Wall clock time and date at job start Mon Mar 30 2020 02:43:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46897 * 110.99799 * 2 1 4 4 C 1.46894 * 111.00225 * 123.95591 * 2 1 3 5 5 C 1.53004 * 109.46984 * 60.66606 * 4 2 1 6 6 C 1.50703 * 109.47261 * 180.66283 * 4 2 1 7 7 H 1.07996 * 119.99571 * 120.00045 * 6 4 2 8 8 C 1.37876 * 120.00124 * 300.00576 * 6 4 2 9 9 N 1.31517 * 119.99893 * 359.97438 * 8 6 4 10 10 Si 1.86799 * 119.99967 * 179.97438 * 8 6 4 11 11 H 1.48504 * 109.47142 * 59.99538 * 10 8 6 12 12 H 1.48495 * 109.46945 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.46720 * 299.99424 * 10 8 6 14 14 C 1.50694 * 109.47547 * 300.66940 * 4 2 1 15 15 C 1.38220 * 119.62220 * 174.40705 * 14 4 2 16 16 C 1.38637 * 119.16430 * 180.02562 * 15 14 4 17 17 C 1.38673 * 118.41662 * 359.97438 * 16 15 14 18 18 C 1.38183 * 119.16539 * 0.28573 * 17 16 15 19 19 N 1.31858 * 119.61459 * 354.42219 * 14 4 2 20 20 H 1.09006 * 109.47063 * 302.00596 * 1 2 3 21 21 H 1.08997 * 109.47668 * 62.00849 * 1 2 3 22 22 H 1.09004 * 109.47291 * 182.01169 * 1 2 3 23 23 H 1.09004 * 109.47355 * 178.13044 * 3 2 1 24 24 H 1.08994 * 109.47754 * 298.13200 * 3 2 1 25 25 H 1.09001 * 109.47046 * 58.13636 * 3 2 1 26 26 H 1.08999 * 109.47453 * 299.99774 * 5 4 2 27 27 H 1.09000 * 109.47293 * 60.00013 * 5 4 2 28 28 H 1.09007 * 109.47158 * 179.97438 * 5 4 2 29 29 H 0.96995 * 119.99625 * 179.97438 * 9 8 6 30 30 H 1.07996 * 120.41924 * 359.97438 * 15 14 4 31 31 H 1.07993 * 120.78945 * 180.02562 * 16 15 14 32 32 H 1.08001 * 120.41939 * 180.02562 * 17 16 15 33 33 H 1.08004 * 119.61873 * 179.70051 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 1.5185 -2.2165 1.0401 6 6 3.5019 -0.7299 1.1133 7 1 4.0453 -0.3096 1.9466 8 6 4.1862 -1.2333 0.0274 9 7 3.5244 -1.7454 -0.9872 10 14 6.0534 -1.1879 -0.0028 11 1 6.5861 -1.9618 1.1472 12 1 6.5426 -1.7863 -1.2708 13 1 6.5158 0.2201 0.0913 14 6 1.4990 -0.1594 2.4245 15 6 1.7738 -0.7858 3.6256 16 6 1.3120 -0.2198 4.8039 17 6 0.5882 0.9608 4.7296 18 6 0.3479 1.5266 3.4920 19 7 0.8072 0.9626 2.3918 20 1 -0.3633 0.5447 0.8715 21 1 -0.3634 0.4823 -0.9074 22 1 -0.3634 -1.0271 0.0361 23 1 3.0845 1.3426 0.0335 24 1 1.6733 1.8843 -0.9062 25 1 1.6191 1.9050 0.8728 26 1 0.4290 -2.2427 1.0576 27 1 1.8776 -2.6553 0.1092 28 1 1.9096 -2.7850 1.8839 29 1 4.0058 -2.0992 -1.7513 30 1 2.3404 -1.7049 3.6459 31 1 1.5119 -0.6866 5.7570 32 1 0.2135 1.4299 5.6273 33 1 -0.2191 2.4433 3.4253 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260618648.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:19 Heat of formation + Delta-G solvation = 51.377015 kcal Electronic energy + Delta-G solvation = -15720.378144 eV Core-core repulsion = 13360.689910 eV Total energy + Delta-G solvation = -2359.688235 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.33032 -38.22027 -34.50838 -33.13479 -32.62459 -30.13397 -28.62935 -26.41731 -25.07823 -24.06017 -23.58883 -20.86719 -18.35828 -17.52135 -17.00372 -16.58519 -16.04398 -15.37840 -15.18383 -15.03214 -14.85433 -14.45393 -13.58094 -13.30036 -12.88367 -12.79702 -12.75680 -12.57656 -12.50901 -12.28103 -12.00019 -11.71125 -11.62278 -10.98367 -10.50048 -10.42701 -10.28567 -9.57896 -8.24056 -7.86789 -6.09692 0.43225 0.55474 1.45128 1.46942 1.52853 2.48759 3.08699 3.24922 3.62637 3.98670 4.14925 4.17137 4.39312 4.52075 4.66573 4.80571 4.87854 4.95844 5.02910 5.07472 5.18017 5.23759 5.33050 5.38372 5.45375 5.47358 5.55725 5.73774 5.97869 6.12691 6.30866 6.69049 6.99570 7.19536 7.35002 7.58237 9.09545 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.030802 B = 0.011836 C = 0.010339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.808137 B = 2365.011412 C = 2707.595002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.512 5.512 3 C 0.048 3.952 4 C 0.276 3.724 5 C -0.114 4.114 6 C -0.528 4.528 7 H 0.039 0.961 8 C 0.049 3.951 9 N -0.864 5.864 10 Si 0.936 3.064 11 H -0.272 1.272 12 H -0.285 1.285 13 H -0.281 1.281 14 C 0.114 3.886 15 C -0.182 4.182 16 C -0.080 4.080 17 C -0.186 4.186 18 C 0.072 3.928 19 N -0.503 5.503 20 H 0.046 0.954 21 H 0.045 0.955 22 H 0.042 0.958 23 H 0.036 0.964 24 H 0.034 0.966 25 H 0.045 0.955 26 H 0.021 0.979 27 H 0.071 0.929 28 H 0.037 0.963 29 H 0.255 0.745 30 H 0.125 0.875 31 H 0.159 0.841 32 H 0.164 0.836 33 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.160 3.326 9.217 11.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.234 5.234 3 C -0.101 4.101 4 C 0.186 3.814 5 C -0.172 4.172 6 C -0.568 4.568 7 H 0.057 0.943 8 C -0.155 4.155 9 N -0.499 5.499 10 Si 0.763 3.237 11 H -0.197 1.197 12 H -0.210 1.210 13 H -0.207 1.207 14 C -0.024 4.024 15 C -0.202 4.202 16 C -0.106 4.106 17 C -0.205 4.205 18 C -0.085 4.085 19 N -0.213 5.213 20 H 0.064 0.936 21 H 0.064 0.936 22 H 0.061 0.939 23 H 0.055 0.945 24 H 0.053 0.947 25 H 0.064 0.936 26 H 0.040 0.960 27 H 0.090 0.910 28 H 0.056 0.944 29 H 0.065 0.935 30 H 0.143 0.857 31 H 0.176 0.824 32 H 0.182 0.818 33 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -5.161 3.390 7.769 9.924 hybrid contribution 1.046 -0.066 1.137 1.546 sum -4.115 3.324 8.906 10.358 Atomic orbital electron populations 1.22486 0.90454 0.99860 1.00068 1.62238 1.04982 1.12571 1.43634 1.22083 0.99141 0.90121 0.98772 1.17722 0.93068 0.90059 0.80503 1.21711 0.96324 0.97015 1.02180 1.20791 0.89985 1.42164 1.03811 0.94318 1.25409 1.00688 0.94358 0.95095 1.70131 1.35460 1.37829 1.06527 0.85989 0.82483 0.77944 0.77300 1.19727 1.21002 1.20732 1.22982 0.90977 0.90388 0.98061 1.22074 1.02235 1.02334 0.93608 1.21905 0.94813 0.95270 0.98565 1.22322 1.01251 0.97162 0.99792 1.23332 0.96877 0.99733 0.88520 1.67707 1.10959 1.10315 1.32289 0.93636 0.93597 0.93895 0.94488 0.94694 0.93645 0.96038 0.91020 0.94363 0.93515 0.85682 0.82369 0.81809 0.81041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.87 8.91 127.69 1.14 2.01 16 2 N -0.51 -25.46 4.15 -907.28 -3.76 -29.22 16 3 C 0.05 2.27 8.98 127.69 1.15 3.42 16 4 C 0.28 13.62 0.16 2.04 0.00 13.62 16 5 C -0.11 -5.50 7.79 71.98 0.56 -4.94 16 6 C -0.53 -28.44 6.12 25.60 0.16 -28.28 16 7 H 0.04 2.13 7.72 -2.91 -0.02 2.11 16 8 C 0.05 2.65 5.18 84.65 0.44 3.09 16 9 N -0.86 -48.46 10.80 21.45 0.23 -48.22 16 10 Si 0.94 43.15 29.54 68.60 2.03 45.17 16 11 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 12 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 13 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 14 C 0.11 4.95 4.94 42.55 0.21 5.16 16 15 C -0.18 -6.92 8.93 22.36 0.20 -6.72 16 16 C -0.08 -2.31 10.18 22.47 0.23 -2.08 16 17 C -0.19 -4.85 10.11 22.36 0.23 -4.62 16 18 C 0.07 2.23 11.18 84.67 0.95 3.17 16 19 N -0.50 -20.12 4.33 -183.89 -0.80 -20.91 16 20 H 0.05 1.92 5.40 -2.38 -0.01 1.91 16 21 H 0.05 1.86 8.14 -2.39 -0.02 1.85 16 22 H 0.04 1.86 6.02 -2.38 -0.01 1.85 16 23 H 0.04 1.93 6.70 -2.39 -0.02 1.91 16 24 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 25 H 0.05 2.09 5.41 -2.39 -0.01 2.07 16 26 H 0.02 0.95 6.29 -2.39 -0.02 0.93 16 27 H 0.07 3.84 6.07 -2.39 -0.01 3.83 16 28 H 0.04 1.72 7.08 -2.38 -0.02 1.71 16 29 H 0.26 13.83 8.31 -92.71 -0.77 13.06 16 30 H 0.13 4.79 7.24 -2.91 -0.02 4.77 16 31 H 0.16 3.35 8.06 -2.91 -0.02 3.33 16 32 H 0.16 2.85 8.06 -2.91 -0.02 2.83 16 33 H 0.17 4.10 8.06 -2.91 -0.02 4.07 16 Total: -1.00 -61.61 259.33 4.05 -57.56 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: 1.09 Total: 11.79 kcal Atomic # 6 Polarization: -21.42 SS G_CDS: 5.25 Total: -16.16 kcal Atomic # 7 Polarization: -94.03 SS G_CDS: -4.33 Total: -98.36 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.17 kcal Total: -61.61 4.05 -57.56 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260618648.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.939 kcal (2) G-P(sol) polarization free energy of solvation -61.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds