Wall clock time and date at job start Mon Mar 30 2020 02:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08998 * 109.58518 * 2 1 4 4 C 1.53263 * 109.70123 * 239.65343 * 2 1 3 5 5 C 1.53151 * 109.49948 * 189.76310 * 4 2 1 6 6 C 1.53184 * 109.45123 * 69.25053 * 5 4 2 7 7 C 1.51044 * 108.28659 * 311.55100 * 6 5 4 8 8 N 1.30090 * 127.38867 * 195.34718 * 7 6 5 9 9 C 1.34293 * 109.21008 * 179.97438 * 8 7 6 10 10 C 1.34861 * 108.07295 * 0.02562 * 9 8 7 11 11 C 1.50694 * 126.65328 * 180.02562 * 10 9 8 12 12 C 1.50703 * 109.46891 * 274.13151 * 11 10 9 13 13 H 1.08002 * 120.00256 * 0.02562 * 12 11 10 14 14 C 1.37882 * 120.00032 * 180.02562 * 12 11 10 15 15 N 1.31508 * 120.00125 * 180.02562 * 14 12 11 16 16 Si 1.86798 * 119.99721 * 0.02562 * 14 12 11 17 17 H 1.48501 * 109.47058 * 270.00016 * 16 14 12 18 18 H 1.48500 * 109.47492 * 29.99768 * 16 14 12 19 19 H 1.48502 * 109.46860 * 150.00039 * 16 14 12 20 20 N 1.35421 * 123.98057 * 15.61798 * 7 6 5 21 21 H 1.09003 * 109.47443 * 307.54089 * 1 2 3 22 22 H 1.09004 * 109.47134 * 67.53944 * 1 2 3 23 23 H 1.08999 * 109.47123 * 187.53841 * 1 2 3 24 24 H 1.09002 * 109.46630 * 309.76598 * 4 2 1 25 25 H 1.08998 * 109.46529 * 69.75352 * 4 2 1 26 26 H 1.08997 * 109.51231 * 189.41686 * 5 4 2 27 27 H 1.09002 * 109.50601 * 309.55424 * 5 4 2 28 28 H 1.08998 * 110.19004 * 191.54809 * 6 5 4 29 29 H 1.08999 * 109.16268 * 70.95398 * 6 5 4 30 30 H 1.07999 * 125.96336 * 180.02562 * 9 8 7 31 31 H 1.09000 * 109.46994 * 154.13873 * 11 10 9 32 32 H 1.08995 * 109.47883 * 34.13245 * 11 10 9 33 33 H 0.97001 * 120.00006 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0466 -0.7290 -1.2452 5 6 3.5584 -0.9411 -1.1230 6 6 3.8422 -1.9664 -0.0208 7 6 3.0489 -1.5772 1.2042 8 7 3.2114 -2.0090 2.4206 9 6 2.3077 -1.4222 3.2221 10 6 1.5556 -0.5940 2.4690 11 6 0.4186 0.2722 2.9460 12 6 -0.8573 -0.5299 2.9481 13 1 -0.8458 -1.5636 2.6356 14 6 -2.0393 0.0560 3.3489 15 7 -3.1526 -0.6440 3.3512 16 14 -2.0593 1.8442 3.8887 17 1 -1.8132 1.9226 5.3511 18 1 -0.9976 2.5910 3.1674 19 1 -3.3830 2.4406 3.5768 20 7 2.0209 -0.6958 1.1917 21 1 -0.3634 0.6262 0.8149 22 1 -0.3633 0.3926 -0.9497 23 1 -0.3633 -1.0188 0.1348 24 1 1.5501 -1.6955 -1.3325 25 1 1.8342 -0.1303 -2.1309 26 1 3.9528 -1.3054 -2.0715 27 1 4.0389 0.0032 -0.8668 28 1 4.9056 -1.9775 0.2180 29 1 3.5310 -2.9538 -0.3619 30 1 2.2017 -1.5852 4.2845 31 1 0.3089 1.1275 2.2793 32 1 0.6284 0.6236 3.9562 33 1 -3.9842 -0.2317 3.6329 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260616235.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:37 Heat of formation + Delta-G solvation = 23.372095 kcal Electronic energy + Delta-G solvation = -15336.671535 eV Core-core repulsion = 12975.768916 eV Total energy + Delta-G solvation = -2360.902619 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.21941 -37.82554 -35.91015 -34.41872 -32.18080 -31.41594 -29.29734 -27.17405 -24.47822 -23.69516 -22.89116 -21.17473 -19.68988 -19.00772 -17.53818 -16.62098 -16.21265 -15.60041 -15.40661 -15.16220 -14.85920 -14.37038 -14.17639 -13.96945 -13.64994 -13.25235 -12.98267 -12.65950 -12.40892 -12.35491 -12.04495 -11.89285 -11.82588 -11.61298 -11.51493 -10.83848 -10.71751 -10.32508 -8.94321 -8.29215 -6.34018 1.27153 1.36490 1.37479 1.47836 2.01658 2.24577 2.33578 3.04626 3.48454 3.65302 3.76971 3.78786 4.13789 4.22178 4.38811 4.49302 4.58221 4.67081 4.75498 4.81370 4.89128 4.92195 4.98566 5.00816 5.11596 5.24627 5.33192 5.47575 5.52458 5.70822 5.93370 6.24608 6.51162 6.69685 7.24539 7.28339 8.87251 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.038052 B = 0.009421 C = 0.008455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.664781 B = 2971.332116 C = 3310.888542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.125 3.875 3 H 0.099 0.901 4 C -0.124 4.124 5 C -0.114 4.114 6 C -0.029 4.029 7 C 0.179 3.821 8 N -0.525 5.525 9 C -0.079 4.079 10 C 0.019 3.981 11 C 0.061 3.939 12 C -0.502 4.502 13 H 0.020 0.980 14 C 0.015 3.985 15 N -0.946 5.946 16 Si 0.943 3.057 17 H -0.268 1.268 18 H -0.242 1.242 19 H -0.282 1.282 20 N -0.450 5.450 21 H 0.063 0.937 22 H 0.096 0.904 23 H 0.032 0.968 24 H 0.063 0.937 25 H 0.120 0.880 26 H 0.115 0.885 27 H 0.072 0.928 28 H 0.104 0.896 29 H 0.090 0.910 30 H 0.160 0.840 31 H 0.040 0.960 32 H 0.038 0.962 33 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.771 4.681 -11.643 17.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.023 3.977 3 H 0.117 0.883 4 C -0.161 4.161 5 C -0.152 4.152 6 C -0.067 4.067 7 C -0.083 4.083 8 N -0.244 5.244 9 C -0.225 4.225 10 C -0.098 4.098 11 C 0.023 3.977 12 C -0.540 4.540 13 H 0.038 0.962 14 C -0.183 4.183 15 N -0.586 5.586 16 Si 0.766 3.234 17 H -0.193 1.193 18 H -0.166 1.166 19 H -0.208 1.208 20 N -0.134 5.134 21 H 0.082 0.918 22 H 0.115 0.885 23 H 0.051 0.949 24 H 0.082 0.918 25 H 0.138 0.862 26 H 0.134 0.866 27 H 0.091 0.909 28 H 0.122 0.878 29 H 0.108 0.892 30 H 0.178 0.822 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 12.116 4.199 -11.480 17.211 hybrid contribution -1.445 0.731 0.813 1.812 sum 10.670 4.930 -10.667 15.873 Atomic orbital electron populations 1.22233 0.93311 1.02280 1.03795 1.21867 0.95450 0.96986 0.83387 0.88300 1.22012 0.96848 1.01408 0.95875 1.21645 0.94914 0.99253 0.99378 1.20328 0.98836 1.00461 0.87118 1.24052 0.93265 0.94664 0.96351 1.69870 1.26116 1.26878 1.01557 1.22088 0.98497 1.01756 1.00135 1.21428 0.99688 1.04006 0.84632 1.18186 0.89178 0.93722 0.96626 1.20852 0.91676 0.97264 1.44232 0.96158 1.25844 0.94697 1.02759 0.94974 1.70048 1.00090 1.39075 1.49424 0.85768 0.78309 0.79635 0.79655 1.19349 1.16562 1.20764 1.45545 1.26090 1.34191 1.07613 0.91814 0.88548 0.94922 0.91809 0.86225 0.86646 0.90915 0.87809 0.89187 0.82233 0.94232 0.94344 0.92366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.48 8.06 71.98 0.58 -4.90 16 2 C 0.12 3.68 3.48 45.08 0.16 3.84 16 3 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 4 C -0.12 -2.52 5.26 30.73 0.16 -2.36 16 5 C -0.11 -1.93 5.94 30.71 0.18 -1.75 16 6 C -0.03 -0.68 6.33 30.02 0.19 -0.49 16 7 C 0.18 6.59 7.65 138.24 1.06 7.65 16 8 N -0.52 -22.83 11.24 -187.50 -2.11 -24.93 16 9 C -0.08 -3.65 11.80 83.54 0.99 -2.67 16 10 C 0.02 0.86 5.89 41.08 0.24 1.10 16 11 C 0.06 2.90 3.60 29.10 0.10 3.01 16 12 C -0.50 -28.46 8.14 25.60 0.21 -28.25 16 13 H 0.02 1.33 7.98 -2.91 -0.02 1.30 16 14 C 0.01 0.83 5.47 84.66 0.46 1.30 16 15 N -0.95 -58.24 13.96 21.45 0.30 -57.95 16 16 Si 0.94 42.44 27.47 68.60 1.88 44.33 16 17 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 18 H -0.24 -9.89 6.54 99.48 0.65 -9.24 16 19 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 20 N -0.45 -17.28 2.98 -477.16 -1.42 -18.71 16 21 H 0.06 2.59 4.49 -2.39 -0.01 2.58 16 22 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16 23 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 24 H 0.06 1.47 8.10 -2.39 -0.02 1.45 16 25 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 26 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.07 1.20 8.12 -2.39 -0.02 1.18 16 28 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 29 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.16 7.06 8.06 -2.91 -0.02 7.04 16 31 H 0.04 1.77 5.26 -2.39 -0.01 1.76 16 32 H 0.04 1.79 7.57 -2.39 -0.02 1.77 16 33 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -71.98 262.91 4.01 -67.96 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: 1.03 Total: 12.82 kcal Atomic # 6 Polarization: -27.86 SS G_CDS: 4.33 Total: -23.52 kcal Atomic # 7 Polarization: -98.35 SS G_CDS: -3.23 Total: -101.59 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 1.88 Total: 44.33 kcal Total: -71.98 4.01 -67.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260616235.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.334 kcal (2) G-P(sol) polarization free energy of solvation -71.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.962 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds