Wall clock time and date at job start Mon Mar 30 2020 02:56:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09005 * 109.57792 * 2 1 4 4 C 1.53263 * 109.58253 * 120.27501 * 2 1 3 5 5 C 1.53155 * 109.48744 * 170.30499 * 4 2 1 6 6 C 1.53392 * 109.23953 * 290.51171 * 5 4 2 7 7 C 1.51043 * 108.21408 * 48.82179 * 6 5 4 8 8 N 1.30090 * 127.39218 * 164.06824 * 7 6 5 9 9 C 1.34284 * 109.21135 * 180.02562 * 8 7 6 10 10 C 1.34852 * 108.07230 * 359.96923 * 9 8 7 11 11 C 1.50703 * 126.65234 * 179.97438 * 10 9 8 12 12 C 1.50696 * 109.47096 * 85.93045 * 11 10 9 13 13 H 1.08004 * 120.00384 * 359.97438 * 12 11 10 14 14 C 1.37882 * 120.00125 * 179.97438 * 12 11 10 15 15 N 1.31509 * 120.00074 * 179.97438 * 14 12 11 16 16 Si 1.86803 * 119.99936 * 0.02562 * 14 12 11 17 17 H 1.48497 * 109.47295 * 269.99810 * 16 14 12 18 18 H 1.48504 * 109.46923 * 30.00048 * 16 14 12 19 19 H 1.48497 * 109.47093 * 149.99477 * 16 14 12 20 20 N 1.35422 * 123.97902 * 344.37421 * 7 6 5 21 21 H 1.09004 * 109.46562 * 291.78188 * 1 2 3 22 22 H 1.08997 * 109.47472 * 51.78164 * 1 2 3 23 23 H 1.08999 * 109.47257 * 171.78667 * 1 2 3 24 24 H 1.08994 * 109.46622 * 50.30825 * 4 2 1 25 25 H 1.08998 * 109.46575 * 290.31005 * 4 2 1 26 26 H 1.09001 * 109.50704 * 170.57720 * 5 4 2 27 27 H 1.09005 * 109.50966 * 50.44520 * 5 4 2 28 28 H 1.08998 * 109.71405 * 289.13785 * 6 5 4 29 29 H 1.09003 * 109.74976 * 168.52272 * 6 5 4 30 30 H 1.08004 * 125.96312 * 179.97438 * 9 8 7 31 31 H 1.08995 * 109.47510 * 325.92748 * 11 10 9 32 32 H 1.08999 * 109.46989 * 205.92803 * 11 10 9 33 33 H 0.97003 * 120.00022 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0437 -0.7280 1.2470 5 6 3.5558 -0.9402 1.1282 6 6 3.8366 -1.9727 0.0291 7 6 3.0493 -1.5809 -1.1989 8 7 3.2184 -2.0091 -2.4156 9 6 2.3183 -1.4211 -3.2201 10 6 1.5615 -0.5959 -2.4685 11 6 0.4259 0.2705 -2.9490 12 6 -0.8493 -0.5325 -2.9586 13 1 -0.8385 -1.5669 -2.6482 14 6 -2.0299 0.0534 -3.3636 15 7 -3.1426 -0.6475 -3.3724 16 14 -2.0486 1.8423 -3.9012 17 1 -2.3107 2.7100 -2.7249 18 1 -0.7331 2.1950 -4.4932 19 1 -3.1167 2.0440 -4.9129 20 7 2.0275 -0.6922 -1.1912 21 1 -0.3632 0.3814 0.9544 22 1 -0.3634 0.6357 -0.8074 23 1 -0.3634 -1.0171 -0.1468 24 1 1.5471 -1.6943 1.3339 25 1 1.8294 -0.1285 2.1317 26 1 3.9481 -1.3036 2.0781 27 1 4.0369 0.0039 0.8724 28 1 3.5252 -2.9616 0.3655 29 1 4.9013 -1.9821 -0.2042 30 1 2.2179 -1.5811 -4.2835 31 1 0.6402 0.6241 -3.9575 32 1 0.3126 1.1244 -2.2811 33 1 -3.9731 -0.2354 -3.6577 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260616243.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:40 Heat of formation + Delta-G solvation = 42.509815 kcal Electronic energy + Delta-G solvation = -15332.626943 eV Core-core repulsion = 12972.554198 eV Total energy + Delta-G solvation = -2360.072745 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.69567 -36.60732 -34.19471 -32.67695 -30.39130 -29.97301 -27.85287 -25.62192 -22.70962 -22.31909 -21.59623 -19.62239 -18.34597 -16.90284 -16.01256 -15.14934 -14.43227 -14.33163 -14.13826 -13.84288 -13.10716 -12.90581 -12.67950 -12.20008 -12.19406 -11.89504 -11.41015 -11.08896 -11.04397 -10.97962 -10.73249 -10.55361 -10.20513 -10.08748 -9.46783 -9.14124 -8.79404 -8.64106 -7.27319 -6.12990 -4.12076 2.85650 3.21154 3.31260 3.33414 3.43555 3.89711 4.34474 4.62627 4.74896 4.80680 4.94422 5.18402 5.34809 5.46071 5.53246 5.71729 5.76457 5.82698 5.90104 5.96706 6.15800 6.18628 6.28158 6.38768 6.48483 6.76206 6.87514 7.06453 7.41199 7.52693 7.65808 7.95920 8.44694 8.85626 8.93118 9.46079 10.99711 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.038028 B = 0.009417 C = 0.008451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.129579 B = 2972.638064 C = 3312.259008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.135 3.865 3 H 0.079 0.921 4 C -0.129 4.129 5 C -0.123 4.123 6 C -0.025 4.025 7 C 0.168 3.832 8 N -0.492 5.492 9 C -0.060 4.060 10 C 0.049 3.951 11 C 0.050 3.950 12 C -0.507 4.507 13 H 0.074 0.926 14 C 0.072 3.928 15 N -0.896 5.896 16 Si 0.871 3.129 17 H -0.276 1.276 18 H -0.264 1.264 19 H -0.285 1.285 20 N -0.448 5.448 21 H 0.059 0.941 22 H 0.093 0.907 23 H 0.070 0.930 24 H 0.075 0.925 25 H 0.082 0.918 26 H 0.075 0.925 27 H 0.066 0.934 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.162 0.838 31 H 0.040 0.960 32 H 0.022 0.978 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.971 2.790 9.520 14.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.032 3.968 3 H 0.097 0.903 4 C -0.167 4.167 5 C -0.161 4.161 6 C -0.064 4.064 7 C -0.093 4.093 8 N -0.211 5.211 9 C -0.206 4.206 10 C -0.067 4.067 11 C 0.012 3.988 12 C -0.546 4.546 13 H 0.092 0.908 14 C -0.130 4.130 15 N -0.534 5.534 16 Si 0.698 3.302 17 H -0.202 1.202 18 H -0.188 1.188 19 H -0.211 1.211 20 N -0.133 5.133 21 H 0.078 0.922 22 H 0.112 0.888 23 H 0.090 0.910 24 H 0.093 0.907 25 H 0.101 0.899 26 H 0.094 0.906 27 H 0.085 0.915 28 H 0.099 0.901 29 H 0.104 0.896 30 H 0.179 0.821 31 H 0.058 0.942 32 H 0.040 0.960 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 10.312 2.311 9.334 14.100 hybrid contribution -0.924 1.457 -0.169 1.733 sum 9.388 3.768 9.164 13.650 Atomic orbital electron populations 1.22348 0.91580 1.05351 1.02995 1.21460 0.96741 0.95531 0.83102 0.90316 1.21967 0.96086 1.01840 0.96817 1.21667 0.95995 0.99648 0.98825 1.20010 0.98802 0.98913 0.88665 1.22885 0.94356 0.96529 0.95518 1.69863 1.25411 1.25689 1.00120 1.21904 0.97630 1.01444 0.99585 1.21605 0.99153 1.03056 0.82884 1.18402 0.90663 0.93507 0.96247 1.20859 0.89591 0.99269 1.44853 0.90791 1.24950 0.95450 0.97616 0.95005 1.69888 0.99252 1.36595 1.47700 0.86917 0.78374 0.85833 0.79099 1.20210 1.18844 1.21072 1.45286 1.26411 1.33962 1.07614 0.92171 0.88830 0.91045 0.90666 0.89949 0.90603 0.91512 0.90144 0.89643 0.82062 0.94237 0.96038 0.92548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.90 8.05 37.16 0.30 -2.60 16 2 C 0.13 2.13 3.47 -67.81 -0.24 1.90 16 3 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 4 C -0.13 -1.57 5.24 -26.52 -0.14 -1.71 16 5 C -0.12 -1.35 5.96 -26.45 -0.16 -1.50 16 6 C -0.02 -0.34 6.33 -27.51 -0.17 -0.51 16 7 C 0.17 3.19 7.65 -155.24 -1.19 2.00 16 8 N -0.49 -10.63 11.24 -10.62 -0.12 -10.75 16 9 C -0.06 -1.34 11.80 -17.68 -0.21 -1.55 16 10 C 0.05 1.09 5.89 -81.80 -0.48 0.60 16 11 C 0.05 1.17 3.60 -29.04 -0.10 1.07 16 12 C -0.51 -13.80 8.19 -34.44 -0.28 -14.08 16 13 H 0.07 2.27 7.98 -52.48 -0.42 1.85 16 14 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 15 N -0.90 -26.62 13.96 55.43 0.77 -25.84 16 16 Si 0.87 20.55 27.47 -169.99 -4.67 15.88 16 17 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 18 H -0.26 -6.00 6.54 56.52 0.37 -5.63 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 20 N -0.45 -8.73 2.99 -102.16 -0.31 -9.03 16 21 H 0.06 0.86 8.13 -51.93 -0.42 0.43 16 22 H 0.09 1.90 4.58 -51.93 -0.24 1.66 16 23 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 24 H 0.07 0.97 8.09 -51.93 -0.42 0.55 16 25 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.07 0.73 8.12 -51.93 -0.42 0.30 16 28 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 30 H 0.16 3.39 8.06 -52.48 -0.42 2.96 16 31 H 0.04 0.93 7.20 -51.93 -0.37 0.56 16 32 H 0.02 0.49 5.61 -51.93 -0.29 0.19 16 33 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 263.01 15.07 3.96 3.96 Total: -1.00 -31.26 263.01 -7.84 -39.10 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -4.71 Total: 1.17 kcal Atomic # 6 Polarization: -11.71 SS G_CDS: -2.77 Total: -14.48 kcal Atomic # 7 Polarization: -45.98 SS G_CDS: 0.35 Total: -45.63 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -4.67 Total: 15.88 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -31.26 -7.84 -39.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260616243.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.611 kcal (2) G-P(sol) polarization free energy of solvation -31.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds