37008 4.35374 4.49865 4.96732 5.04598 5.41837 5.55868 5.61956 5.76182 5.87128 6.10329 6.20224 6.24495 6.32658 6.35680 6.57068 6.60397 6.76447 6.83710 6.92536 7.02911 7.07192 7.24200 7.36233 7.72789 7.84742 8.15683 8.47532 8.52973 8.60118 8.95133 9.54044 11.03495 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.030684 B = 0.011715 C = 0.010210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.302081 B = 2389.575946 C = 2741.803523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.003 4.003 2 N -0.497 5.497 3 C 0.033 3.967 4 C 0.271 3.729 5 C -0.122 4.122 6 C -0.523 4.523 7 H 0.055 0.945 8 C 0.088 3.912 9 N -0.842 5.842 10 Si 0.884 3.116 11 H -0.277 1.277 12 H -0.287 1.287 13 H -0.278 1.278 14 C -0.021 4.021 15 C -0.196 4.196 16 C 0.079 3.921 17 N -0.508 5.508 18 C 0.081 3.919 19 C -0.161 4.161 20 H 0.046 0.954 21 H 0.057 0.943 22 H 0.029 0.971 23 H 0.027 0.973 24 H 0.066 0.934 25 H 0.034 0.966 26 H 0.097 0.903 27 H 0.034 0.966 28 H 0.011 0.989 29 H 0.258 0.742 30 H 0.146 0.854 31 H 0.142 0.858 32 H 0.144 0.856 33 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.186 2.456 3.710 6.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 N -0.219 5.219 3 C -0.115 4.115 4 C 0.183 3.817 5 C -0.180 4.180 6 C -0.562 4.562 7 H 0.073 0.927 8 C -0.119 4.119 9 N -0.476 5.476 10 Si 0.712 3.288 11 H -0.203 1.203 12 H -0.212 1.212 13 H -0.203 1.203 14 C -0.031 4.031 15 C -0.215 4.215 16 C -0.077 4.077 17 N -0.218 5.218 18 C -0.075 4.075 19 C -0.181 4.181 20 H 0.065 0.935 21 H 0.076 0.924 22 H 0.047 0.953 23 H 0.045 0.955 24 H 0.085 0.915 25 H 0.053 0.947 26 H 0.115 0.885 27 H 0.053 0.947 28 H 0.030 0.970 29 H 0.068 0.932 30 H 0.164 0.836 31 H 0.160 0.840 32 H 0.161 0.839 33 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -4.322 2.495 3.828 6.290 hybrid contribution 1.089 0.128 -0.143 1.106 sum -3.233 2.623 3.685 5.560 Atomic orbital electron populations 1.22930 0.91859 1.01254 0.99120 1.62486 1.03146 1.11905 1.44376 1.22389 1.00928 0.89627 0.98582 1.17872 0.94468 0.90214 0.79181 1.21803 0.95948 0.96759 1.03536 1.20658 0.88208 1.42966 1.04347 0.92700 1.24869 0.97490 0.94330 0.95257 1.69998 1.34509 1.36894 1.06162 0.86810 0.86333 0.78401 0.77297 1.20271 1.21236 1.20329 1.21896 0.89879 0.92428 0.98904 1.22649 1.00716 0.98236 0.99932 1.22530 0.98183 0.98835 0.88175 1.67533 1.14311 1.10077 1.29840 1.22594 0.94654 0.92259 0.98036 1.22013 1.01346 1.02006 0.92732 0.93486 0.92426 0.95322 0.95486 0.91532 0.94686 0.88462 0.94736 0.96971 0.93156 0.83648 0.84047 0.83855 0.84974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.06 8.30 60.07 0.50 0.43 16 2 N -0.50 -11.15 4.15 -238.11 -0.99 -12.13 16 3 C 0.03 0.69 8.03 60.07 0.48 1.17 16 4 C 0.27 6.24 0.17 -133.91 -0.02 6.22 16 5 C -0.12 -2.80 7.82 37.15 0.29 -2.51 16 6 C -0.52 -13.32 6.57 -34.44 -0.23 -13.55 16 7 H 0.05 1.44 7.71 -52.49 -0.40 1.03 16 8 C 0.09 2.26 5.19 -17.82 -0.09 2.17 16 9 N -0.84 -22.36 10.80 55.43 0.60 -21.76 16 10 Si 0.88 20.27 29.54 -169.99 -5.02 15.25 16 11 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 12 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 13 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 14 C -0.02 -0.44 4.14 -104.32 -0.43 -0.87 16 15 C -0.20 -3.72 5.72 -39.44 -0.23 -3.94 16 16 C 0.08 1.39 11.18 -17.55 -0.20 1.20 16 17 N -0.51 -9.39 10.36 -13.25 -0.14 -9.53 16 18 C 0.08 1.43 11.18 -17.55 -0.20 1.24 16 19 C -0.16 -3.12 9.01 -39.44 -0.36 -3.48 16 20 H 0.05 0.81 7.76 -51.93 -0.40 0.41 16 21 H 0.06 1.13 6.78 -51.92 -0.35 0.78 16 22 H 0.03 0.53 4.29 -51.93 -0.22 0.31 16 23 H 0.03 0.56 4.75 -51.93 -0.25 0.31 16 24 H 0.07 1.54 7.67 -51.93 -0.40 1.14 16 25 H 0.03 0.64 7.66 -51.93 -0.40 0.24 16 26 H 0.10 2.46 6.07 -51.93 -0.32 2.15 16 27 H 0.03 0.75 7.26 -51.93 -0.38 0.37 16 28 H 0.01 0.24 6.61 -51.93 -0.34 -0.10 16 29 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 30 H 0.15 2.65 3.66 -52.48 -0.19 2.45 16 31 H 0.14 2.04 8.06 -52.49 -0.42 1.61 16 32 H 0.14 2.07 8.06 -52.49 -0.42 1.65 16 33 H 0.13 2.49 7.44 -52.49 -0.39 2.10 16 LS Contribution 255.57 15.07 3.85 3.85 Total: -1.00 -27.39 255.57 -6.19 -33.58 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -4.02 Total: 2.67 kcal Atomic # 6 Polarization: -11.45 SS G_CDS: -0.48 Total: -11.93 kcal Atomic # 7 Polarization: -42.90 SS G_CDS: -0.53 Total: -43.43 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -27.39 -6.19 -33.58 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260465697.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.692 kcal (2) G-P(sol) polarization free energy of solvation -27.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds