Wall clock time and date at job start Mon Mar 30 2020 02:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09005 * 109.57792 * 2 1 4 4 C 1.53263 * 109.58253 * 120.27501 * 2 1 3 5 5 C 1.53155 * 109.48744 * 170.30499 * 4 2 1 6 6 C 1.53392 * 109.23953 * 290.51171 * 5 4 2 7 7 C 1.51043 * 108.21408 * 48.82179 * 6 5 4 8 8 N 1.30090 * 127.39218 * 164.06824 * 7 6 5 9 9 C 1.34284 * 109.21135 * 180.02562 * 8 7 6 10 10 C 1.34852 * 108.07230 * 359.96923 * 9 8 7 11 11 C 1.50703 * 126.65234 * 179.97438 * 10 9 8 12 12 C 1.50696 * 109.47096 * 85.93045 * 11 10 9 13 13 H 1.08004 * 120.00384 * 359.97438 * 12 11 10 14 14 C 1.37882 * 120.00125 * 179.97438 * 12 11 10 15 15 N 1.31509 * 120.00074 * 179.97438 * 14 12 11 16 16 Si 1.86803 * 119.99936 * 0.02562 * 14 12 11 17 17 H 1.48497 * 109.47295 * 269.99810 * 16 14 12 18 18 H 1.48504 * 109.46923 * 30.00048 * 16 14 12 19 19 H 1.48497 * 109.47093 * 149.99477 * 16 14 12 20 20 N 1.35422 * 123.97902 * 344.37421 * 7 6 5 21 21 H 1.09004 * 109.46562 * 291.78188 * 1 2 3 22 22 H 1.08997 * 109.47472 * 51.78164 * 1 2 3 23 23 H 1.08999 * 109.47257 * 171.78667 * 1 2 3 24 24 H 1.08994 * 109.46622 * 50.30825 * 4 2 1 25 25 H 1.08998 * 109.46575 * 290.31005 * 4 2 1 26 26 H 1.09001 * 109.50704 * 170.57720 * 5 4 2 27 27 H 1.09005 * 109.50966 * 50.44520 * 5 4 2 28 28 H 1.08998 * 109.71405 * 289.13785 * 6 5 4 29 29 H 1.09003 * 109.74976 * 168.52272 * 6 5 4 30 30 H 1.08004 * 125.96312 * 179.97438 * 9 8 7 31 31 H 1.08995 * 109.47510 * 325.92748 * 11 10 9 32 32 H 1.08999 * 109.46989 * 205.92803 * 11 10 9 33 33 H 0.97003 * 120.00022 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0437 -0.7280 1.2470 5 6 3.5558 -0.9402 1.1282 6 6 3.8366 -1.9727 0.0291 7 6 3.0493 -1.5809 -1.1989 8 7 3.2184 -2.0091 -2.4156 9 6 2.3183 -1.4211 -3.2201 10 6 1.5615 -0.5959 -2.4685 11 6 0.4259 0.2705 -2.9490 12 6 -0.8493 -0.5325 -2.9586 13 1 -0.8385 -1.5669 -2.6482 14 6 -2.0299 0.0534 -3.3636 15 7 -3.1426 -0.6475 -3.3724 16 14 -2.0486 1.8423 -3.9012 17 1 -2.3107 2.7100 -2.7249 18 1 -0.7331 2.1950 -4.4932 19 1 -3.1167 2.0440 -4.9129 20 7 2.0275 -0.6922 -1.1912 21 1 -0.3632 0.3814 0.9544 22 1 -0.3634 0.6357 -0.8074 23 1 -0.3634 -1.0171 -0.1468 24 1 1.5471 -1.6943 1.3339 25 1 1.8294 -0.1285 2.1317 26 1 3.9481 -1.3036 2.0781 27 1 4.0369 0.0039 0.8724 28 1 3.5252 -2.9616 0.3655 29 1 4.9013 -1.9821 -0.2042 30 1 2.2179 -1.5811 -4.2835 31 1 0.6402 0.6241 -3.9575 32 1 0.3126 1.1244 -2.2811 33 1 -3.9731 -0.2354 -3.6577 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260616243.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:39 Heat of formation + Delta-G solvation = 23.197395 kcal Electronic energy + Delta-G solvation = -15333.464393 eV Core-core repulsion = 12972.554198 eV Total energy + Delta-G solvation = -2360.910195 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.21933 -37.82211 -35.90054 -34.41377 -32.17741 -31.42235 -29.29402 -27.17331 -24.47581 -23.69976 -22.89586 -21.17781 -19.68569 -19.00655 -17.53174 -16.63423 -16.19646 -15.60386 -15.40177 -15.15596 -14.86822 -14.32825 -14.17577 -14.03922 -13.64297 -13.26050 -12.99249 -12.58106 -12.43688 -12.36079 -12.02602 -11.89063 -11.86337 -11.61524 -11.50799 -10.85658 -10.70733 -10.32570 -8.94395 -8.29260 -6.34089 1.26910 1.34427 1.38736 1.49149 2.01727 2.24579 2.33787 3.04528 3.48503 3.65244 3.77105 3.78298 4.13817 4.22339 4.38234 4.48975 4.57510 4.66234 4.75469 4.81120 4.88860 4.92384 4.98900 5.01170 5.11612 5.24660 5.33366 5.47438 5.51424 5.70631 5.93248 6.24565 6.51099 6.69668 7.24537 7.28337 8.87222 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.038028 B = 0.009417 C = 0.008451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.129579 B = 2972.638064 C = 3312.259008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.124 3.876 3 H 0.100 0.900 4 C -0.124 4.124 5 C -0.114 4.114 6 C -0.029 4.029 7 C 0.179 3.821 8 N -0.525 5.525 9 C -0.079 4.079 10 C 0.019 3.981 11 C 0.062 3.938 12 C -0.502 4.502 13 H 0.020 0.980 14 C 0.015 3.985 15 N -0.946 5.946 16 Si 0.942 3.058 17 H -0.259 1.259 18 H -0.247 1.247 19 H -0.285 1.285 20 N -0.450 5.450 21 H 0.096 0.904 22 H 0.062 0.938 23 H 0.032 0.968 24 H 0.063 0.937 25 H 0.119 0.881 26 H 0.115 0.885 27 H 0.073 0.927 28 H 0.091 0.909 29 H 0.103 0.897 30 H 0.160 0.840 31 H 0.039 0.961 32 H 0.038 0.962 33 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.709 4.668 11.712 17.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.023 3.977 3 H 0.117 0.883 4 C -0.162 4.162 5 C -0.152 4.152 6 C -0.068 4.068 7 C -0.083 4.083 8 N -0.244 5.244 9 C -0.225 4.225 10 C -0.097 4.097 11 C 0.024 3.976 12 C -0.540 4.540 13 H 0.038 0.962 14 C -0.183 4.183 15 N -0.586 5.586 16 Si 0.765 3.235 17 H -0.184 1.184 18 H -0.171 1.171 19 H -0.210 1.210 20 N -0.135 5.135 21 H 0.115 0.885 22 H 0.081 0.919 23 H 0.051 0.949 24 H 0.082 0.918 25 H 0.138 0.862 26 H 0.133 0.867 27 H 0.091 0.909 28 H 0.109 0.891 29 H 0.121 0.879 30 H 0.177 0.823 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 12.064 4.196 11.543 17.216 hybrid contribution -1.447 0.741 -0.792 1.808 sum 10.617 4.937 10.751 15.896 Atomic orbital electron populations 1.22221 0.93315 1.02276 1.03723 1.21870 0.95381 0.97058 0.83413 0.88261 1.22019 0.96888 1.01429 0.95832 1.21686 0.94918 0.99147 0.99414 1.20367 0.98903 1.00389 0.87095 1.24055 0.93499 0.94397 0.96367 1.69867 1.26165 1.26946 1.01449 1.22078 0.98384 1.01933 1.00092 1.21426 0.99594 1.04027 0.84679 1.18178 0.89237 0.93584 0.96627 1.20850 0.91753 0.97231 1.44214 0.96152 1.25844 0.94678 1.02799 0.94935 1.70048 1.00156 1.39083 1.49346 0.85784 0.79008 0.79563 0.79157 1.18381 1.17084 1.21042 1.45553 1.26255 1.34041 1.07602 0.88526 0.91937 0.94910 0.91789 0.86232 0.86669 0.90866 0.89071 0.87917 0.82264 0.94257 0.94445 0.92365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.44 8.05 71.98 0.58 -4.86 16 2 C 0.12 3.66 3.47 45.09 0.16 3.82 16 3 H 0.10 2.56 8.14 -2.38 -0.02 2.54 16 4 C -0.12 -2.51 5.24 30.73 0.16 -2.35 16 5 C -0.11 -1.92 5.96 30.78 0.18 -1.74 16 6 C -0.03 -0.69 6.33 30.09 0.19 -0.49 16 7 C 0.18 6.60 7.65 138.23 1.06 7.65 16 8 N -0.52 -22.85 11.24 -187.51 -2.11 -24.96 16 9 C -0.08 -3.67 11.80 83.54 0.99 -2.68 16 10 C 0.02 0.87 5.89 41.09 0.24 1.12 16 11 C 0.06 2.95 3.60 29.10 0.10 3.06 16 12 C -0.50 -28.50 8.19 25.60 0.21 -28.29 16 13 H 0.02 1.33 7.98 -2.91 -0.02 1.31 16 14 C 0.01 0.84 5.47 84.66 0.46 1.31 16 15 N -0.95 -58.26 13.96 21.45 0.30 -57.96 16 16 Si 0.94 42.39 27.47 68.60 1.88 44.28 16 17 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 18 H -0.25 -10.40 6.54 99.48 0.65 -9.75 16 19 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 20 N -0.45 -17.27 2.99 -477.12 -1.43 -18.69 16 21 H 0.10 2.53 8.13 -2.38 -0.02 2.52 16 22 H 0.06 2.53 4.58 -2.39 -0.01 2.52 16 23 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 24 H 0.06 1.47 8.09 -2.39 -0.02 1.45 16 25 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16 26 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.07 1.20 8.12 -2.38 -0.02 1.19 16 28 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 30 H 0.16 7.07 8.06 -2.91 -0.02 7.05 16 31 H 0.04 1.86 7.20 -2.39 -0.02 1.84 16 32 H 0.04 1.66 5.61 -2.39 -0.01 1.65 16 33 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -72.02 263.01 4.01 -68.01 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: 1.03 Total: 12.79 kcal Atomic # 6 Polarization: -27.80 SS G_CDS: 4.33 Total: -23.47 kcal Atomic # 7 Polarization: -98.37 SS G_CDS: -3.24 Total: -101.61 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 1.88 Total: 44.28 kcal Total: -72.02 4.01 -68.01 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260616243.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.208 kcal (2) G-P(sol) polarization free energy of solvation -72.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds