Wall clock time and date at job start Mon Mar 30 2020 02:46:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 N 1.46497 * 109.47188 * 239.99790 * 2 1 3 5 5 C 1.39166 * 120.00515 * 205.00067 * 4 2 1 6 6 C 1.39497 * 120.86360 * 359.97438 * 5 4 2 7 7 C 1.37875 * 119.07106 * 180.02562 * 6 5 4 8 8 N 1.32014 * 120.83966 * 0.02609 * 7 6 5 9 9 C 1.31984 * 121.91341 * 359.97284 * 8 7 6 10 10 C 1.50692 * 119.57807 * 180.02562 * 9 8 7 11 11 C 1.50708 * 109.47401 * 305.00394 * 10 9 8 12 12 H 1.07997 * 119.99377 * 359.97438 * 11 10 9 13 13 C 1.37876 * 119.99940 * 180.02562 * 11 10 9 14 14 N 1.31512 * 120.00356 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 119.99615 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47425 * 359.97438 * 15 13 11 17 17 H 1.48489 * 109.47104 * 119.99793 * 15 13 11 18 18 H 1.48504 * 109.46788 * 239.99725 * 15 13 11 19 19 C 1.37921 * 120.83886 * 359.72200 * 9 8 7 20 20 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 21 21 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 22 22 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 24 24 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 25 25 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 26 26 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 27 27 H 0.97004 * 119.99924 * 25.00373 * 4 2 1 28 28 H 1.08004 * 120.46776 * 0.02709 * 6 5 4 29 29 H 1.07997 * 119.58206 * 180.02562 * 7 6 5 30 30 H 1.08992 * 109.47505 * 65.00312 * 10 9 8 31 31 H 1.09005 * 109.47101 * 185.00582 * 10 9 8 32 32 H 0.97000 * 120.00177 * 180.02562 * 14 13 11 33 33 H 1.07991 * 120.46176 * 180.28413 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 3.2801 -1.2777 -1.1943 6 6 4.0951 -1.2190 -0.0638 7 6 5.3387 -1.8130 -0.1029 8 7 5.7601 -2.4300 -1.1912 9 6 5.0191 -2.5072 -2.2806 10 6 5.5522 -3.2252 -3.4935 11 6 6.8831 -2.6346 -3.8823 12 1 7.3008 -1.8205 -3.3087 13 6 7.5668 -3.1330 -4.9710 14 7 7.0580 -4.1240 -5.6698 15 14 9.2168 -2.4013 -5.4524 16 1 9.5660 -1.3062 -4.5123 17 1 10.2613 -3.4553 -5.3951 18 1 9.1345 -1.8605 -6.8330 19 6 3.7605 -1.9445 -2.3210 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 1.8933 -0.5139 0.8900 24 1 1.6767 1.9563 -0.8900 25 1 1.6768 1.9562 0.8900 26 1 3.1300 1.4424 0.0005 27 1 1.4622 -0.7387 -1.9894 28 1 3.7567 -0.7154 0.8297 29 1 5.9763 -1.7728 0.7679 30 1 5.6776 -4.2832 -3.2636 31 1 4.8499 -3.1136 -4.3197 32 1 7.5392 -4.4749 -6.4354 33 1 3.1576 -2.0153 -3.2141 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260577197.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:26 Heat of formation + Delta-G solvation = 19.593274 kcal Electronic energy + Delta-G solvation = -14299.481702 eV Core-core repulsion = 11938.415221 eV Total energy + Delta-G solvation = -2361.066481 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.60417 -37.09074 -33.34488 -32.58274 -31.15315 -28.69431 -27.53932 -27.22616 -23.59844 -22.62829 -21.53146 -19.92864 -16.96333 -16.41894 -15.94960 -15.11606 -14.72560 -14.49273 -14.28068 -13.66454 -13.35682 -13.04524 -12.47920 -12.42894 -12.24559 -11.89878 -11.70323 -11.28312 -11.23884 -10.91223 -10.67454 -10.50647 -10.26842 -9.66722 -9.29241 -8.45847 -8.31116 -8.02134 -7.43129 -5.93800 -3.93220 1.98908 2.26421 3.38196 3.44990 3.48327 3.52163 4.52026 4.66735 4.73398 4.91099 5.02796 5.24655 5.36753 5.42068 5.45654 5.52754 5.58807 5.67152 5.73819 5.86347 5.98350 6.12963 6.20318 6.56321 6.60216 6.65005 7.31887 7.56171 7.66790 7.68690 7.87931 8.04142 8.42527 9.09561 9.15016 9.68480 11.17784 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.048204 B = 0.005724 C = 0.005609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.719290 B = 4890.195279 C = 4990.397739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.144 3.856 3 C -0.169 4.169 4 N -0.741 5.741 5 C 0.245 3.755 6 C -0.281 4.281 7 C 0.132 3.868 8 N -0.510 5.510 9 C 0.208 3.792 10 C 0.058 3.942 11 C -0.493 4.493 12 H 0.060 0.940 13 C 0.054 3.946 14 N -0.900 5.900 15 Si 0.896 3.104 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.286 1.286 19 C -0.258 4.258 20 H 0.059 0.941 21 H 0.068 0.932 22 H 0.061 0.939 23 H 0.078 0.922 24 H 0.056 0.944 25 H 0.060 0.940 26 H 0.061 0.939 27 H 0.397 0.603 28 H 0.118 0.882 29 H 0.141 0.859 30 H 0.041 0.959 31 H 0.034 0.966 32 H 0.260 0.740 33 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.389 8.396 10.980 18.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.038 3.962 3 C -0.228 4.228 4 N -0.372 5.372 5 C 0.135 3.865 6 C -0.306 4.306 7 C -0.026 4.026 8 N -0.222 5.222 9 C 0.073 3.927 10 C 0.020 3.980 11 C -0.532 4.532 12 H 0.079 0.921 13 C -0.147 4.147 14 N -0.540 5.540 15 Si 0.724 3.276 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.212 1.212 19 C -0.283 4.283 20 H 0.078 0.922 21 H 0.087 0.913 22 H 0.080 0.920 23 H 0.096 0.904 24 H 0.075 0.925 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.232 0.768 28 H 0.136 0.864 29 H 0.159 0.841 30 H 0.059 0.941 31 H 0.052 0.948 32 H 0.069 0.931 33 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -11.572 7.986 11.000 17.852 hybrid contribution -0.217 0.836 -0.599 1.051 sum -11.789 8.821 10.402 18.028 Atomic orbital electron populations 1.22054 0.94607 1.02506 1.02564 1.20838 0.93774 0.92560 0.88996 1.22303 1.02273 0.96471 1.01762 1.44607 1.15844 1.60900 1.15830 1.17999 0.84940 0.89836 0.93750 1.21386 0.98105 1.12493 0.98621 1.22489 0.92457 0.91559 0.96104 1.67731 1.35787 1.19105 0.99616 1.21968 0.87474 0.89344 0.93904 1.18332 0.96657 0.95525 0.87445 1.21052 1.03042 1.17695 1.11406 0.92130 1.24989 0.98037 0.95197 0.96435 1.69962 1.38780 1.26069 1.19229 0.86457 0.83922 0.79118 0.78073 1.19727 1.21003 1.21185 1.21519 0.99799 1.08500 0.98490 0.92206 0.91265 0.92026 0.90401 0.92487 0.92126 0.91986 0.76800 0.86386 0.84145 0.94070 0.94822 0.93074 0.85877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.21 9.38 37.16 0.35 -0.87 16 2 C 0.14 1.44 2.89 -67.94 -0.20 1.24 16 3 C -0.17 -1.63 9.47 37.15 0.35 -1.27 16 4 N -0.74 -9.43 5.24 -52.01 -0.27 -9.70 16 5 C 0.24 4.09 6.68 -83.61 -0.56 3.53 16 6 C -0.28 -4.57 8.95 -39.25 -0.35 -4.92 16 7 C 0.13 2.45 11.17 -17.61 -0.20 2.25 16 8 N -0.51 -11.79 9.96 -9.57 -0.10 -11.88 16 9 C 0.21 4.91 6.12 -82.65 -0.51 4.41 16 10 C 0.06 1.56 5.37 -29.03 -0.16 1.40 16 11 C -0.49 -14.53 8.91 -34.44 -0.31 -14.83 16 12 H 0.06 1.81 7.68 -52.49 -0.40 1.41 16 13 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 14 N -0.90 -27.30 13.29 55.43 0.74 -26.56 16 15 Si 0.90 22.44 29.54 -169.99 -5.02 17.42 16 16 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 17 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 18 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 19 C -0.26 -5.12 9.60 -39.24 -0.38 -5.49 16 20 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 21 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 22 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.08 0.80 6.54 -51.93 -0.34 0.46 16 24 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 25 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.06 0.70 7.82 -51.93 -0.41 0.30 16 27 H 0.40 4.55 8.63 -40.82 -0.35 4.19 16 28 H 0.12 1.57 6.36 -52.48 -0.33 1.24 16 29 H 0.14 2.14 8.06 -52.49 -0.42 1.71 16 30 H 0.04 1.19 8.14 -51.93 -0.42 0.76 16 31 H 0.03 0.92 7.87 -51.93 -0.41 0.51 16 32 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 33 H 0.12 2.26 7.94 -52.49 -0.42 1.85 16 LS Contribution 281.42 15.07 4.24 4.24 Total: -1.00 -32.21 281.42 -7.21 -39.42 By element: Atomic # 1 Polarization: 4.91 SS G_CDS: -4.76 Total: 0.15 kcal Atomic # 6 Polarization: -11.04 SS G_CDS: -2.04 Total: -13.08 kcal Atomic # 7 Polarization: -48.52 SS G_CDS: 0.37 Total: -48.15 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -32.21 -7.21 -39.42 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260577197.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.012 kcal (2) G-P(sol) polarization free energy of solvation -32.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds