Wall clock time and date at job start Mon Mar 30 2020 02:45:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47228 * 2 1 4 4 N 1.46504 * 109.46947 * 120.00190 * 2 1 3 5 5 C 1.36418 * 126.55223 * 300.15715 * 4 2 1 6 6 C 1.36224 * 107.18804 * 180.22707 * 5 4 2 7 7 C 1.50700 * 125.68546 * 179.77770 * 6 5 4 8 8 C 1.52999 * 117.50250 * 343.76564 * 7 6 5 9 9 C 1.53006 * 117.49704 * 275.10656 * 7 6 5 10 10 N 1.32750 * 108.62025 * 359.77078 * 6 5 4 11 11 C 1.32981 * 109.22902 * 0.02562 * 10 6 5 12 12 C 1.39996 * 125.96427 * 179.97438 * 11 10 6 13 13 H 1.08001 * 119.99699 * 186.21939 * 12 11 10 14 14 C 1.40229 * 120.00094 * 6.20778 * 12 11 10 15 15 N 1.30693 * 120.00089 * 184.19604 * 14 12 11 16 16 Si 1.86799 * 120.00245 * 4.20281 * 14 12 11 17 17 H 1.48496 * 109.47395 * 179.97438 * 16 14 12 18 18 H 1.48497 * 109.47010 * 300.00083 * 16 14 12 19 19 H 1.48509 * 109.46813 * 59.99594 * 16 14 12 20 20 H 1.08996 * 109.46991 * 300.00208 * 1 2 3 21 21 H 1.08998 * 109.46864 * 59.99853 * 1 2 3 22 22 H 1.09001 * 109.47202 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.46991 * 239.99792 * 2 1 3 24 24 H 1.09004 * 109.46991 * 59.99410 * 3 2 1 25 25 H 1.09001 * 109.47335 * 179.97438 * 3 2 1 26 26 H 1.08999 * 109.46850 * 300.00122 * 3 2 1 27 27 H 1.08000 * 126.40597 * 359.97438 * 5 4 2 28 28 H 1.09005 * 115.55181 * 129.44475 * 7 6 5 29 29 H 1.09002 * 117.49920 * 0.02562 * 8 7 6 30 30 H 1.08994 * 117.50361 * 145.02329 * 8 7 6 31 31 H 1.09000 * 117.49866 * 214.98110 * 9 7 6 32 32 H 1.09003 * 117.49854 * 359.97438 * 9 7 6 33 33 H 0.96999 * 119.99857 * 354.87525 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6907 1.1962 5 6 1.7701 -0.3449 2.4922 6 6 2.4166 -1.2482 3.2808 7 6 2.4248 -1.2525 4.7878 8 6 1.9814 0.0268 5.5004 9 6 3.4594 -0.3715 5.4911 10 7 3.0380 -2.1240 2.5004 11 6 2.8127 -1.8131 1.2272 12 6 3.3025 -2.5048 0.1129 13 1 3.1432 -2.1109 -0.8800 14 6 4.0001 -3.7089 0.2860 15 7 4.5281 -4.3123 -0.7460 16 14 4.1744 -4.4505 1.9916 17 1 4.9489 -5.7145 1.9050 18 1 4.8853 -3.4935 2.8771 19 1 2.8271 -4.7331 2.5485 20 1 -0.3633 0.5138 0.8899 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 1.8934 -0.5138 -0.8899 24 1 1.6766 1.9563 0.8900 25 1 3.1301 1.4425 0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.1758 0.4913 2.8300 28 1 2.1716 -2.2034 5.2566 29 1 1.6833 0.8714 4.8792 30 1 1.4367 -0.0824 6.4381 31 1 3.8863 -0.7426 6.4228 32 1 4.1343 0.2108 4.8638 33 1 4.3750 -3.9681 -1.6398 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260484983.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:53 Heat of formation + Delta-G solvation = 38.436364 kcal Electronic energy + Delta-G solvation = -15089.898477 eV Core-core repulsion = 12729.649093 eV Total energy + Delta-G solvation = -2360.249383 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.29997 -37.99977 -36.46720 -35.45847 -31.32024 -31.00843 -28.20660 -26.71633 -24.66466 -23.12757 -22.54687 -21.30458 -19.98540 -19.49739 -17.73574 -16.30706 -15.85353 -15.60952 -15.50289 -15.27668 -15.01271 -14.27437 -14.00419 -13.88871 -13.31456 -13.18934 -12.74120 -12.60924 -12.38741 -12.29845 -12.13588 -12.00922 -11.56637 -11.42515 -11.17160 -11.07551 -10.06491 -9.76466 -9.32819 -9.09495 -6.53960 1.32918 1.59963 1.78231 2.04613 2.35984 2.38934 2.52970 3.08939 3.30143 3.71936 3.86617 4.06409 4.12350 4.16164 4.27935 4.38033 4.60036 4.62536 4.71359 4.76655 4.82412 4.86647 4.93347 5.03272 5.11483 5.21505 5.33901 5.36732 5.38801 5.54774 5.92025 6.13822 6.47235 6.74017 7.06235 7.81903 8.13670 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.019018 B = 0.014629 C = 0.008972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.918166 B = 1913.556662 C = 3120.202136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.128 3.872 3 C -0.145 4.145 4 N -0.490 5.490 5 C -0.115 4.115 6 C 0.020 3.980 7 C -0.093 4.093 8 C -0.141 4.141 9 C -0.172 4.172 10 N -0.613 5.613 11 C 0.343 3.657 12 C -0.532 4.532 13 H 0.064 0.936 14 C 0.032 3.968 15 N -0.853 5.853 16 Si 1.168 2.832 17 H -0.320 1.320 18 H -0.279 1.279 19 H -0.297 1.297 20 H 0.069 0.931 21 H 0.097 0.903 22 H 0.039 0.961 23 H 0.072 0.928 24 H 0.069 0.931 25 H 0.037 0.963 26 H 0.098 0.902 27 H 0.178 0.822 28 H 0.100 0.900 29 H 0.098 0.902 30 H 0.121 0.879 31 H 0.111 0.889 32 H 0.075 0.925 33 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.374 11.095 6.039 14.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.025 3.975 3 C -0.203 4.203 4 N -0.177 5.177 5 C -0.245 4.245 6 C -0.109 4.109 7 C -0.112 4.112 8 C -0.178 4.178 9 C -0.209 4.209 10 N -0.340 5.340 11 C 0.096 3.904 12 C -0.572 4.572 13 H 0.083 0.917 14 C -0.183 4.183 15 N -0.480 5.480 16 Si 0.999 3.001 17 H -0.252 1.252 18 H -0.206 1.206 19 H -0.225 1.225 20 H 0.088 0.912 21 H 0.116 0.884 22 H 0.058 0.942 23 H 0.090 0.910 24 H 0.088 0.912 25 H 0.056 0.944 26 H 0.116 0.884 27 H 0.195 0.805 28 H 0.118 0.882 29 H 0.116 0.884 30 H 0.140 0.860 31 H 0.129 0.871 32 H 0.093 0.907 33 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.316 9.385 6.938 13.271 hybrid contribution -0.914 1.601 -1.829 2.597 sum -7.230 10.986 5.110 14.110 Atomic orbital electron populations 1.22038 0.92272 1.01891 1.04039 1.21355 0.96137 0.93957 0.86075 1.22044 1.00483 0.93684 1.04055 1.45574 1.41494 1.24334 1.06315 1.22069 1.13040 1.06490 0.82918 1.20045 1.01061 0.95448 0.94349 1.20070 1.07137 0.96432 0.87605 1.23006 0.96347 0.96445 1.02022 1.22950 0.92815 1.03207 1.01943 1.69315 1.32521 1.31894 1.00236 1.20291 0.91301 0.86287 0.92479 1.19302 1.37930 1.08329 0.91672 0.91742 1.27833 0.89069 0.93355 1.08039 1.70659 1.35384 1.41207 1.00780 0.81812 0.76574 0.72033 0.69634 1.25182 1.20556 1.22536 0.91169 0.88397 0.94226 0.90973 0.91188 0.94366 0.88381 0.80462 0.88239 0.88354 0.86048 0.87108 0.90677 0.91312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.99 9.25 71.98 0.67 -3.32 16 2 C 0.13 4.46 3.55 44.99 0.16 4.62 16 3 C -0.14 -3.99 9.25 71.98 0.67 -3.33 16 4 N -0.49 -21.80 2.66 -498.37 -1.33 -23.12 16 5 C -0.12 -4.68 9.92 83.51 0.83 -3.85 16 6 C 0.02 0.90 6.72 41.95 0.28 1.18 16 7 C -0.09 -3.36 6.33 -11.54 -0.07 -3.43 16 8 C -0.14 -3.58 10.01 30.62 0.31 -3.27 16 9 C -0.17 -5.13 10.24 30.62 0.31 -4.82 16 10 N -0.61 -33.35 6.41 -182.22 -1.17 -34.52 16 11 C 0.34 18.68 7.18 133.59 0.96 19.64 16 12 C -0.53 -30.89 9.45 23.18 0.22 -30.67 16 13 H 0.06 3.74 6.94 -2.91 -0.02 3.72 16 14 C 0.03 1.90 5.52 85.35 0.47 2.37 16 15 N -0.85 -50.15 13.65 21.88 0.30 -49.86 16 16 Si 1.17 62.34 25.88 68.60 1.78 64.12 16 17 H -0.32 -16.42 7.11 99.48 0.71 -15.72 16 18 H -0.28 -15.18 6.74 99.48 0.67 -14.51 16 19 H -0.30 -16.07 7.11 99.48 0.71 -15.37 16 20 H 0.07 1.75 7.96 -2.39 -0.02 1.74 16 21 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 22 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 23 H 0.07 2.81 6.70 -2.39 -0.02 2.80 16 24 H 0.07 1.75 7.96 -2.39 -0.02 1.73 16 25 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 27 H 0.18 5.72 7.33 -2.91 -0.02 5.70 16 28 H 0.10 3.58 8.14 -2.38 -0.02 3.56 16 29 H 0.10 2.35 7.11 -2.39 -0.02 2.34 16 30 H 0.12 2.35 8.14 -2.39 -0.02 2.33 16 31 H 0.11 2.79 8.14 -2.39 -0.02 2.77 16 32 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 33 H 0.28 15.68 8.72 -92.71 -0.81 14.87 16 Total: -1.00 -68.83 274.83 5.38 -63.45 By element: Atomic # 1 Polarization: 3.81 SS G_CDS: 1.01 Total: 4.82 kcal Atomic # 6 Polarization: -29.69 SS G_CDS: 4.80 Total: -24.89 kcal Atomic # 7 Polarization: -105.30 SS G_CDS: -2.20 Total: -107.50 kcal Atomic # 14 Polarization: 62.34 SS G_CDS: 1.78 Total: 64.12 kcal Total: -68.83 5.38 -63.45 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260484983.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.884 kcal (2) G-P(sol) polarization free energy of solvation -68.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds