Wall clock time and date at job start Mon Mar 30 2020 03:05:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.46640 * 2 1 4 4 C 1.50699 * 109.47068 * 239.99691 * 2 1 3 5 5 H 1.07997 * 119.99927 * 245.44829 * 4 2 1 6 6 C 1.37876 * 119.99875 * 65.45424 * 4 2 1 7 7 N 1.31515 * 120.00296 * 9.68093 * 6 4 2 8 8 Si 1.86797 * 119.99885 * 189.68441 * 6 4 2 9 9 H 1.48500 * 109.47177 * 84.99355 * 8 6 4 10 10 H 1.48498 * 109.47325 * 204.98808 * 8 6 4 11 11 H 1.48499 * 109.47366 * 324.99226 * 8 6 4 12 12 C 1.50702 * 109.47056 * 119.99658 * 2 1 3 13 13 C 1.35316 * 126.12697 * 85.00491 * 12 2 1 14 14 C 1.39869 * 107.92031 * 180.02562 * 13 12 2 15 15 C 1.50697 * 125.89782 * 180.26381 * 14 13 12 16 16 C 1.53007 * 117.49729 * 343.45714 * 15 14 13 17 17 C 1.53003 * 117.50124 * 274.79875 * 15 14 13 18 18 N 1.30828 * 108.20412 * 359.97438 * 14 13 12 19 19 N 1.34949 * 126.12569 * 265.00068 * 12 2 1 20 20 C 1.46492 * 126.03796 * 0.02562 * 19 12 2 21 21 H 1.09001 * 109.46878 * 183.51789 * 1 2 3 22 22 H 1.09000 * 109.47185 * 303.50834 * 1 2 3 23 23 H 1.08993 * 109.47050 * 63.51756 * 1 2 3 24 24 H 0.96999 * 120.00147 * 180.02562 * 7 6 4 25 25 H 1.08002 * 126.03678 * 0.04008 * 13 12 2 26 26 H 1.09002 * 115.55388 * 129.12391 * 15 14 13 27 27 H 1.08997 * 117.49836 * 0.02562 * 16 15 14 28 28 H 1.09004 * 117.49822 * 145.02261 * 16 15 14 29 29 H 1.08999 * 117.49717 * 214.98182 * 17 15 14 30 30 H 1.09001 * 117.49535 * 359.97438 * 17 15 14 31 31 H 1.08998 * 109.47250 * 269.97694 * 20 19 12 32 32 H 1.09001 * 109.47642 * 29.97754 * 20 19 12 33 33 H 1.09008 * 109.46777 * 149.97454 * 20 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.5788 -1.6370 -1.1337 6 6 1.7945 -0.1775 -2.4796 7 7 1.3013 1.0363 -2.5937 8 14 2.1726 -1.1797 -4.0100 9 1 1.0186 -2.0606 -4.3224 10 1 2.4198 -0.2641 -5.1527 11 1 3.3797 -2.0111 -3.7716 12 6 2.0324 -0.7103 1.2305 13 6 2.2086 -2.0452 1.3651 14 6 2.6868 -2.2882 2.6568 15 6 3.0262 -3.6382 3.2340 16 6 2.4854 -4.8725 2.5094 17 6 1.8858 -4.4491 3.8526 18 7 2.7943 -1.1404 3.2754 19 7 2.3871 -0.1291 2.3956 20 6 2.3516 1.3057 2.6889 21 1 -0.3633 -1.0257 0.0631 22 1 -0.3633 0.5673 0.8569 23 1 -0.3633 0.4582 -0.9198 24 1 1.1336 1.4111 -3.4725 25 1 2.0145 -2.7912 0.6085 26 1 4.0094 -3.7175 3.6979 27 1 1.8845 -4.7081 1.6150 28 1 3.1127 -5.7640 2.4970 29 1 2.1187 -5.0621 4.7233 30 1 0.8900 -4.0059 3.8425 31 1 3.3081 1.7550 2.4215 32 1 1.5555 1.7752 2.1110 33 1 2.1648 1.4547 3.7524 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260569615.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:24 Heat of formation + Delta-G solvation = 88.236016 kcal Electronic energy + Delta-G solvation = -14804.804347 eV Core-core repulsion = 12446.714439 eV Total energy + Delta-G solvation = -2358.089908 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.52880 -36.83906 -34.36466 -32.26971 -31.12552 -27.98821 -26.26282 -25.15991 -22.79535 -22.25236 -21.75345 -19.09385 -18.37939 -16.06696 -15.95066 -15.35285 -14.64705 -14.44155 -14.00015 -13.40586 -12.86887 -12.33612 -12.17309 -11.93082 -11.73298 -11.45541 -11.25299 -11.05760 -10.87048 -10.68946 -10.48428 -10.34921 -10.26975 -9.73956 -9.49760 -9.10366 -8.44372 -8.20521 -7.55881 -6.12557 -4.13467 2.68798 3.22604 3.28717 3.35095 3.38956 3.54686 4.16817 4.39339 4.86202 5.14252 5.20298 5.22830 5.34632 5.63337 5.67436 5.80949 5.86762 5.92815 6.00185 6.25199 6.35205 6.43413 6.62010 6.70229 6.85762 6.95711 7.02585 7.46875 7.53475 7.68102 7.82878 7.93443 8.27807 8.57210 8.88652 9.50105 10.97362 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.026859 B = 0.009032 C = 0.007325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.247111 B = 3099.384452 C = 3821.776369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.095 3.905 3 H 0.044 0.956 4 C -0.509 4.509 5 H 0.065 0.935 6 C 0.064 3.936 7 N -0.890 5.890 8 Si 0.894 3.106 9 H -0.278 1.278 10 H -0.287 1.287 11 H -0.273 1.273 12 C 0.138 3.862 13 C -0.273 4.273 14 C 0.092 3.908 15 C -0.070 4.070 16 C -0.167 4.167 17 C -0.170 4.170 18 N -0.323 5.323 19 N -0.385 5.385 20 C 0.108 3.892 21 H 0.035 0.965 22 H 0.011 0.989 23 H 0.073 0.927 24 H 0.262 0.738 25 H 0.141 0.859 26 H 0.112 0.888 27 H 0.102 0.898 28 H 0.096 0.904 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.067 0.933 32 H 0.086 0.914 33 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.413 -4.924 8.291 9.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.075 3.925 3 H 0.062 0.938 4 C -0.547 4.547 5 H 0.083 0.917 6 C -0.138 4.138 7 N -0.528 5.528 8 Si 0.721 3.279 9 H -0.204 1.204 10 H -0.213 1.213 11 H -0.198 1.198 12 C 0.012 3.988 13 C -0.302 4.302 14 C -0.074 4.074 15 C -0.090 4.090 16 C -0.205 4.205 17 C -0.208 4.208 18 N -0.145 5.145 19 N -0.167 5.167 20 C -0.034 4.034 21 H 0.054 0.946 22 H 0.030 0.970 23 H 0.092 0.908 24 H 0.072 0.928 25 H 0.159 0.841 26 H 0.130 0.870 27 H 0.120 0.880 28 H 0.114 0.886 29 H 0.112 0.888 30 H 0.112 0.888 31 H 0.085 0.915 32 H 0.105 0.895 33 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.692 -4.014 9.280 10.134 hybrid contribution 0.007 -0.696 -1.645 1.786 sum 0.700 -4.710 7.635 8.998 Atomic orbital electron populations 1.21696 0.97209 0.99278 1.00007 1.17589 0.92523 0.95752 0.86661 0.93833 1.21049 1.35861 1.08356 0.89434 0.91680 1.24938 0.95115 0.94657 0.99061 1.69951 1.44968 1.13904 1.24015 0.86571 0.78899 0.80100 0.82312 1.20410 1.21314 1.19783 1.22125 0.94692 0.93579 0.88436 1.20918 1.16218 0.95556 0.97468 1.21202 1.00000 0.92424 0.93726 1.20025 0.98254 0.86890 1.03786 1.22999 1.03733 0.97219 0.96526 1.22947 0.98156 1.03017 0.96666 1.77028 1.25427 0.95256 1.16788 1.48357 1.52242 1.06063 1.10037 1.21671 1.03054 0.76366 1.02327 0.94590 0.96964 0.90814 0.92797 0.84129 0.87043 0.87963 0.88588 0.88799 0.88809 0.91486 0.89512 0.90402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.86 9.05 37.16 0.34 -2.52 16 2 C 0.09 2.33 2.18 -92.92 -0.20 2.13 16 3 H 0.04 1.14 7.44 -51.93 -0.39 0.75 16 4 C -0.51 -13.61 8.22 -34.44 -0.28 -13.89 16 5 H 0.07 1.75 6.70 -52.49 -0.35 1.40 16 6 C 0.06 1.73 5.17 -17.82 -0.09 1.63 16 7 N -0.89 -24.67 12.17 55.43 0.67 -23.99 16 8 Si 0.89 20.84 29.55 -169.99 -5.02 15.82 16 9 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 10 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 12 C 0.14 3.16 5.85 -82.26 -0.48 2.68 16 13 C -0.27 -5.96 9.03 -40.01 -0.36 -6.32 16 14 C 0.09 1.83 6.85 -82.41 -0.56 1.27 16 15 C -0.07 -1.09 6.33 -91.77 -0.58 -1.67 16 16 C -0.17 -2.22 10.02 -26.69 -0.27 -2.48 16 17 C -0.17 -2.23 10.24 -26.69 -0.27 -2.50 16 18 N -0.32 -6.81 12.58 33.67 0.42 -6.39 16 19 N -0.38 -8.07 4.01 -63.89 -0.26 -8.32 16 20 C 0.11 1.76 11.06 59.84 0.66 2.43 16 21 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 22 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 23 H 0.07 1.83 6.84 -51.93 -0.36 1.48 16 24 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 25 H 0.14 3.01 6.89 -52.49 -0.36 2.65 16 26 H 0.11 1.60 8.14 -51.93 -0.42 1.17 16 27 H 0.10 1.45 7.16 -51.93 -0.37 1.08 16 28 H 0.10 1.05 8.14 -51.93 -0.42 0.62 16 29 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 31 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.09 1.36 7.55 -51.93 -0.39 0.97 16 33 H 0.08 1.08 8.14 -51.92 -0.42 0.66 16 LS Contribution 279.64 15.07 4.21 4.21 Total: -1.00 -29.66 279.64 -6.81 -36.47 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -4.73 Total: 1.45 kcal Atomic # 6 Polarization: -17.14 SS G_CDS: -2.11 Total: -19.25 kcal Atomic # 7 Polarization: -39.55 SS G_CDS: 0.84 Total: -38.70 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -29.66 -6.81 -36.47 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260569615.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.705 kcal (2) G-P(sol) polarization free energy of solvation -29.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds