Wall clock time and date at job start Mon Mar 30 2020 03:13:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.40310 * 126.00472 * 2 1 4 4 C 1.30132 * 108.12544 * 179.97438 * 3 2 1 5 5 C 1.40488 * 108.22317 * 0.10272 * 4 3 2 6 6 C 1.34570 * 108.04121 * 359.87365 * 5 4 3 7 7 C 1.50698 * 126.19078 * 180.02562 * 6 5 4 8 8 C 1.50700 * 109.47232 * 270.02555 * 7 6 5 9 9 H 1.07998 * 119.99485 * 0.02562 * 8 7 6 10 10 C 1.37873 * 120.00245 * 179.97438 * 8 7 6 11 11 N 1.31509 * 120.00001 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 119.99996 * 180.02562 * 10 8 7 13 13 H 1.48495 * 109.46960 * 90.00389 * 12 10 8 14 14 H 1.48499 * 109.46998 * 210.00351 * 12 10 8 15 15 H 1.48501 * 109.46907 * 330.00353 * 12 10 8 16 16 C 1.50882 * 123.63378 * 179.69802 * 5 4 3 17 17 C 1.53394 * 108.19416 * 343.46869 * 16 5 4 18 18 C 1.53120 * 109.73516 * 50.54705 * 17 16 5 19 19 C 1.50945 * 128.28808 * 180.13825 * 4 3 2 20 20 H 1.08996 * 109.47266 * 90.01946 * 1 2 3 21 21 H 1.09002 * 109.47286 * 210.02450 * 1 2 3 22 22 H 1.09003 * 109.47068 * 330.01882 * 1 2 3 23 23 H 1.09004 * 109.47478 * 30.02997 * 7 6 5 24 24 H 1.09000 * 109.47251 * 150.02888 * 7 6 5 25 25 H 0.97003 * 120.00561 * 179.97438 * 11 10 8 26 26 H 1.09000 * 109.71973 * 103.14246 * 16 5 4 27 27 H 1.08998 * 109.72247 * 223.79519 * 16 5 4 28 28 H 1.08997 * 109.42661 * 170.61402 * 17 16 5 29 29 H 1.08997 * 109.42842 * 290.46841 * 17 16 5 30 30 H 1.09010 * 109.47790 * 168.20426 * 18 17 16 31 31 H 1.08997 * 109.42312 * 48.34671 * 18 17 16 32 32 H 1.09002 * 109.71658 * 283.02963 * 19 4 3 33 33 H 1.09001 * 109.71693 * 43.63041 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2898 1.1351 0.0000 4 6 3.5283 0.7355 0.0006 5 6 3.5367 -0.6693 -0.0015 6 6 2.2597 -1.0938 -0.0004 7 6 1.7989 -2.5285 -0.0013 8 6 1.6442 -3.0056 -1.4224 9 1 1.8586 -2.3368 -2.2428 10 6 1.2300 -4.2961 -1.6752 11 7 0.9694 -5.1107 -0.6762 12 14 1.0391 -4.8876 -3.4368 13 1 2.3215 -5.4721 -3.9045 14 1 -0.0272 -5.9193 -3.4997 15 1 0.6710 -3.7417 -4.3066 16 6 4.7979 -1.4975 -0.0081 17 6 5.9632 -0.5920 -0.4266 18 6 5.9573 0.6832 0.4210 19 6 4.7821 1.5760 0.0036 20 1 -0.3633 -0.0003 -1.0276 21 1 -0.3634 -0.8898 0.5142 22 1 -0.3633 0.8902 0.5136 23 1 2.5354 -3.1471 0.5115 24 1 0.8408 -2.6028 0.5131 25 1 0.6777 -6.0186 -0.8540 26 1 4.9817 -1.8958 0.9897 27 1 4.6958 -2.3174 -0.7190 28 1 6.9046 -1.1210 -0.2786 29 1 5.8577 -0.3283 -1.4789 30 1 6.8929 1.2227 0.2726 31 1 5.8556 0.4185 1.4734 32 1 4.9599 1.9749 -0.9950 33 1 4.6733 2.3962 0.7132 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260577103.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:36 Heat of formation + Delta-G solvation = 29.022131 kcal Electronic energy + Delta-G solvation = -15011.351907 eV Core-core repulsion = 12650.694292 eV Total energy + Delta-G solvation = -2360.657615 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.29311 -37.50260 -35.60779 -33.68999 -32.79305 -30.86338 -28.39869 -27.79029 -25.16668 -23.92593 -22.52911 -20.27447 -19.63094 -18.59706 -17.12345 -16.53223 -16.32566 -15.62613 -15.42095 -14.66562 -14.47065 -14.36771 -13.95770 -13.64869 -13.46529 -13.30899 -13.12813 -12.77964 -12.57403 -12.39265 -12.12573 -11.73669 -11.73048 -11.53780 -11.41026 -10.98882 -10.64014 -9.85722 -8.98761 -8.25134 -6.38381 1.09958 1.38465 1.39369 1.50106 1.76376 1.95382 2.38741 3.06484 3.57934 3.98002 4.14578 4.17432 4.23499 4.39172 4.46243 4.61034 4.62580 4.72788 4.77739 4.84018 4.92494 5.10640 5.13861 5.21076 5.26829 5.32544 5.52102 5.56976 5.65397 5.70984 5.99641 6.03134 6.32496 6.69766 6.95250 7.30361 8.83928 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.029681 B = 0.009148 C = 0.007803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.126082 B = 3059.913337 C = 3587.687482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.394 5.394 3 N -0.335 5.335 4 C 0.069 3.931 5 C -0.273 4.273 6 C 0.110 3.890 7 C 0.090 3.910 8 C -0.525 4.525 9 H 0.044 0.956 10 C 0.016 3.984 11 N -0.922 5.922 12 Si 0.962 3.038 13 H -0.271 1.271 14 H -0.276 1.276 15 H -0.272 1.272 16 C -0.034 4.034 17 C -0.110 4.110 18 C -0.106 4.106 19 C -0.032 4.032 20 H 0.070 0.930 21 H 0.084 0.916 22 H 0.102 0.898 23 H 0.024 0.976 24 H 0.013 0.987 25 H 0.268 0.732 26 H 0.060 0.940 27 H 0.047 0.953 28 H 0.085 0.915 29 H 0.056 0.944 30 H 0.101 0.899 31 H 0.062 0.938 32 H 0.089 0.911 33 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.768 9.396 1.189 11.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.177 5.177 3 N -0.157 5.157 4 C -0.099 4.099 5 C -0.284 4.284 6 C -0.016 4.016 7 C 0.052 3.948 8 C -0.564 4.564 9 H 0.063 0.937 10 C -0.183 4.183 11 N -0.561 5.561 12 Si 0.786 3.214 13 H -0.196 1.196 14 H -0.201 1.201 15 H -0.196 1.196 16 C -0.073 4.073 17 C -0.147 4.147 18 C -0.143 4.143 19 C -0.071 4.071 20 H 0.088 0.912 21 H 0.102 0.898 22 H 0.121 0.879 23 H 0.042 0.958 24 H 0.031 0.969 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.066 0.934 28 H 0.103 0.897 29 H 0.075 0.925 30 H 0.120 0.880 31 H 0.080 0.920 32 H 0.108 0.892 33 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 5.730 10.236 1.240 11.796 hybrid contribution -0.301 -1.456 -0.756 1.668 sum 5.428 8.780 0.483 10.334 Atomic orbital electron populations 1.21838 0.73614 1.04458 1.03437 1.48596 1.07052 1.02834 1.59210 1.76739 1.01957 1.08847 1.28107 1.22892 0.94102 0.94050 0.98831 1.20051 0.94583 0.94270 1.19467 1.21420 0.91519 0.91417 0.97285 1.17666 0.95704 0.84295 0.97158 1.21066 1.46233 0.97467 0.91585 0.93741 1.25759 0.94518 0.96506 1.01522 1.70037 1.46077 1.07154 1.32837 0.85495 0.78313 0.78079 0.79477 1.19623 1.20104 1.19639 1.19913 0.90746 0.96240 1.00392 1.21553 0.97280 0.96162 0.99729 1.21551 0.97697 0.95346 0.99750 1.20251 0.87336 0.96223 1.03262 0.91164 0.89772 0.87947 0.95810 0.96871 0.92271 0.92159 0.93439 0.89663 0.92506 0.88015 0.91969 0.89232 0.89117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 3.79 11.28 127.77 1.44 5.23 16 2 N -0.39 -17.24 4.02 -356.44 -1.43 -18.68 16 3 N -0.34 -14.08 12.56 -47.14 -0.59 -14.67 16 4 C 0.07 2.65 7.10 43.44 0.31 2.96 16 5 C -0.27 -11.67 5.88 -20.10 -0.12 -11.79 16 6 C 0.11 5.22 6.11 41.20 0.25 5.47 16 7 C 0.09 4.79 5.06 29.10 0.15 4.94 16 8 C -0.53 -29.57 9.09 25.60 0.23 -29.34 16 9 H 0.04 2.56 7.74 -2.91 -0.02 2.54 16 10 C 0.02 0.91 5.46 84.65 0.46 1.37 16 11 N -0.92 -53.41 13.29 21.45 0.28 -53.13 16 12 Si 0.96 43.51 29.54 68.60 2.03 45.54 16 13 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 14 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 15 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 16 C -0.03 -1.27 5.97 30.04 0.18 -1.09 16 17 C -0.11 -2.95 5.87 30.77 0.18 -2.76 16 18 C -0.11 -2.38 5.87 30.76 0.18 -2.20 16 19 C -0.03 -0.85 6.31 30.05 0.19 -0.66 16 20 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 21 H 0.08 2.97 7.06 -2.39 -0.02 2.96 16 22 H 0.10 2.95 8.14 -2.39 -0.02 2.93 16 23 H 0.02 1.33 8.01 -2.39 -0.02 1.31 16 24 H 0.01 0.72 7.09 -2.39 -0.02 0.70 16 25 H 0.27 14.56 8.31 -92.71 -0.77 13.79 16 26 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 27 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.08 1.85 8.14 -2.39 -0.02 1.84 16 29 H 0.06 1.57 8.10 -2.39 -0.02 1.55 16 30 H 0.10 1.59 8.14 -2.38 -0.02 1.57 16 31 H 0.06 1.45 8.10 -2.39 -0.02 1.43 16 32 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 33 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 Total: -1.00 -66.22 274.28 4.82 -61.40 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: 1.08 Total: 7.40 kcal Atomic # 6 Polarization: -31.32 SS G_CDS: 3.45 Total: -27.86 kcal Atomic # 7 Polarization: -84.74 SS G_CDS: -1.74 Total: -86.48 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -66.22 4.82 -61.40 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260577103.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.421 kcal (2) G-P(sol) polarization free energy of solvation -66.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds