Wall clock time and date at job start Mon Mar 30 2020 02:43:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.46902 * 110.99719 * 2 1 4 4 C 1.46899 * 110.99676 * 123.95333 * 2 1 3 5 5 C 1.52994 * 109.47414 * 60.93292 * 4 2 1 6 6 C 1.50704 * 109.46609 * 180.92956 * 4 2 1 7 7 H 1.08001 * 119.99782 * 119.99730 * 6 4 2 8 8 C 1.37873 * 119.99922 * 299.99775 * 6 4 2 9 9 N 1.31513 * 120.00392 * 0.02562 * 8 6 4 10 10 Si 1.86806 * 119.99759 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.47341 * 60.00252 * 10 8 6 12 12 H 1.48501 * 109.46952 * 180.02562 * 10 8 6 13 13 H 1.48496 * 109.47090 * 299.99964 * 10 8 6 14 14 C 1.50694 * 109.47161 * 300.92852 * 4 2 1 15 15 C 1.38656 * 120.79382 * 355.72586 * 14 4 2 16 16 C 1.38203 * 119.16315 * 179.80073 * 15 14 4 17 17 N 1.31869 * 120.76623 * 0.48675 * 16 15 14 18 18 C 1.31873 * 121.72418 * 359.74189 * 17 16 15 19 19 C 1.38207 * 120.76417 * 0.02562 * 18 17 16 20 20 H 1.08998 * 109.47070 * 47.85862 * 1 2 3 21 21 H 1.09009 * 109.46808 * 167.85803 * 1 2 3 22 22 H 1.08998 * 109.47401 * 287.85545 * 1 2 3 23 23 H 1.08998 * 109.47199 * 81.97784 * 3 2 1 24 24 H 1.09001 * 109.46703 * 201.97851 * 3 2 1 25 25 H 1.08999 * 109.47232 * 321.97690 * 3 2 1 26 26 H 1.08992 * 109.47434 * 59.99310 * 5 4 2 27 27 H 1.08995 * 109.47241 * 180.02562 * 5 4 2 28 28 H 1.09006 * 109.47068 * 299.99546 * 5 4 2 29 29 H 0.96996 * 120.00092 * 180.02562 * 9 8 6 30 30 H 1.08007 * 120.41414 * 0.02562 * 15 14 4 31 31 H 1.08002 * 119.61428 * 180.20677 * 16 15 14 32 32 H 1.08002 * 119.61602 * 179.97438 * 18 17 16 33 33 H 1.07997 * 120.41271 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 1.5240 -2.2180 1.0367 6 6 3.5018 -0.7244 1.1171 7 1 4.0417 -0.3035 1.9524 8 6 4.1905 -1.2237 0.0321 9 7 3.5330 -1.7358 -0.9852 10 14 6.0577 -1.1728 0.0071 11 1 6.5895 -1.9475 1.1570 12 1 6.5521 -1.7663 -1.2612 13 1 6.5158 0.2363 0.1054 14 6 1.4937 -0.1631 2.4243 15 6 0.7372 0.9989 2.4163 16 6 0.2909 1.5203 3.6158 17 7 0.5848 0.9312 4.7584 18 6 1.3056 -0.1722 4.8044 19 6 1.7825 -0.7539 3.6450 20 1 -0.3633 0.6895 -0.7620 21 1 -0.3633 -1.0048 -0.2162 22 1 -0.3634 0.3151 0.9781 23 1 1.9918 1.7621 1.0176 24 1 3.0153 1.3691 -0.3846 25 1 1.3699 2.0008 -0.6330 26 1 1.8868 -2.6540 0.1061 27 1 1.9141 -2.7862 1.8811 28 1 0.4344 -2.2480 1.0515 29 1 4.0176 -2.0874 -1.7484 30 1 0.4967 1.4883 1.4840 31 1 -0.3017 2.4232 3.6178 32 1 1.5265 -0.6260 5.7592 33 1 2.3726 -1.6573 3.6893 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260465697.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:30 Heat of formation + Delta-G solvation = 60.078917 kcal Electronic energy + Delta-G solvation = -15714.858815 eV Core-core repulsion = 13355.547923 eV Total energy + Delta-G solvation = -2359.310892 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.56346 -38.74089 -34.67800 -33.31462 -31.90936 -30.66512 -28.72394 -26.52224 -25.22817 -24.22325 -23.64647 -20.91044 -18.39423 -17.59594 -17.13930 -16.65206 -16.28362 -15.46177 -15.26905 -14.91652 -14.84664 -14.49215 -13.58037 -13.27097 -13.16946 -12.89914 -12.81107 -12.67654 -12.58375 -12.27115 -12.10977 -11.83412 -11.63675 -11.08909 -10.43359 -10.36352 -10.03018 -9.84632 -8.48296 -7.90848 -6.13119 0.32745 0.52527 1.43724 1.46596 1.51596 2.47446 3.03156 3.20816 3.67301 3.74515 4.07145 4.11570 4.32215 4.41501 4.58726 4.63686 4.77021 4.80016 4.93287 4.95352 4.99355 5.12512 5.17496 5.23476 5.34640 5.41190 5.59849 5.72794 5.89827 6.02081 6.30910 6.66516 6.87870 7.11062 7.12249 7.56346 9.05966 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.030684 B = 0.011715 C = 0.010210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.302081 B = 2389.575946 C = 2741.803523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.001 3.999 2 N -0.521 5.521 3 C 0.040 3.960 4 C 0.268 3.732 5 C -0.114 4.114 6 C -0.530 4.530 7 H 0.040 0.960 8 C 0.052 3.948 9 N -0.863 5.863 10 Si 0.933 3.067 11 H -0.275 1.275 12 H -0.286 1.286 13 H -0.280 1.280 14 C -0.043 4.043 15 C -0.201 4.201 16 C 0.084 3.916 17 N -0.516 5.516 18 C 0.087 3.913 19 C -0.175 4.175 20 H 0.067 0.933 21 H 0.048 0.952 22 H 0.041 0.959 23 H 0.031 0.969 24 H 0.035 0.965 25 H 0.061 0.939 26 H 0.069 0.931 27 H 0.034 0.966 28 H 0.022 0.978 29 H 0.255 0.745 30 H 0.153 0.847 31 H 0.177 0.823 32 H 0.176 0.824 33 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.974 3.453 4.670 7.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 N -0.244 5.244 3 C -0.108 4.108 4 C 0.180 3.820 5 C -0.172 4.172 6 C -0.568 4.568 7 H 0.058 0.942 8 C -0.153 4.153 9 N -0.498 5.498 10 Si 0.760 3.240 11 H -0.201 1.201 12 H -0.211 1.211 13 H -0.206 1.206 14 C -0.053 4.053 15 C -0.220 4.220 16 C -0.072 4.072 17 N -0.226 5.226 18 C -0.069 4.069 19 C -0.195 4.195 20 H 0.085 0.915 21 H 0.067 0.933 22 H 0.058 0.942 23 H 0.049 0.951 24 H 0.054 0.946 25 H 0.080 0.920 26 H 0.088 0.912 27 H 0.053 0.947 28 H 0.041 0.959 29 H 0.065 0.935 30 H 0.170 0.830 31 H 0.194 0.806 32 H 0.193 0.807 33 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -5.110 3.493 4.795 7.830 hybrid contribution 1.296 -0.161 -0.393 1.364 sum -3.814 3.331 4.402 6.710 Atomic orbital electron populations 1.22907 0.89904 1.01394 1.00447 1.62298 1.05070 1.12531 1.44504 1.22295 0.99720 0.89568 0.99188 1.17706 0.93193 0.90360 0.80776 1.21664 0.96493 0.97063 1.01986 1.20824 0.90027 1.42334 1.03639 0.94198 1.25375 1.00425 0.94342 0.95187 1.70110 1.35392 1.37818 1.06463 0.86044 0.82837 0.78010 0.77150 1.20063 1.21138 1.20576 1.21783 0.91424 0.93765 0.98354 1.22713 1.00680 0.97678 1.00950 1.23057 0.97399 0.99414 0.87298 1.67659 1.14492 1.10292 1.30175 1.23038 0.93391 0.91755 0.98719 1.22098 1.01992 1.02331 0.93103 0.91461 0.93299 0.94154 0.95088 0.94619 0.91994 0.91172 0.94725 0.95857 0.93523 0.82954 0.80599 0.80695 0.85283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.05 8.30 127.69 1.06 1.11 16 2 N -0.52 -23.03 4.15 -907.26 -3.76 -26.79 16 3 C 0.04 1.65 8.03 127.69 1.03 2.67 16 4 C 0.27 12.31 0.17 2.03 0.00 12.31 16 5 C -0.11 -5.24 7.82 71.98 0.56 -4.68 16 6 C -0.53 -27.21 6.57 25.60 0.17 -27.04 16 7 H 0.04 2.12 7.71 -2.91 -0.02 2.09 16 8 C 0.05 2.68 5.19 84.65 0.44 3.12 16 9 N -0.86 -46.51 10.80 21.45 0.23 -46.28 16 10 Si 0.93 42.01 29.54 68.60 2.03 44.04 16 11 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 12 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 13 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 14 C -0.04 -1.76 4.14 -19.67 -0.08 -1.84 16 15 C -0.20 -7.16 5.72 22.36 0.13 -7.04 16 16 C 0.08 2.70 11.18 84.68 0.95 3.64 16 17 N -0.52 -17.51 10.36 -195.84 -2.03 -19.53 16 18 C 0.09 2.87 11.18 84.68 0.95 3.82 16 19 C -0.17 -6.59 9.01 22.36 0.20 -6.39 16 20 H 0.07 2.17 7.76 -2.39 -0.02 2.15 16 21 H 0.05 1.86 6.78 -2.38 -0.02 1.84 16 22 H 0.04 1.40 4.29 -2.39 -0.01 1.39 16 23 H 0.03 1.23 4.75 -2.39 -0.01 1.22 16 24 H 0.03 1.65 7.67 -2.39 -0.02 1.63 16 25 H 0.06 2.14 7.66 -2.39 -0.02 2.12 16 26 H 0.07 3.61 6.07 -2.39 -0.01 3.60 16 27 H 0.03 1.52 7.26 -2.39 -0.02 1.50 16 28 H 0.02 0.97 6.61 -2.38 -0.02 0.95 16 29 H 0.26 13.38 8.31 -92.71 -0.77 12.61 16 30 H 0.15 5.15 3.66 -2.91 -0.01 5.14 16 31 H 0.18 4.30 8.06 -2.91 -0.02 4.28 16 32 H 0.18 4.51 8.06 -2.91 -0.02 4.48 16 33 H 0.13 4.83 7.44 -2.91 -0.02 4.81 16 Total: -1.00 -57.48 255.57 2.97 -54.51 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: 1.11 Total: 14.39 kcal Atomic # 6 Polarization: -25.73 SS G_CDS: 5.40 Total: -20.33 kcal Atomic # 7 Polarization: -87.05 SS G_CDS: -5.56 Total: -92.61 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.04 kcal Total: -57.48 2.97 -54.51 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260465697.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.584 kcal (2) G-P(sol) polarization free energy of solvation -57.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds