Wall clock time and date at job start Mon Mar 30 2020 03:06:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09002 * 109.46704 * 2 1 4 4 C 1.50701 * 109.47217 * 239.99950 * 2 1 3 5 5 H 1.07993 * 119.99970 * 245.46740 * 4 2 1 6 6 C 1.37878 * 119.99878 * 65.46271 * 4 2 1 7 7 N 1.31512 * 120.00054 * 9.58213 * 6 4 2 8 8 Si 1.86796 * 120.00038 * 189.58608 * 6 4 2 9 9 H 1.48498 * 109.47386 * 84.99090 * 8 6 4 10 10 H 1.48500 * 109.47586 * 204.99388 * 8 6 4 11 11 H 1.48502 * 109.46863 * 324.99235 * 8 6 4 12 12 C 1.50693 * 109.46992 * 119.99626 * 2 1 3 13 13 C 1.35320 * 126.04003 * 59.97922 * 12 2 1 14 14 N 1.34942 * 107.74834 * 180.02562 * 13 12 2 15 15 C 1.46506 * 126.04008 * 179.97438 * 14 13 12 16 16 N 1.40086 * 107.92411 * 0.02562 * 14 13 12 17 17 C 1.30833 * 108.20467 * 359.97438 * 16 14 13 18 18 C 1.50700 * 125.89541 * 180.26315 * 17 16 14 19 19 C 1.53002 * 117.50114 * 8.44104 * 18 17 16 20 20 C 1.52997 * 117.50229 * 299.77852 * 18 17 16 21 21 H 1.08998 * 109.46702 * 63.40598 * 1 2 3 22 22 H 1.09000 * 109.46690 * 183.40791 * 1 2 3 23 23 H 1.08999 * 109.46696 * 303.40631 * 1 2 3 24 24 H 0.97002 * 119.99964 * 179.97438 * 7 6 4 25 25 H 1.08001 * 126.12564 * 359.97438 * 13 12 2 26 26 H 1.08999 * 109.46699 * 89.99784 * 15 14 13 27 27 H 1.08997 * 109.47227 * 210.00194 * 15 14 13 28 28 H 1.09004 * 109.46658 * 330.00607 * 15 14 13 29 29 H 1.08999 * 115.55009 * 154.10570 * 18 17 16 30 30 H 1.08997 * 117.49599 * 359.97438 * 19 18 17 31 31 H 1.09004 * 117.50060 * 145.02100 * 19 18 17 32 32 H 1.08997 * 117.49989 * 214.97768 * 20 18 17 33 33 H 1.08997 * 117.49641 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.5786 -1.6371 -1.1338 6 6 1.7947 -0.1773 -2.4796 7 7 1.2999 1.0358 -2.5935 8 14 2.1754 -1.1783 -4.0101 9 1 1.0230 -2.0608 -4.3238 10 1 2.4224 -0.2619 -5.1523 11 1 3.3836 -2.0080 -3.7711 12 6 2.0324 -0.7103 1.2305 13 6 1.7816 -1.9973 1.5649 14 7 2.4080 -2.2482 2.7336 15 6 2.4011 -3.5208 3.4594 16 7 3.0650 -1.0764 3.1308 17 6 2.8393 -0.1556 2.2291 18 6 3.3635 1.2570 2.2585 19 6 4.3952 1.6056 3.3333 20 6 2.9632 2.1346 3.4461 21 1 -0.3633 0.4601 -0.9189 22 1 -0.3633 -1.0259 0.0611 23 1 -0.3633 0.5658 0.8579 24 1 1.1330 1.4110 -3.4723 25 1 1.1861 -2.6980 0.9985 26 1 3.2384 -4.1337 3.1258 27 1 2.4938 -3.3298 4.5285 28 1 1.4660 -4.0456 3.2636 29 1 3.4657 1.7408 1.2871 30 1 4.6944 0.8132 4.0193 31 1 5.1758 2.3190 3.0691 32 1 2.8024 3.1957 3.2562 33 1 2.3203 1.6903 4.2060 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260483376.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:07 Heat of formation + Delta-G solvation = 74.926199 kcal Electronic energy + Delta-G solvation = -14848.441160 eV Core-core repulsion = 12489.774095 eV Total energy + Delta-G solvation = -2358.667065 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.04531 -37.91027 -36.31574 -33.78768 -32.68179 -29.68033 -27.65890 -27.05796 -23.94762 -23.39727 -23.13550 -20.78656 -19.88443 -18.06969 -17.67668 -16.47359 -16.27686 -16.03409 -15.49154 -14.71929 -14.39925 -13.85314 -13.76190 -13.56158 -13.36909 -12.81709 -12.73001 -12.67923 -12.41099 -12.31921 -12.15618 -11.77537 -11.59442 -11.35155 -10.98643 -10.85683 -10.37190 -9.81795 -8.91075 -8.04115 -6.12704 1.05647 1.43696 1.44282 1.53267 1.83286 1.97205 2.49743 3.13209 3.24783 3.65990 3.84247 4.06721 4.25259 4.27985 4.47506 4.49211 4.69637 4.77164 4.78780 4.90923 4.98643 5.03016 5.16966 5.27151 5.31233 5.34396 5.40787 5.67343 5.89860 6.02925 6.07596 6.38487 6.47175 6.94064 6.97239 7.52816 9.02600 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.025441 B = 0.009396 C = 0.007832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.299923 B = 2979.395107 C = 3574.063535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.111 3.889 3 H 0.008 0.992 4 C -0.515 4.515 5 H 0.046 0.954 6 C 0.016 3.984 7 N -0.918 5.918 8 Si 0.947 3.053 9 H -0.272 1.272 10 H -0.286 1.286 11 H -0.274 1.274 12 C -0.209 4.209 13 C 0.045 3.955 14 N -0.386 5.386 15 C 0.100 3.900 16 N -0.324 5.324 17 C 0.085 3.915 18 C -0.103 4.103 19 C -0.151 4.151 20 C -0.150 4.150 21 H 0.038 0.962 22 H 0.037 0.963 23 H 0.022 0.978 24 H 0.260 0.740 25 H 0.183 0.817 26 H 0.080 0.920 27 H 0.093 0.907 28 H 0.109 0.891 29 H 0.106 0.894 30 H 0.093 0.907 31 H 0.116 0.884 32 H 0.117 0.883 33 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.570 -4.744 10.758 11.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.091 3.909 3 H 0.026 0.974 4 C -0.554 4.554 5 H 0.064 0.936 6 C -0.183 4.183 7 N -0.558 5.558 8 Si 0.773 3.227 9 H -0.197 1.197 10 H -0.212 1.212 11 H -0.199 1.199 12 C -0.220 4.220 13 C -0.100 4.100 14 N -0.170 5.170 15 C -0.040 4.040 16 N -0.148 5.148 17 C -0.079 4.079 18 C -0.124 4.124 19 C -0.188 4.188 20 C -0.188 4.188 21 H 0.057 0.943 22 H 0.056 0.944 23 H 0.041 0.959 24 H 0.069 0.931 25 H 0.200 0.800 26 H 0.098 0.902 27 H 0.112 0.888 28 H 0.127 0.873 29 H 0.124 0.876 30 H 0.112 0.888 31 H 0.135 0.865 32 H 0.135 0.865 33 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 2.081 -5.092 11.813 13.031 hybrid contribution -0.335 -0.253 -1.975 2.020 sum 1.745 -5.345 9.838 11.331 Atomic orbital electron populations 1.21549 0.98025 0.98777 0.98553 1.16988 0.91947 0.93818 0.88122 0.97402 1.21408 1.34873 1.07601 0.91474 0.93568 1.25662 0.95538 0.95497 1.01564 1.70082 1.46391 1.15182 1.24099 0.85748 0.78602 0.78848 0.79519 1.19733 1.21206 1.19873 1.20538 1.06106 0.95244 1.00122 1.22365 1.00492 0.97681 0.89461 1.48569 1.39679 1.10603 1.18101 1.22092 1.04778 0.79499 0.97628 1.76924 1.21148 0.92568 1.24145 1.21496 0.98000 0.95093 0.93293 1.20281 1.06385 0.89702 0.95997 1.22992 0.92583 1.03186 1.00079 1.23004 0.98117 0.99580 0.98114 0.94259 0.94385 0.95901 0.93087 0.79958 0.90195 0.88818 0.87266 0.87589 0.88831 0.86548 0.86519 0.89349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.40 8.98 71.99 0.65 -4.75 16 2 C 0.11 5.75 2.49 -12.28 -0.03 5.72 16 3 H 0.01 0.45 6.95 -2.39 -0.02 0.43 16 4 C -0.52 -28.67 8.33 25.60 0.21 -28.46 16 5 H 0.05 2.57 7.69 -2.91 -0.02 2.55 16 6 C 0.02 0.89 5.17 84.66 0.44 1.32 16 7 N -0.92 -53.58 12.16 21.45 0.26 -53.32 16 8 Si 0.95 43.85 29.55 68.60 2.03 45.88 16 9 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 10 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 11 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 12 C -0.21 -9.57 4.79 -20.15 -0.10 -9.67 16 13 C 0.04 1.75 10.76 83.54 0.90 2.65 16 14 N -0.39 -13.36 4.01 -369.55 -1.48 -14.84 16 15 C 0.10 2.14 11.47 127.77 1.47 3.60 16 16 N -0.32 -12.78 12.15 -47.39 -0.58 -13.36 16 17 C 0.09 3.64 6.75 43.10 0.29 3.93 16 18 C -0.10 -3.90 5.85 -11.54 -0.07 -3.96 16 19 C -0.15 -4.43 10.14 30.62 0.31 -4.12 16 20 C -0.15 -4.47 10.24 30.62 0.31 -4.15 16 21 H 0.04 2.07 6.84 -2.39 -0.02 2.05 16 22 H 0.04 1.68 7.91 -2.39 -0.02 1.66 16 23 H 0.02 1.00 8.14 -2.39 -0.02 0.99 16 24 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 25 H 0.18 6.30 8.06 -2.91 -0.02 6.27 16 26 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.11 4.36 7.41 -2.39 -0.02 4.34 16 30 H 0.09 2.81 7.89 -2.39 -0.02 2.79 16 31 H 0.12 2.84 8.14 -2.38 -0.02 2.82 16 32 H 0.12 2.95 8.14 -2.39 -0.02 2.93 16 33 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 Total: -1.00 -66.70 282.22 5.69 -61.01 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: 1.08 Total: 12.53 kcal Atomic # 6 Polarization: -42.27 SS G_CDS: 4.38 Total: -37.89 kcal Atomic # 7 Polarization: -79.73 SS G_CDS: -1.80 Total: -81.53 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -66.70 5.69 -61.01 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260483376.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.937 kcal (2) G-P(sol) polarization free energy of solvation -66.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds