Wall clock time and date at job start Mon Mar 30 2020 03:06:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09002 * 109.46704 * 2 1 4 4 C 1.50701 * 109.47217 * 239.99950 * 2 1 3 5 5 H 1.07993 * 119.99970 * 245.46740 * 4 2 1 6 6 C 1.37878 * 119.99878 * 65.46271 * 4 2 1 7 7 N 1.31512 * 120.00054 * 9.58213 * 6 4 2 8 8 Si 1.86796 * 120.00038 * 189.58608 * 6 4 2 9 9 H 1.48498 * 109.47386 * 84.99090 * 8 6 4 10 10 H 1.48500 * 109.47586 * 204.99388 * 8 6 4 11 11 H 1.48502 * 109.46863 * 324.99235 * 8 6 4 12 12 C 1.50693 * 109.46992 * 119.99626 * 2 1 3 13 13 C 1.35320 * 126.04003 * 59.97922 * 12 2 1 14 14 N 1.34942 * 107.74834 * 180.02562 * 13 12 2 15 15 C 1.46506 * 126.04008 * 179.97438 * 14 13 12 16 16 N 1.40086 * 107.92411 * 0.02562 * 14 13 12 17 17 C 1.30833 * 108.20467 * 359.97438 * 16 14 13 18 18 C 1.50700 * 125.89541 * 180.26315 * 17 16 14 19 19 C 1.53002 * 117.50114 * 8.44104 * 18 17 16 20 20 C 1.52997 * 117.50229 * 299.77852 * 18 17 16 21 21 H 1.08998 * 109.46702 * 63.40598 * 1 2 3 22 22 H 1.09000 * 109.46690 * 183.40791 * 1 2 3 23 23 H 1.08999 * 109.46696 * 303.40631 * 1 2 3 24 24 H 0.97002 * 119.99964 * 179.97438 * 7 6 4 25 25 H 1.08001 * 126.12564 * 359.97438 * 13 12 2 26 26 H 1.08999 * 109.46699 * 89.99784 * 15 14 13 27 27 H 1.08997 * 109.47227 * 210.00194 * 15 14 13 28 28 H 1.09004 * 109.46658 * 330.00607 * 15 14 13 29 29 H 1.08999 * 115.55009 * 154.10570 * 18 17 16 30 30 H 1.08997 * 117.49599 * 359.97438 * 19 18 17 31 31 H 1.09004 * 117.50060 * 145.02100 * 19 18 17 32 32 H 1.08997 * 117.49989 * 214.97768 * 20 18 17 33 33 H 1.08997 * 117.49641 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.5786 -1.6371 -1.1338 6 6 1.7947 -0.1773 -2.4796 7 7 1.2999 1.0358 -2.5935 8 14 2.1754 -1.1783 -4.0101 9 1 1.0230 -2.0608 -4.3238 10 1 2.4224 -0.2619 -5.1523 11 1 3.3836 -2.0080 -3.7711 12 6 2.0324 -0.7103 1.2305 13 6 1.7816 -1.9973 1.5649 14 7 2.4080 -2.2482 2.7336 15 6 2.4011 -3.5208 3.4594 16 7 3.0650 -1.0764 3.1308 17 6 2.8393 -0.1556 2.2291 18 6 3.3635 1.2570 2.2585 19 6 4.3952 1.6056 3.3333 20 6 2.9632 2.1346 3.4461 21 1 -0.3633 0.4601 -0.9189 22 1 -0.3633 -1.0259 0.0611 23 1 -0.3633 0.5658 0.8579 24 1 1.1330 1.4110 -3.4723 25 1 1.1861 -2.6980 0.9985 26 1 3.2384 -4.1337 3.1258 27 1 2.4938 -3.3298 4.5285 28 1 1.4660 -4.0456 3.2636 29 1 3.4657 1.7408 1.2871 30 1 4.6944 0.8132 4.0193 31 1 5.1758 2.3190 3.0691 32 1 2.8024 3.1957 3.2562 33 1 2.3203 1.6903 4.2060 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260483376.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:07 Heat of formation + Delta-G solvation = 92.406009 kcal Electronic energy + Delta-G solvation = -14847.683179 eV Core-core repulsion = 12489.774095 eV Total energy + Delta-G solvation = -2357.909084 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.52597 -36.59565 -34.40390 -32.25022 -30.86225 -28.08857 -26.28523 -24.96623 -22.51210 -22.01499 -21.59384 -19.09196 -18.38956 -16.20408 -15.97389 -15.01455 -14.75357 -14.45662 -14.11041 -12.97797 -12.77169 -12.46056 -12.30060 -12.13066 -11.51015 -11.26574 -11.16605 -10.86204 -10.84040 -10.60210 -10.29119 -10.25234 -10.01970 -9.81880 -9.15691 -8.93705 -8.35861 -8.25852 -7.29522 -5.94641 -3.95524 2.56713 3.13478 3.34056 3.40662 3.42762 3.57778 4.45541 4.52457 4.94133 5.11861 5.32803 5.38196 5.39759 5.48411 5.57766 5.72016 5.78277 5.98145 6.17382 6.41833 6.50690 6.60441 6.67061 6.88567 6.99293 7.12115 7.27661 7.53811 7.75844 7.80911 8.06746 8.08054 8.47553 8.56272 9.07085 9.66728 11.13615 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.025441 B = 0.009396 C = 0.007832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.299923 B = 2979.395107 C = 3574.063535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.105 3.895 3 H 0.042 0.958 4 C -0.503 4.503 5 H 0.053 0.947 6 C 0.063 3.937 7 N -0.889 5.889 8 Si 0.885 3.115 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.276 1.276 12 C -0.167 4.167 13 C 0.036 3.964 14 N -0.393 5.393 15 C 0.112 3.888 16 N -0.314 5.314 17 C 0.097 3.903 18 C -0.066 4.066 19 C -0.173 4.173 20 C -0.167 4.167 21 H 0.064 0.936 22 H 0.024 0.976 23 H 0.011 0.989 24 H 0.259 0.741 25 H 0.166 0.834 26 H 0.064 0.936 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.128 0.872 30 H 0.096 0.904 31 H 0.093 0.907 32 H 0.096 0.904 33 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.317 -3.398 9.842 10.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.086 3.914 3 H 0.060 0.940 4 C -0.542 4.542 5 H 0.071 0.929 6 C -0.138 4.138 7 N -0.528 5.528 8 Si 0.713 3.287 9 H -0.207 1.207 10 H -0.214 1.214 11 H -0.201 1.201 12 C -0.177 4.177 13 C -0.106 4.106 14 N -0.177 5.177 15 C -0.030 4.030 16 N -0.138 5.138 17 C -0.067 4.067 18 C -0.086 4.086 19 C -0.211 4.211 20 C -0.206 4.206 21 H 0.083 0.917 22 H 0.043 0.957 23 H 0.030 0.970 24 H 0.069 0.931 25 H 0.183 0.817 26 H 0.082 0.918 27 H 0.097 0.903 28 H 0.098 0.902 29 H 0.146 0.854 30 H 0.114 0.886 31 H 0.111 0.889 32 H 0.114 0.886 33 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 1.819 -3.724 10.866 11.629 hybrid contribution -0.268 -0.619 -1.757 1.883 sum 1.551 -4.343 9.108 10.209 Atomic orbital electron populations 1.21711 0.98695 0.98168 0.99511 1.17223 0.91450 0.95541 0.87191 0.93998 1.21155 1.34995 1.07786 0.90249 0.92892 1.24939 0.95517 0.94636 0.98742 1.69961 1.45419 1.13889 1.23511 0.86728 0.78613 0.80263 0.83114 1.20716 1.21397 1.20124 1.20659 1.03479 0.93700 0.99892 1.22183 1.01132 0.98345 0.88988 1.48121 1.41382 1.09612 1.18608 1.21604 1.02423 0.81713 0.97255 1.76985 1.20624 0.92013 1.24133 1.21228 0.98098 0.93929 0.93487 1.20294 1.02710 0.89944 0.95604 1.22933 0.92255 1.03338 1.02529 1.22932 0.98076 0.99091 1.00467 0.91699 0.95680 0.96978 0.93090 0.81723 0.91775 0.90291 0.90225 0.85449 0.88557 0.88876 0.88586 0.89166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.94 8.98 37.16 0.33 -2.61 16 2 C 0.11 2.66 2.49 -92.92 -0.23 2.43 16 3 H 0.04 1.14 6.95 -51.93 -0.36 0.78 16 4 C -0.50 -13.80 8.33 -34.44 -0.29 -14.08 16 5 H 0.05 1.46 7.69 -52.49 -0.40 1.06 16 6 C 0.06 1.74 5.17 -17.82 -0.09 1.64 16 7 N -0.89 -25.41 12.16 55.43 0.67 -24.73 16 8 Si 0.88 21.30 29.55 -169.99 -5.02 16.28 16 9 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 C -0.17 -3.79 4.79 -105.06 -0.50 -4.29 16 13 C 0.04 0.73 10.76 -17.22 -0.19 0.54 16 14 N -0.39 -7.19 4.01 -68.16 -0.27 -7.47 16 15 C 0.11 1.39 11.47 59.85 0.69 2.07 16 16 N -0.31 -6.37 12.15 33.67 0.41 -5.96 16 17 C 0.10 2.07 6.75 -82.41 -0.56 1.51 16 18 C -0.07 -1.22 5.85 -91.77 -0.54 -1.75 16 19 C -0.17 -2.65 10.14 -26.69 -0.27 -2.92 16 20 C -0.17 -2.58 10.24 -26.69 -0.27 -2.85 16 21 H 0.06 1.68 6.84 -51.93 -0.36 1.33 16 22 H 0.02 0.55 7.91 -51.93 -0.41 0.14 16 23 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 24 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 25 H 0.17 3.00 8.06 -52.49 -0.42 2.58 16 26 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 27 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.13 2.47 7.41 -51.93 -0.38 2.09 16 30 H 0.10 1.52 7.89 -51.93 -0.41 1.11 16 31 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 LS Contribution 282.22 15.07 4.25 4.25 Total: -1.00 -30.79 282.22 -6.72 -37.51 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: -4.84 Total: 0.42 kcal Atomic # 6 Polarization: -18.39 SS G_CDS: -1.92 Total: -20.30 kcal Atomic # 7 Polarization: -38.97 SS G_CDS: 0.81 Total: -38.16 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -30.79 -6.72 -37.51 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260483376.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.916 kcal (2) G-P(sol) polarization free energy of solvation -30.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds