Wall clock time and date at job start Mon Mar 30 2020 03:13:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.40310 * 126.00472 * 2 1 4 4 C 1.30132 * 108.12544 * 179.97438 * 3 2 1 5 5 C 1.40488 * 108.22317 * 0.10272 * 4 3 2 6 6 C 1.34570 * 108.04121 * 359.87365 * 5 4 3 7 7 C 1.50698 * 126.19078 * 180.02562 * 6 5 4 8 8 C 1.50700 * 109.47232 * 270.02555 * 7 6 5 9 9 H 1.07998 * 119.99485 * 0.02562 * 8 7 6 10 10 C 1.37873 * 120.00245 * 179.97438 * 8 7 6 11 11 N 1.31509 * 120.00001 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 119.99996 * 180.02562 * 10 8 7 13 13 H 1.48495 * 109.46960 * 90.00389 * 12 10 8 14 14 H 1.48499 * 109.46998 * 210.00351 * 12 10 8 15 15 H 1.48501 * 109.46907 * 330.00353 * 12 10 8 16 16 C 1.50882 * 123.63378 * 179.69802 * 5 4 3 17 17 C 1.53394 * 108.19416 * 343.46869 * 16 5 4 18 18 C 1.53120 * 109.73516 * 50.54705 * 17 16 5 19 19 C 1.50945 * 128.28808 * 180.13825 * 4 3 2 20 20 H 1.08996 * 109.47266 * 90.01946 * 1 2 3 21 21 H 1.09002 * 109.47286 * 210.02450 * 1 2 3 22 22 H 1.09003 * 109.47068 * 330.01882 * 1 2 3 23 23 H 1.09004 * 109.47478 * 30.02997 * 7 6 5 24 24 H 1.09000 * 109.47251 * 150.02888 * 7 6 5 25 25 H 0.97003 * 120.00561 * 179.97438 * 11 10 8 26 26 H 1.09000 * 109.71973 * 103.14246 * 16 5 4 27 27 H 1.08998 * 109.72247 * 223.79519 * 16 5 4 28 28 H 1.08997 * 109.42661 * 170.61402 * 17 16 5 29 29 H 1.08997 * 109.42842 * 290.46841 * 17 16 5 30 30 H 1.09010 * 109.47790 * 168.20426 * 18 17 16 31 31 H 1.08997 * 109.42312 * 48.34671 * 18 17 16 32 32 H 1.09002 * 109.71658 * 283.02963 * 19 4 3 33 33 H 1.09001 * 109.71693 * 43.63041 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2898 1.1351 0.0000 4 6 3.5283 0.7355 0.0006 5 6 3.5367 -0.6693 -0.0015 6 6 2.2597 -1.0938 -0.0004 7 6 1.7989 -2.5285 -0.0013 8 6 1.6442 -3.0056 -1.4224 9 1 1.8586 -2.3368 -2.2428 10 6 1.2300 -4.2961 -1.6752 11 7 0.9694 -5.1107 -0.6762 12 14 1.0391 -4.8876 -3.4368 13 1 2.3215 -5.4721 -3.9045 14 1 -0.0272 -5.9193 -3.4997 15 1 0.6710 -3.7417 -4.3066 16 6 4.7979 -1.4975 -0.0081 17 6 5.9632 -0.5920 -0.4266 18 6 5.9573 0.6832 0.4210 19 6 4.7821 1.5760 0.0036 20 1 -0.3633 -0.0003 -1.0276 21 1 -0.3634 -0.8898 0.5142 22 1 -0.3633 0.8902 0.5136 23 1 2.5354 -3.1471 0.5115 24 1 0.8408 -2.6028 0.5131 25 1 0.6777 -6.0186 -0.8540 26 1 4.9817 -1.8958 0.9897 27 1 4.6958 -2.3174 -0.7190 28 1 6.9046 -1.1210 -0.2786 29 1 5.8577 -0.3283 -1.4789 30 1 6.8929 1.2227 0.2726 31 1 5.8556 0.4185 1.4734 32 1 4.9599 1.9749 -0.9950 33 1 4.6733 2.3962 0.7132 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260577103.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:36 Heat of formation + Delta-G solvation = 46.684244 kcal Electronic energy + Delta-G solvation = -15010.586020 eV Core-core repulsion = 12650.694292 eV Total energy + Delta-G solvation = -2359.891728 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.69298 -36.19785 -33.60443 -32.00839 -31.26653 -29.23135 -26.68913 -26.31853 -23.15831 -22.53957 -21.21542 -18.61138 -18.21549 -16.46525 -15.43418 -14.91861 -14.56761 -14.24720 -14.00443 -13.41910 -12.99373 -12.46128 -12.33231 -12.10430 -11.96465 -11.85973 -11.33032 -11.09651 -10.94763 -10.67362 -10.53984 -10.47057 -10.25910 -9.77974 -9.55738 -9.50852 -8.51523 -8.21622 -7.32233 -6.13640 -4.18105 2.77884 3.25588 3.29410 3.32149 3.36335 3.57904 4.37879 4.95032 5.20598 5.22219 5.26561 5.48502 5.62622 5.79031 5.90929 5.91507 5.98178 6.02256 6.02776 6.16163 6.28955 6.38009 6.42464 6.65220 6.75425 6.80015 7.02462 7.35029 7.51551 7.54319 7.81724 7.92037 8.21196 8.58801 8.85915 9.46521 10.95947 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.029681 B = 0.009148 C = 0.007803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.126082 B = 3059.913337 C = 3587.687482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.384 5.384 3 N -0.323 5.323 4 C 0.070 3.930 5 C -0.264 4.264 6 C 0.144 3.856 7 C 0.074 3.926 8 C -0.512 4.512 9 H 0.057 0.943 10 C 0.062 3.938 11 N -0.892 5.892 12 Si 0.896 3.104 13 H -0.278 1.278 14 H -0.285 1.285 15 H -0.274 1.274 16 C -0.031 4.031 17 C -0.115 4.115 18 C -0.112 4.112 19 C -0.031 4.031 20 H 0.067 0.933 21 H 0.087 0.913 22 H 0.073 0.927 23 H 0.046 0.954 24 H 0.029 0.971 25 H 0.264 0.736 26 H 0.056 0.944 27 H 0.074 0.926 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.421 8.197 1.845 9.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.029 4.029 2 N -0.166 5.166 3 N -0.144 5.144 4 C -0.097 4.097 5 C -0.275 4.275 6 C 0.018 3.982 7 C 0.036 3.964 8 C -0.550 4.550 9 H 0.075 0.925 10 C -0.140 4.140 11 N -0.531 5.531 12 Si 0.724 3.276 13 H -0.204 1.204 14 H -0.211 1.211 15 H -0.199 1.199 16 C -0.069 4.069 17 C -0.153 4.153 18 C -0.150 4.150 19 C -0.070 4.070 20 H 0.086 0.914 21 H 0.106 0.894 22 H 0.092 0.908 23 H 0.064 0.936 24 H 0.047 0.953 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.092 0.908 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.093 0.907 33 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.390 9.031 1.890 10.218 hybrid contribution 0.125 -1.100 -1.001 1.492 sum 4.515 7.931 0.889 9.170 Atomic orbital electron populations 1.21630 0.75174 1.03187 1.02875 1.48300 1.05905 1.03247 1.59192 1.76779 1.01173 1.08843 1.27637 1.22085 0.93004 0.94100 1.00514 1.19560 0.94355 0.92847 1.20735 1.21602 0.90049 0.91979 0.94564 1.18033 0.97249 0.82693 0.98425 1.20925 1.45871 0.97179 0.91066 0.92507 1.24965 0.95125 0.96547 0.97373 1.69940 1.45637 1.06724 1.30760 0.86513 0.77971 0.78541 0.84586 1.20409 1.21090 1.19877 1.19831 0.89958 0.96353 1.00794 1.21563 0.98132 0.95829 0.99730 1.21541 0.96783 0.96310 1.00387 1.19982 0.89256 0.96073 1.01725 0.91419 0.89433 0.90801 0.93599 0.95313 0.92669 0.92509 0.90787 0.92265 0.92138 0.91929 0.91824 0.90731 0.90994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.99 11.28 59.85 0.67 2.66 16 2 N -0.38 -8.32 4.02 -64.01 -0.26 -8.58 16 3 N -0.32 -6.91 12.56 33.75 0.42 -6.49 16 4 C 0.07 1.40 7.10 -82.35 -0.58 0.81 16 5 C -0.26 -5.62 5.88 -104.98 -0.62 -6.24 16 6 C 0.14 3.34 6.11 -82.41 -0.50 2.83 16 7 C 0.07 1.89 5.06 -29.04 -0.15 1.74 16 8 C -0.51 -14.00 9.09 -34.44 -0.31 -14.31 16 9 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 10 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 11 N -0.89 -25.40 13.29 55.43 0.74 -24.67 16 12 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16 13 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 14 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 15 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 16 C -0.03 -0.57 5.97 -27.59 -0.16 -0.74 16 17 C -0.11 -1.68 5.87 -26.47 -0.16 -1.84 16 18 C -0.11 -1.48 5.87 -26.48 -0.16 -1.63 16 19 C -0.03 -0.47 6.31 -27.57 -0.17 -0.64 16 20 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 21 H 0.09 1.49 7.06 -51.93 -0.37 1.13 16 22 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 23 H 0.05 1.22 8.01 -51.93 -0.42 0.80 16 24 H 0.03 0.75 7.09 -51.93 -0.37 0.38 16 25 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 26 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 27 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.06 0.91 8.10 -51.93 -0.42 0.49 16 30 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16 31 H 0.06 0.85 8.10 -51.93 -0.42 0.43 16 32 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 274.28 15.07 4.13 4.13 Total: -1.00 -30.53 274.28 -7.14 -37.66 By element: Atomic # 1 Polarization: 2.49 SS G_CDS: -4.92 Total: -2.42 kcal Atomic # 6 Polarization: -13.52 SS G_CDS: -2.24 Total: -15.75 kcal Atomic # 7 Polarization: -40.64 SS G_CDS: 0.90 Total: -39.73 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -30.53 -7.14 -37.66 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260577103.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.349 kcal (2) G-P(sol) polarization free energy of solvation -30.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds