Wall clock time and date at job start Mon Mar 30 2020 02:54:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.43841 * 2 1 4 4 C 1.53114 * 109.43182 * 240.09326 * 2 1 3 5 5 C 1.53495 * 109.31010 * 170.01269 * 4 2 1 6 6 C 1.50716 * 108.05345 * 48.70908 * 5 4 2 7 7 C 1.33865 * 128.67762 * 164.28223 * 6 5 4 8 8 N 1.34426 * 107.79636 * 180.02562 * 7 6 5 9 9 C 1.30786 * 109.32173 * 0.02562 * 8 7 6 10 10 C 1.50699 * 125.72344 * 179.97438 * 9 8 7 11 11 C 1.50706 * 109.46817 * 90.02316 * 10 9 8 12 12 H 1.07995 * 120.00167 * 359.72198 * 11 10 9 13 13 C 1.37879 * 119.99394 * 179.97438 * 11 10 9 14 14 N 1.31514 * 120.00338 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99424 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47474 * 90.00322 * 15 13 11 17 17 H 1.48507 * 109.46754 * 210.00056 * 15 13 11 18 18 H 1.48498 * 109.47278 * 329.99887 * 15 13 11 19 19 N 1.34407 * 108.55094 * 0.18904 * 9 8 7 20 20 C 1.46482 * 128.44052 * 180.63660 * 19 9 8 21 21 H 1.09000 * 109.46961 * 179.90952 * 1 2 3 22 22 H 1.09004 * 109.46887 * 299.90280 * 1 2 3 23 23 H 1.08997 * 109.47219 * 59.90217 * 1 2 3 24 24 H 1.09000 * 109.49693 * 50.06821 * 4 2 1 25 25 H 1.08996 * 109.50119 * 289.96973 * 4 2 1 26 26 H 1.08997 * 109.74954 * 289.06956 * 5 4 2 27 27 H 1.09005 * 109.74299 * 168.34532 * 5 4 2 28 28 H 1.07997 * 126.10325 * 0.04954 * 7 6 5 29 29 H 1.09000 * 109.47247 * 330.02379 * 10 9 8 30 30 H 1.09001 * 109.47358 * 210.01805 * 10 9 8 31 31 H 0.96996 * 119.99730 * 179.97438 * 14 13 11 32 32 H 1.08998 * 109.75630 * 42.29614 * 20 19 9 33 33 H 1.09000 * 109.50688 * 281.94301 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8927 1.0278 0.0000 4 6 2.0394 -0.7199 -1.2516 5 6 3.5536 -0.5042 -1.3804 6 6 4.1840 -0.8090 -0.0458 7 6 5.4726 -1.0337 0.2390 8 7 5.5675 -1.2629 1.5601 9 6 4.3782 -1.1871 2.0990 10 6 4.0596 -1.3826 3.5589 11 6 4.1445 -0.0583 4.2732 12 1 4.4078 0.8347 3.7257 13 6 3.8913 0.0123 5.6267 14 7 3.5762 -1.0760 6.2944 15 14 3.9960 1.6539 6.5119 16 1 2.6683 2.3186 6.4811 17 1 4.4051 1.4307 7.9220 18 1 4.9977 2.5175 5.8367 19 7 3.4872 -0.9104 1.1315 20 6 2.0400 -0.7196 1.2537 21 1 -0.3633 -1.0277 -0.0016 22 1 -0.3633 0.5123 0.8909 23 1 -0.3633 0.5153 -0.8891 24 1 1.5384 -0.3174 -2.1321 25 1 1.8295 -1.7863 -1.1688 26 1 3.7561 0.5309 -1.6554 27 1 3.9576 -1.1735 -2.1400 28 1 6.2901 -1.0310 -0.4667 29 1 4.7752 -2.0783 3.9970 30 1 3.0520 -1.7859 3.6601 31 1 3.3984 -1.0263 7.2467 32 1 1.8209 -0.1171 2.1351 33 1 1.5512 -1.6898 1.3433 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260595407.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:33 Heat of formation + Delta-G solvation = 33.120760 kcal Electronic energy + Delta-G solvation = -14989.275508 eV Core-core repulsion = 12628.795622 eV Total energy + Delta-G solvation = -2360.479885 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.57317 -36.98883 -33.49082 -32.35698 -31.50391 -29.55188 -26.64907 -25.94279 -23.72558 -22.45966 -21.10709 -19.48332 -18.45941 -16.47689 -15.94112 -15.28359 -14.53813 -14.32565 -14.24291 -13.59599 -13.52158 -12.69245 -12.46737 -12.31870 -12.21986 -11.97563 -11.40873 -11.35937 -10.90206 -10.78413 -10.72930 -10.65986 -10.54904 -9.88966 -9.46153 -9.00866 -8.73146 -8.47080 -7.34924 -6.08141 -4.12056 2.83548 3.28365 3.35434 3.41066 3.54089 4.03193 4.43833 4.61699 4.69167 4.83734 5.13620 5.26390 5.40292 5.46259 5.54175 5.62138 5.65769 5.73553 5.79157 5.88638 5.92413 6.07504 6.09961 6.22298 6.31048 6.43107 7.15685 7.31434 7.46729 7.64600 7.87048 8.04378 8.29355 8.90569 9.08470 9.51634 11.01504 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.030094 B = 0.008673 C = 0.007488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.203411 B = 3227.544250 C = 3738.372898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.104 4.104 3 H 0.078 0.922 4 C -0.117 4.117 5 C -0.037 4.037 6 C -0.065 4.065 7 C -0.029 4.029 8 N -0.513 5.513 9 C 0.267 3.733 10 C 0.095 3.905 11 C -0.510 4.510 12 H 0.056 0.944 13 C 0.061 3.939 14 N -0.893 5.893 15 Si 0.898 3.102 16 H -0.280 1.280 17 H -0.284 1.284 18 H -0.273 1.273 19 N -0.455 5.455 20 C 0.112 3.888 21 H 0.057 0.943 22 H 0.061 0.939 23 H 0.059 0.941 24 H 0.069 0.931 25 H 0.064 0.936 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.156 0.844 29 H 0.051 0.949 30 H 0.032 0.968 31 H 0.263 0.737 32 H 0.098 0.902 33 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.520 1.441 -13.639 15.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.123 4.123 3 H 0.097 0.903 4 C -0.155 4.155 5 C -0.075 4.075 6 C -0.179 4.179 7 C -0.177 4.177 8 N -0.231 5.231 9 C 0.005 3.995 10 C 0.056 3.944 11 C -0.550 4.550 12 H 0.074 0.926 13 C -0.141 4.141 14 N -0.531 5.531 15 Si 0.725 3.275 16 H -0.207 1.207 17 H -0.210 1.210 18 H -0.198 1.198 19 N -0.137 5.137 20 C -0.011 4.011 21 H 0.076 0.924 22 H 0.080 0.920 23 H 0.078 0.922 24 H 0.088 0.912 25 H 0.083 0.917 26 H 0.090 0.910 27 H 0.096 0.904 28 H 0.173 0.827 29 H 0.069 0.931 30 H 0.050 0.950 31 H 0.073 0.927 32 H 0.116 0.884 33 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.979 1.201 -13.010 14.368 hybrid contribution -0.621 1.067 0.125 1.241 sum -6.600 2.268 -12.885 14.654 Atomic orbital electron populations 1.21759 0.93882 1.02217 1.02244 1.21437 0.96343 1.00330 0.94196 0.90338 1.21704 0.95565 1.00823 0.97359 1.20051 0.94037 1.01484 0.91924 1.20821 0.93283 1.15077 0.88699 1.21704 0.94204 1.08043 0.93715 1.70549 1.22411 1.23395 1.06744 1.24362 0.83136 0.97920 0.94107 1.17832 0.97826 0.98711 0.80017 1.20937 1.47529 0.93200 0.93295 0.92561 1.24962 0.95045 0.96807 0.97284 1.69944 1.47018 1.27455 1.08725 0.86493 0.78340 0.83707 0.78935 1.20655 1.20984 1.19760 1.45271 1.07806 1.53295 1.07372 1.21900 0.78189 1.01418 0.99567 0.92358 0.92010 0.92193 0.91217 0.91681 0.91005 0.90431 0.82662 0.93092 0.94960 0.92687 0.88376 0.90626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 9.16 37.16 0.34 -1.09 16 2 C -0.10 -1.32 2.71 -90.41 -0.25 -1.56 16 3 H 0.08 1.05 8.11 -51.93 -0.42 0.63 16 4 C -0.12 -1.34 5.25 -26.42 -0.14 -1.48 16 5 C -0.04 -0.48 6.31 -27.62 -0.17 -0.65 16 6 C -0.07 -1.20 6.57 -81.73 -0.54 -1.74 16 7 C -0.03 -0.58 11.84 -17.95 -0.21 -0.79 16 8 N -0.51 -12.61 11.27 -11.02 -0.12 -12.73 16 9 C 0.27 6.51 7.13 -155.75 -1.11 5.40 16 10 C 0.09 2.53 5.33 -29.03 -0.15 2.38 16 11 C -0.51 -14.54 9.09 -34.44 -0.31 -14.86 16 12 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 13 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 14 N -0.89 -26.11 13.29 55.43 0.74 -25.37 16 15 Si 0.90 21.64 29.54 -169.99 -5.02 16.62 16 16 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 17 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 18 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 19 N -0.45 -9.22 3.13 -109.42 -0.34 -9.56 16 20 C 0.11 1.85 5.90 -3.90 -0.02 1.83 16 21 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 22 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 24 H 0.07 0.64 8.11 -51.93 -0.42 0.21 16 25 H 0.06 0.77 8.12 -51.93 -0.42 0.34 16 26 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 27 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.16 2.62 8.06 -52.49 -0.42 2.20 16 29 H 0.05 1.47 8.14 -51.93 -0.42 1.04 16 30 H 0.03 0.86 7.96 -51.93 -0.41 0.44 16 31 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 32 H 0.10 1.75 8.14 -51.93 -0.42 1.33 16 33 H 0.08 1.16 8.13 -51.93 -0.42 0.74 16 LS Contribution 274.84 15.07 4.14 4.14 Total: -1.00 -31.87 274.84 -8.30 -40.17 By element: Atomic # 1 Polarization: 2.70 SS G_CDS: -5.02 Total: -2.33 kcal Atomic # 6 Polarization: -8.27 SS G_CDS: -2.67 Total: -10.94 kcal Atomic # 7 Polarization: -47.93 SS G_CDS: 0.27 Total: -47.66 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -31.87 -8.30 -40.17 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260595407.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.290 kcal (2) G-P(sol) polarization free energy of solvation -31.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds