Wall clock time and date at job start Mon Mar 30 2020 02:56:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 109.46053 * 2 1 4 4 C 1.53151 * 109.46665 * 119.98557 * 2 1 3 5 5 C 1.53393 * 109.23448 * 189.49922 * 4 2 1 6 6 C 1.51044 * 108.21543 * 311.17898 * 5 4 2 7 7 N 1.30088 * 127.38906 * 195.93079 * 6 5 4 8 8 C 1.34293 * 109.20744 * 179.97438 * 7 6 5 9 9 C 1.34849 * 108.07324 * 0.03663 * 8 7 6 10 10 C 1.50707 * 126.65644 * 179.97438 * 9 8 7 11 11 C 1.50696 * 109.47007 * 85.01559 * 10 9 8 12 12 H 1.07999 * 120.00319 * 0.02562 * 11 10 9 13 13 C 1.37885 * 119.99717 * 180.02562 * 11 10 9 14 14 N 1.31516 * 119.99913 * 180.02562 * 13 11 10 15 15 Si 1.86798 * 119.99766 * 0.02562 * 13 11 10 16 16 H 1.48500 * 109.47353 * 269.99586 * 15 13 11 17 17 H 1.48501 * 109.47293 * 30.00037 * 15 13 11 18 18 H 1.48504 * 109.46680 * 149.99835 * 15 13 11 19 19 N 1.35426 * 123.97856 * 16.19509 * 6 5 4 20 20 C 1.46475 * 124.82142 * 359.61971 * 19 6 5 21 21 H 1.08997 * 109.46978 * 300.01369 * 1 2 3 22 22 H 1.09002 * 109.47031 * 60.01013 * 1 2 3 23 23 H 1.08995 * 109.47114 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.50813 * 69.57190 * 4 2 1 25 25 H 1.09003 * 109.55095 * 309.45203 * 4 2 1 26 26 H 1.09010 * 109.71194 * 191.50022 * 5 4 2 27 27 H 1.08994 * 109.71767 * 70.86462 * 5 4 2 28 28 H 1.08002 * 125.96148 * 180.02562 * 8 7 6 29 29 H 1.09005 * 109.46877 * 325.01836 * 10 9 8 30 30 H 1.09002 * 109.46993 * 205.02183 * 10 9 8 31 31 H 0.97001 * 119.99646 * 179.97438 * 14 13 11 32 32 H 1.09003 * 109.77582 * 257.69586 * 20 19 6 33 33 H 1.08995 * 109.55586 * 137.31016 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0404 -0.7217 1.2507 5 6 3.5556 -0.5148 1.3705 6 6 4.1822 -0.8281 0.0323 7 7 5.4385 -1.0541 -0.2181 8 6 5.5912 -1.2941 -1.5306 9 6 4.3786 -1.2120 -2.1147 10 6 4.0689 -1.4080 -3.5765 11 6 3.8817 -2.8766 -3.8578 12 1 3.9769 -3.5961 -3.0580 13 6 3.5888 -3.3018 -5.1363 14 7 3.4249 -4.5834 -5.3817 15 14 3.4247 -2.0574 -6.5198 16 1 2.0135 -1.6050 -6.6139 17 1 4.3011 -0.8910 -6.2429 18 1 3.8293 -2.6871 -7.8024 19 7 3.4878 -0.9125 -1.1273 20 6 2.0408 -0.7222 -1.2515 21 1 -0.3633 0.5140 0.8898 22 1 -0.3633 0.5137 -0.8901 23 1 -0.3633 -1.0276 0.0005 24 1 1.8236 -1.7869 1.1703 25 1 1.5466 -0.3153 2.1334 26 1 3.9590 -1.1836 2.1310 27 1 3.7652 0.5199 1.6415 28 1 6.5227 -1.5142 -2.0310 29 1 4.8941 -1.0254 -4.1772 30 1 3.1553 -0.8701 -3.8297 31 1 3.2185 -4.8825 -6.2811 32 1 1.5479 -1.6903 -1.3414 33 1 1.8265 -0.1197 -2.1341 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260495071.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:05 Heat of formation + Delta-G solvation = 16.221318 kcal Electronic energy + Delta-G solvation = -14988.841894 eV Core-core repulsion = 12627.629194 eV Total energy + Delta-G solvation = -2361.212700 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.19534 -38.14936 -35.60185 -34.18241 -32.60283 -31.87087 -28.45390 -27.18013 -25.20102 -23.79948 -22.41385 -21.19579 -19.78144 -19.05318 -17.54624 -16.77068 -16.28984 -15.54843 -15.29369 -15.25698 -14.97014 -14.72742 -14.11619 -13.81046 -13.66087 -13.37553 -12.97499 -12.76383 -12.51075 -12.35189 -11.99197 -11.94624 -11.74899 -11.70471 -11.55141 -10.91824 -10.78545 -10.37126 -8.98424 -8.34369 -6.41752 1.22953 1.33698 1.37595 1.49119 1.98226 2.21292 2.31523 2.99247 3.43098 3.58017 3.70720 3.75726 4.17561 4.30334 4.38715 4.49385 4.51414 4.59230 4.64681 4.70094 4.86998 4.94137 4.96092 5.02455 5.12142 5.18762 5.31043 5.40636 5.44756 5.65792 5.88445 6.18583 6.44563 6.63531 7.19847 7.22829 8.82326 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.031312 B = 0.008768 C = 0.007599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.009599 B = 3192.633218 C = 3683.800769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.096 4.096 3 H 0.088 0.912 4 C -0.114 4.114 5 C -0.026 4.026 6 C 0.181 3.819 7 N -0.523 5.523 8 C -0.073 4.073 9 C 0.012 3.988 10 C 0.065 3.935 11 C -0.523 4.523 12 H 0.019 0.981 13 C 0.012 3.988 14 N -0.946 5.946 15 Si 0.953 3.047 16 H -0.260 1.260 17 H -0.245 1.245 18 H -0.281 1.281 19 N -0.456 5.456 20 C 0.100 3.900 21 H 0.087 0.913 22 H 0.062 0.938 23 H 0.056 0.944 24 H 0.057 0.943 25 H 0.118 0.882 26 H 0.097 0.903 27 H 0.106 0.894 28 H 0.163 0.837 29 H 0.046 0.954 30 H 0.032 0.968 31 H 0.270 0.730 32 H 0.070 0.930 33 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.462 12.799 10.922 18.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.114 4.114 3 H 0.107 0.893 4 C -0.152 4.152 5 C -0.065 4.065 6 C -0.081 4.081 7 N -0.242 5.242 8 C -0.219 4.219 9 C -0.104 4.104 10 C 0.026 3.974 11 C -0.562 4.562 12 H 0.037 0.963 13 C -0.186 4.186 14 N -0.586 5.586 15 Si 0.775 3.225 16 H -0.185 1.185 17 H -0.168 1.168 18 H -0.206 1.206 19 N -0.139 5.139 20 C -0.021 4.021 21 H 0.106 0.894 22 H 0.081 0.919 23 H 0.075 0.925 24 H 0.076 0.924 25 H 0.136 0.864 26 H 0.116 0.884 27 H 0.124 0.876 28 H 0.180 0.820 29 H 0.065 0.935 30 H 0.050 0.950 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -7.015 12.695 11.336 18.409 hybrid contribution -0.239 -0.538 -1.729 1.827 sum -7.254 12.157 9.607 17.109 Atomic orbital electron populations 1.21746 0.91466 1.02762 1.03641 1.21484 0.98184 0.99744 0.92018 0.89340 1.21779 0.93439 1.00957 0.99007 1.20359 0.94794 1.03994 0.87329 1.24086 0.87431 1.05724 0.90872 1.69885 1.17503 1.20878 1.15958 1.22100 0.97751 1.11496 0.90562 1.21483 0.90254 1.05464 0.93199 1.18036 0.97605 0.95545 0.86197 1.21026 1.48968 0.91400 0.94762 0.96280 1.25983 0.93767 0.97401 1.01446 1.70060 1.49505 1.16580 1.22456 0.85624 0.79945 0.79412 0.77523 1.18483 1.16789 1.20642 1.45338 1.08942 1.52267 1.07351 1.22254 0.76207 1.01927 1.01741 0.89392 0.91913 0.92501 0.92439 0.86380 0.88426 0.87620 0.81985 0.93547 0.94970 0.92145 0.91145 0.89384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 9.17 71.98 0.66 -1.37 16 2 C -0.10 -1.91 2.73 -10.66 -0.03 -1.94 16 3 H 0.09 1.65 8.12 -2.38 -0.02 1.63 16 4 C -0.11 -2.13 5.26 30.78 0.16 -1.97 16 5 C -0.03 -0.62 6.33 30.09 0.19 -0.43 16 6 C 0.18 6.69 7.65 138.23 1.06 7.75 16 7 N -0.52 -22.74 11.24 -187.51 -2.11 -24.85 16 8 C -0.07 -3.41 11.80 83.54 0.99 -2.42 16 9 C 0.01 0.56 6.17 41.09 0.25 0.81 16 10 C 0.06 3.14 4.41 29.10 0.13 3.27 16 11 C -0.52 -30.84 9.65 25.60 0.25 -30.59 16 12 H 0.02 1.28 7.98 -2.91 -0.02 1.26 16 13 C 0.01 0.68 5.47 84.66 0.46 1.14 16 14 N -0.95 -59.26 13.96 21.45 0.30 -58.96 16 15 Si 0.95 42.98 27.47 68.60 1.88 44.87 16 16 H -0.26 -11.02 7.11 99.48 0.71 -10.32 16 17 H -0.24 -10.21 6.54 99.48 0.65 -9.56 16 18 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 19 N -0.46 -17.82 3.13 -499.36 -1.56 -19.38 16 20 C 0.10 3.06 5.97 86.47 0.52 3.57 16 21 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 22 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 23 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 24 H 0.06 1.25 8.12 -2.39 -0.02 1.23 16 25 H 0.12 1.32 8.12 -2.39 -0.02 1.31 16 26 H 0.10 2.17 8.14 -2.38 -0.02 2.15 16 27 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 28 H 0.16 7.17 8.06 -2.91 -0.02 7.15 16 29 H 0.05 2.20 7.20 -2.38 -0.02 2.18 16 30 H 0.03 1.45 7.00 -2.39 -0.02 1.44 16 31 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 32 H 0.07 2.33 8.12 -2.39 -0.02 2.31 16 33 H 0.09 2.59 7.74 -2.39 -0.02 2.57 16 Total: -1.00 -73.58 270.65 4.16 -69.42 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: 1.02 Total: 11.07 kcal Atomic # 6 Polarization: -26.80 SS G_CDS: 4.63 Total: -22.16 kcal Atomic # 7 Polarization: -99.82 SS G_CDS: -3.37 Total: -103.19 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 1.88 Total: 44.87 kcal Total: -73.58 4.16 -69.42 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260495071.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.638 kcal (2) G-P(sol) polarization free energy of solvation -73.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.416 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds