Wall clock time and date at job start Mon Mar 30 2020 02:54:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.43841 * 2 1 4 4 C 1.53114 * 109.43182 * 240.09326 * 2 1 3 5 5 C 1.53495 * 109.31010 * 170.01269 * 4 2 1 6 6 C 1.50716 * 108.05345 * 48.70908 * 5 4 2 7 7 C 1.33865 * 128.67762 * 164.28223 * 6 5 4 8 8 N 1.34426 * 107.79636 * 180.02562 * 7 6 5 9 9 C 1.30786 * 109.32173 * 0.02562 * 8 7 6 10 10 C 1.50699 * 125.72344 * 179.97438 * 9 8 7 11 11 C 1.50706 * 109.46817 * 90.02316 * 10 9 8 12 12 H 1.07995 * 120.00167 * 359.72198 * 11 10 9 13 13 C 1.37879 * 119.99394 * 179.97438 * 11 10 9 14 14 N 1.31514 * 120.00338 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99424 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47474 * 90.00322 * 15 13 11 17 17 H 1.48507 * 109.46754 * 210.00056 * 15 13 11 18 18 H 1.48498 * 109.47278 * 329.99887 * 15 13 11 19 19 N 1.34407 * 108.55094 * 0.18904 * 9 8 7 20 20 C 1.46482 * 128.44052 * 180.63660 * 19 9 8 21 21 H 1.09000 * 109.46961 * 179.90952 * 1 2 3 22 22 H 1.09004 * 109.46887 * 299.90280 * 1 2 3 23 23 H 1.08997 * 109.47219 * 59.90217 * 1 2 3 24 24 H 1.09000 * 109.49693 * 50.06821 * 4 2 1 25 25 H 1.08996 * 109.50119 * 289.96973 * 4 2 1 26 26 H 1.08997 * 109.74954 * 289.06956 * 5 4 2 27 27 H 1.09005 * 109.74299 * 168.34532 * 5 4 2 28 28 H 1.07997 * 126.10325 * 0.04954 * 7 6 5 29 29 H 1.09000 * 109.47247 * 330.02379 * 10 9 8 30 30 H 1.09001 * 109.47358 * 210.01805 * 10 9 8 31 31 H 0.96996 * 119.99730 * 179.97438 * 14 13 11 32 32 H 1.08998 * 109.75630 * 42.29614 * 20 19 9 33 33 H 1.09000 * 109.50688 * 281.94301 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8927 1.0278 0.0000 4 6 2.0394 -0.7199 -1.2516 5 6 3.5536 -0.5042 -1.3804 6 6 4.1840 -0.8090 -0.0458 7 6 5.4726 -1.0337 0.2390 8 7 5.5675 -1.2629 1.5601 9 6 4.3782 -1.1871 2.0990 10 6 4.0596 -1.3826 3.5589 11 6 4.1445 -0.0583 4.2732 12 1 4.4078 0.8347 3.7257 13 6 3.8913 0.0123 5.6267 14 7 3.5762 -1.0760 6.2944 15 14 3.9960 1.6539 6.5119 16 1 2.6683 2.3186 6.4811 17 1 4.4051 1.4307 7.9220 18 1 4.9977 2.5175 5.8367 19 7 3.4872 -0.9104 1.1315 20 6 2.0400 -0.7196 1.2537 21 1 -0.3633 -1.0277 -0.0016 22 1 -0.3633 0.5123 0.8909 23 1 -0.3633 0.5153 -0.8891 24 1 1.5384 -0.3174 -2.1321 25 1 1.8295 -1.7863 -1.1688 26 1 3.7561 0.5309 -1.6554 27 1 3.9576 -1.1735 -2.1400 28 1 6.2901 -1.0310 -0.4667 29 1 4.7752 -2.0783 3.9970 30 1 3.0520 -1.7859 3.6601 31 1 3.3984 -1.0263 7.2467 32 1 1.8209 -0.1171 2.1351 33 1 1.5512 -1.6898 1.3433 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260595407.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:33 Heat of formation + Delta-G solvation = 14.128747 kcal Electronic energy + Delta-G solvation = -14990.099063 eV Core-core repulsion = 12628.795622 eV Total energy + Delta-G solvation = -2361.303441 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.15811 -38.16097 -35.54564 -33.89298 -32.85948 -31.35668 -28.19898 -27.26893 -25.50868 -23.88158 -22.39046 -21.05732 -19.82239 -18.64773 -17.56897 -16.67074 -16.48299 -15.61139 -15.32862 -14.99103 -14.71023 -14.31889 -14.10645 -13.91702 -13.46502 -13.31822 -13.20192 -12.72623 -12.64803 -12.44797 -12.04131 -11.89069 -11.68942 -11.59053 -11.53066 -10.71508 -10.65589 -10.36196 -8.98392 -8.25300 -6.40383 1.24271 1.36723 1.39118 1.50704 2.04178 2.26794 2.43092 3.04320 3.52970 3.68142 3.81148 3.90445 4.04105 4.30042 4.39808 4.51876 4.54035 4.60029 4.69045 4.81004 4.93320 4.98519 5.05443 5.12750 5.17434 5.28857 5.32990 5.39863 5.62264 5.69292 5.97971 6.06773 6.46399 6.66389 7.28045 7.38594 8.83095 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.030094 B = 0.008673 C = 0.007488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.203411 B = 3227.544250 C = 3738.372898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.097 4.097 3 H 0.072 0.928 4 C -0.112 4.112 5 C -0.037 4.037 6 C -0.040 4.040 7 C -0.061 4.061 8 N -0.548 5.548 9 C 0.223 3.777 10 C 0.110 3.890 11 C -0.529 4.529 12 H 0.043 0.957 13 C 0.013 3.987 14 N -0.923 5.923 15 Si 0.968 3.032 16 H -0.264 1.264 17 H -0.275 1.275 18 H -0.274 1.274 19 N -0.452 5.452 20 C 0.102 3.898 21 H 0.064 0.936 22 H 0.054 0.946 23 H 0.085 0.915 24 H 0.108 0.892 25 H 0.063 0.937 26 H 0.091 0.909 27 H 0.105 0.895 28 H 0.186 0.814 29 H 0.014 0.986 30 H 0.022 0.978 31 H 0.269 0.731 32 H 0.074 0.926 33 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.847 2.828 -15.912 17.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.116 4.116 3 H 0.090 0.910 4 C -0.149 4.149 5 C -0.075 4.075 6 C -0.155 4.155 7 C -0.208 4.208 8 N -0.268 5.268 9 C -0.040 4.040 10 C 0.071 3.929 11 C -0.568 4.568 12 H 0.062 0.938 13 C -0.186 4.186 14 N -0.562 5.562 15 Si 0.792 3.208 16 H -0.189 1.189 17 H -0.200 1.200 18 H -0.199 1.199 19 N -0.135 5.135 20 C -0.020 4.020 21 H 0.083 0.917 22 H 0.074 0.926 23 H 0.104 0.896 24 H 0.126 0.874 25 H 0.082 0.918 26 H 0.109 0.891 27 H 0.123 0.877 28 H 0.203 0.797 29 H 0.033 0.967 30 H 0.040 0.960 31 H 0.078 0.922 32 H 0.093 0.907 33 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -7.329 2.583 -15.290 17.152 hybrid contribution -0.199 0.595 0.764 0.988 sum -7.528 3.178 -14.527 16.667 Atomic orbital electron populations 1.21741 0.91555 1.03021 1.03225 1.21455 0.98130 0.99359 0.92651 0.90974 1.21734 0.94493 1.00849 0.97871 1.20348 0.94917 1.03269 0.88933 1.21748 0.92704 1.11011 0.90036 1.22291 0.96401 1.09513 0.92581 1.70392 1.23212 1.23863 1.09336 1.23673 0.84510 1.01959 0.93833 1.17399 0.95992 0.97238 0.82234 1.21088 1.48263 0.93368 0.94061 0.93835 1.25842 0.94178 1.00759 0.97840 1.70049 1.47237 1.29631 1.09278 0.85409 0.78905 0.78860 0.77650 1.18893 1.19987 1.19912 1.45441 1.08929 1.51916 1.07175 1.22214 0.76383 1.02104 1.01277 0.91668 0.92640 0.89631 0.87383 0.91779 0.89076 0.87655 0.79726 0.96735 0.96013 0.92156 0.90746 0.89854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 9.16 71.98 0.66 -1.65 16 2 C -0.10 -2.20 2.71 -10.66 -0.03 -2.23 16 3 H 0.07 1.75 8.11 -2.39 -0.02 1.73 16 4 C -0.11 -2.07 5.25 30.80 0.16 -1.91 16 5 C -0.04 -0.80 6.31 30.02 0.19 -0.61 16 6 C -0.04 -1.42 6.57 40.73 0.27 -1.16 16 7 C -0.06 -2.46 11.84 83.30 0.99 -1.47 16 8 N -0.55 -27.91 11.27 -188.78 -2.13 -30.04 16 9 C 0.22 11.36 7.13 138.25 0.99 12.34 16 10 C 0.11 6.28 5.33 29.10 0.16 6.43 16 11 C -0.53 -31.49 9.09 25.60 0.23 -31.26 16 12 H 0.04 2.64 7.74 -2.91 -0.02 2.61 16 13 C 0.01 0.76 5.46 84.66 0.46 1.22 16 14 N -0.92 -55.43 13.29 21.45 0.28 -55.14 16 15 Si 0.97 44.90 29.54 68.60 2.03 46.92 16 16 H -0.26 -11.50 7.11 99.48 0.71 -10.80 16 17 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 18 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 19 N -0.45 -18.51 3.13 -500.10 -1.57 -20.08 16 20 C 0.10 3.36 5.90 86.48 0.51 3.87 16 21 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 22 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 23 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 24 H 0.11 1.29 8.11 -2.39 -0.02 1.27 16 25 H 0.06 1.24 8.12 -2.39 -0.02 1.22 16 26 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.11 1.83 8.14 -2.38 -0.02 1.81 16 28 H 0.19 5.97 8.06 -2.91 -0.02 5.94 16 29 H 0.01 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.02 1.24 7.96 -2.39 -0.02 1.22 16 31 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 32 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 33 H 0.08 2.57 8.13 -2.39 -0.02 2.55 16 Total: -1.00 -72.37 274.84 4.27 -68.10 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: 1.07 Total: 6.66 kcal Atomic # 6 Polarization: -21.00 SS G_CDS: 4.58 Total: -16.42 kcal Atomic # 7 Polarization: -101.85 SS G_CDS: -3.41 Total: -105.26 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.92 kcal Total: -72.37 4.27 -68.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260595407.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.225 kcal (2) G-P(sol) polarization free energy of solvation -72.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds