Wall clock time and date at job start Mon Mar 30 2020 03:10:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46499 * 109.47280 * 2 1 4 4 N 1.28479 * 124.85845 * 270.04642 * 3 2 1 5 5 C 1.32756 * 109.93021 * 179.97438 * 4 3 2 6 6 C 1.41431 * 126.56602 * 179.97438 * 5 4 3 7 7 H 1.08002 * 119.99626 * 180.02562 * 6 5 4 8 8 C 1.39852 * 120.00090 * 0.03080 * 6 5 4 9 9 N 1.30895 * 119.99722 * 359.97438 * 8 6 5 10 10 Si 1.86793 * 119.99978 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47161 * 359.97438 * 10 8 6 12 12 H 1.48501 * 109.47559 * 119.99697 * 10 8 6 13 13 H 1.48500 * 109.47022 * 239.99734 * 10 8 6 14 14 C 1.42230 * 106.86476 * 359.78528 * 5 4 3 15 15 C 1.35072 * 105.54683 * 0.33989 * 14 5 4 16 16 C 1.50699 * 126.31173 * 179.97438 * 15 14 5 17 17 C 1.53782 * 113.61510 * 34.68880 * 16 15 14 18 18 C 1.53781 * 87.08260 * 220.02009 * 17 16 15 19 19 C 1.53786 * 87.17350 * 25.39213 * 18 17 16 20 20 H 1.08991 * 109.47292 * 60.00557 * 1 2 3 21 21 H 1.09011 * 109.46630 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.47160 * 299.99714 * 1 2 3 23 23 H 1.09003 * 109.47516 * 240.00051 * 2 1 3 24 24 H 1.09004 * 109.47398 * 119.99716 * 2 1 3 25 25 H 0.97001 * 119.99382 * 180.02562 * 9 8 6 26 26 H 1.07992 * 127.23056 * 180.26588 * 14 5 4 27 27 H 1.09002 * 112.84923 * 165.88739 * 16 15 14 28 28 H 1.09001 * 113.61250 * 105.46827 * 17 16 15 29 29 H 1.08997 * 113.61225 * 334.56668 * 17 16 15 30 30 H 1.09002 * 113.61445 * 139.98212 * 18 17 16 31 31 H 1.09002 * 113.61408 * 270.79943 * 18 17 16 32 32 H 1.08993 * 113.61491 * 89.15923 * 19 18 17 33 33 H 1.09000 * 113.61138 * 220.06261 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2623 2.0738 -1.0543 5 6 2.6897 3.2833 -0.7123 6 6 3.0583 4.3269 -1.5928 7 1 3.3935 5.2742 -1.1970 8 6 2.9886 4.1321 -2.9759 9 7 2.5827 2.9838 -3.4555 10 14 3.4747 5.5107 -4.1389 11 1 3.8939 6.6979 -3.3514 12 1 4.6014 5.0615 -4.9956 13 1 2.3148 5.8689 -4.9942 14 6 2.7016 3.3300 0.7092 15 6 2.2775 2.1135 1.1150 16 6 2.1145 1.6553 2.5414 17 6 1.6498 2.7675 3.4964 18 6 2.6313 2.1846 4.5268 19 6 3.4325 1.6303 3.3369 20 1 -0.3633 0.5137 -0.8899 21 1 -0.3633 -1.0278 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.8934 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 2.5348 2.8487 -4.4149 26 1 2.9904 4.1628 1.3332 27 1 1.5353 0.7359 2.6270 28 1 0.6041 2.6807 3.7917 29 1 1.9140 3.7701 3.1604 30 1 3.1664 2.9433 5.0979 31 1 2.1938 1.4104 5.1572 32 1 4.1848 2.3214 2.9572 33 1 3.8238 0.6267 3.5036 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260622296.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:27 Heat of formation + Delta-G solvation = 83.081472 kcal Electronic energy + Delta-G solvation = -14955.325151 eV Core-core repulsion = 12597.011725 eV Total energy + Delta-G solvation = -2358.313426 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.55600 -37.94607 -33.90258 -32.50111 -29.26517 -28.83227 -25.59689 -25.23565 -24.48788 -22.30735 -20.25856 -19.18167 -18.20505 -16.64190 -15.67304 -14.95412 -14.57274 -14.19189 -13.86951 -13.65836 -12.69769 -12.36778 -12.09969 -11.98356 -11.93877 -11.43224 -11.33244 -10.99199 -10.92774 -10.71999 -10.54092 -10.12884 -10.08415 -10.05726 -9.67314 -9.04600 -8.19855 -7.30608 -7.10842 -6.15241 -3.99702 3.21499 3.31053 3.36138 3.50568 4.13326 4.31101 4.53822 4.99544 5.01706 5.05864 5.32511 5.37921 5.64517 5.72472 5.78083 5.84379 5.88528 5.95828 6.07194 6.12647 6.14251 6.21841 6.26940 6.48786 6.57177 6.74827 6.91209 7.42539 7.54936 7.59666 7.98446 8.50696 8.84337 9.16288 9.41962 10.47629 10.83455 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.033307 B = 0.008508 C = 0.007138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.450829 B = 3290.171721 C = 3921.880200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.135 3.865 3 N -0.330 5.330 4 N -0.325 5.325 5 C 0.188 3.812 6 C -0.450 4.450 7 H 0.076 0.924 8 C 0.072 3.928 9 N -0.785 5.785 10 Si 0.900 3.100 11 H -0.265 1.265 12 H -0.280 1.280 13 H -0.280 1.280 14 C -0.282 4.282 15 C -0.004 4.004 16 C -0.036 4.036 17 C -0.125 4.125 18 C -0.144 4.144 19 C -0.128 4.128 20 H 0.065 0.935 21 H 0.061 0.939 22 H 0.053 0.947 23 H 0.083 0.917 24 H 0.071 0.929 25 H 0.264 0.736 26 H 0.118 0.882 27 H 0.081 0.919 28 H 0.060 0.940 29 H 0.088 0.912 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.815 -4.418 10.250 11.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.012 3.988 3 N -0.114 5.114 4 N -0.156 5.156 5 C 0.039 3.961 6 C -0.489 4.489 7 H 0.094 0.906 8 C -0.145 4.145 9 N -0.415 5.415 10 Si 0.726 3.274 11 H -0.190 1.190 12 H -0.205 1.205 13 H -0.206 1.206 14 C -0.313 4.313 15 C -0.129 4.129 16 C -0.056 4.056 17 C -0.163 4.163 18 C -0.182 4.182 19 C -0.166 4.166 20 H 0.084 0.916 21 H 0.080 0.920 22 H 0.072 0.928 23 H 0.102 0.898 24 H 0.089 0.911 25 H 0.075 0.925 26 H 0.136 0.864 27 H 0.100 0.900 28 H 0.079 0.921 29 H 0.106 0.894 30 H 0.083 0.917 31 H 0.092 0.908 32 H 0.104 0.896 33 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.169 -5.426 9.131 10.841 hybrid contribution 0.350 1.091 0.037 1.146 sum -1.819 -4.335 9.168 10.303 Atomic orbital electron populations 1.22144 0.95794 1.01393 1.02950 1.21240 0.94272 0.80885 1.02418 1.45502 1.51398 1.11068 1.03440 1.74723 1.27365 1.06071 1.07446 1.19272 0.95864 0.91380 0.89617 1.18530 1.42676 0.98069 0.89614 0.90616 1.25716 0.94232 0.95716 0.98847 1.69995 1.36129 1.22476 1.12897 0.86403 0.78403 0.82121 0.80448 1.18953 1.20547 1.20558 1.21250 1.17042 0.96891 0.96106 1.20766 1.09539 0.94125 0.88497 1.20842 0.97304 0.98134 0.89284 1.22943 0.98496 0.99292 0.95609 1.22828 0.98642 1.00293 0.96399 1.23004 0.96841 1.00988 0.95782 0.91573 0.91993 0.92767 0.89832 0.91060 0.92534 0.86435 0.90032 0.92079 0.89364 0.91709 0.90773 0.89572 0.92189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.64 10.24 37.16 0.38 -2.26 16 2 C 0.13 2.47 6.66 -4.04 -0.03 2.44 16 3 N -0.33 -7.87 3.32 -56.98 -0.19 -8.06 16 4 N -0.32 -9.36 10.24 32.34 0.33 -9.02 16 5 C 0.19 5.50 6.78 -84.72 -0.57 4.93 16 6 C -0.45 -13.22 9.42 -37.76 -0.36 -13.58 16 7 H 0.08 2.11 7.84 -52.49 -0.41 1.70 16 8 C 0.07 2.03 5.49 -17.35 -0.10 1.94 16 9 N -0.79 -23.23 11.97 55.54 0.67 -22.56 16 10 Si 0.90 20.79 29.56 -169.99 -5.02 15.77 16 11 H -0.27 -5.98 7.11 56.52 0.40 -5.57 16 12 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 13 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 14 C -0.28 -7.07 10.08 -39.18 -0.39 -7.46 16 15 C 0.00 -0.09 6.19 -81.92 -0.51 -0.60 16 16 C -0.04 -0.59 3.86 -90.86 -0.35 -0.94 16 17 C -0.13 -1.84 7.55 -25.92 -0.20 -2.04 16 18 C -0.14 -1.78 8.08 -25.92 -0.21 -1.99 16 19 C -0.13 -1.88 7.63 -25.82 -0.20 -2.07 16 20 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 21 H 0.06 0.77 8.14 -51.92 -0.42 0.35 16 22 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 23 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 24 H 0.07 1.09 7.29 -51.93 -0.38 0.71 16 25 H 0.26 7.19 8.30 -40.82 -0.34 6.85 16 26 H 0.12 2.71 7.47 -52.49 -0.39 2.32 16 27 H 0.08 1.24 7.27 -51.93 -0.38 0.86 16 28 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.09 1.40 6.96 -51.93 -0.36 1.04 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.09 1.39 8.04 -51.93 -0.42 0.97 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 276.70 15.07 4.17 4.17 Total: -1.00 -32.80 276.70 -7.43 -40.23 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -4.85 Total: 1.12 kcal Atomic # 6 Polarization: -19.11 SS G_CDS: -2.53 Total: -21.64 kcal Atomic # 7 Polarization: -40.45 SS G_CDS: 0.81 Total: -39.65 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -32.80 -7.43 -40.23 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260622296.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.312 kcal (2) G-P(sol) polarization free energy of solvation -32.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.231 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds