Wall clock time and date at job start Mon Mar 30 2020 03:10:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46499 * 109.47280 * 2 1 4 4 N 1.28479 * 124.85845 * 270.04642 * 3 2 1 5 5 C 1.32756 * 109.93021 * 179.97438 * 4 3 2 6 6 C 1.41431 * 126.56602 * 179.97438 * 5 4 3 7 7 H 1.08002 * 119.99626 * 180.02562 * 6 5 4 8 8 C 1.39852 * 120.00090 * 0.03080 * 6 5 4 9 9 N 1.30895 * 119.99722 * 359.97438 * 8 6 5 10 10 Si 1.86793 * 119.99978 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47161 * 359.97438 * 10 8 6 12 12 H 1.48501 * 109.47559 * 119.99697 * 10 8 6 13 13 H 1.48500 * 109.47022 * 239.99734 * 10 8 6 14 14 C 1.42230 * 106.86476 * 359.78528 * 5 4 3 15 15 C 1.35072 * 105.54683 * 0.33989 * 14 5 4 16 16 C 1.50699 * 126.31173 * 179.97438 * 15 14 5 17 17 C 1.53782 * 113.61510 * 34.68880 * 16 15 14 18 18 C 1.53781 * 87.08260 * 220.02009 * 17 16 15 19 19 C 1.53786 * 87.17350 * 25.39213 * 18 17 16 20 20 H 1.08991 * 109.47292 * 60.00557 * 1 2 3 21 21 H 1.09011 * 109.46630 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.47160 * 299.99714 * 1 2 3 23 23 H 1.09003 * 109.47516 * 240.00051 * 2 1 3 24 24 H 1.09004 * 109.47398 * 119.99716 * 2 1 3 25 25 H 0.97001 * 119.99382 * 180.02562 * 9 8 6 26 26 H 1.07992 * 127.23056 * 180.26588 * 14 5 4 27 27 H 1.09002 * 112.84923 * 165.88739 * 16 15 14 28 28 H 1.09001 * 113.61250 * 105.46827 * 17 16 15 29 29 H 1.08997 * 113.61225 * 334.56668 * 17 16 15 30 30 H 1.09002 * 113.61445 * 139.98212 * 18 17 16 31 31 H 1.09002 * 113.61408 * 270.79943 * 18 17 16 32 32 H 1.08993 * 113.61491 * 89.15923 * 19 18 17 33 33 H 1.09000 * 113.61138 * 220.06261 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2623 2.0738 -1.0543 5 6 2.6897 3.2833 -0.7123 6 6 3.0583 4.3269 -1.5928 7 1 3.3935 5.2742 -1.1970 8 6 2.9886 4.1321 -2.9759 9 7 2.5827 2.9838 -3.4555 10 14 3.4747 5.5107 -4.1389 11 1 3.8939 6.6979 -3.3514 12 1 4.6014 5.0615 -4.9956 13 1 2.3148 5.8689 -4.9942 14 6 2.7016 3.3300 0.7092 15 6 2.2775 2.1135 1.1150 16 6 2.1145 1.6553 2.5414 17 6 1.6498 2.7675 3.4964 18 6 2.6313 2.1846 4.5268 19 6 3.4325 1.6303 3.3369 20 1 -0.3633 0.5137 -0.8899 21 1 -0.3633 -1.0278 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.8934 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 2.5348 2.8487 -4.4149 26 1 2.9904 4.1628 1.3332 27 1 1.5353 0.7359 2.6270 28 1 0.6041 2.6807 3.7917 29 1 1.9140 3.7701 3.1604 30 1 3.1664 2.9433 5.0979 31 1 2.1938 1.4104 5.1572 32 1 4.1848 2.3214 2.9572 33 1 3.8238 0.6267 3.5036 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260622296.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:27 Heat of formation + Delta-G solvation = 62.852288 kcal Electronic energy + Delta-G solvation = -14956.202354 eV Core-core repulsion = 12597.011725 eV Total energy + Delta-G solvation = -2359.190629 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.40230 -39.20711 -35.75580 -34.36811 -31.00799 -30.67800 -27.53392 -26.40824 -25.91071 -23.91079 -21.99747 -20.91168 -19.70749 -18.36894 -17.55723 -16.45423 -16.14881 -15.88570 -15.36023 -15.21256 -14.50508 -13.98599 -13.43758 -13.38331 -13.23656 -13.04947 -12.88152 -12.69362 -12.56196 -12.44093 -12.09847 -11.82585 -11.46479 -11.29625 -11.22216 -11.04855 -10.20121 -9.31247 -9.02223 -8.25887 -6.18326 1.38501 1.40539 1.56588 1.74248 2.33818 2.44282 2.51757 3.65586 3.81747 3.83665 3.91128 3.94886 4.15286 4.25760 4.39482 4.41938 4.66376 4.77592 4.81397 4.88362 4.96726 5.04487 5.13319 5.15573 5.21722 5.32507 5.39368 5.52023 5.56444 5.82728 5.96432 6.47916 6.91464 7.05144 7.28698 8.45318 8.74961 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.033307 B = 0.008508 C = 0.007138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.450829 B = 3290.171721 C = 3921.880200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.121 3.879 3 N -0.337 5.337 4 N -0.366 5.366 5 C 0.145 3.855 6 C -0.489 4.489 7 H 0.075 0.925 8 C 0.020 3.980 9 N -0.827 5.827 10 Si 0.983 3.017 11 H -0.257 1.257 12 H -0.271 1.271 13 H -0.271 1.271 14 C -0.317 4.317 15 C 0.021 3.979 16 C -0.045 4.045 17 C -0.128 4.128 18 C -0.121 4.121 19 C -0.128 4.128 20 H 0.029 0.971 21 H 0.106 0.894 22 H 0.059 0.941 23 H 0.074 0.926 24 H 0.112 0.888 25 H 0.269 0.731 26 H 0.124 0.876 27 H 0.108 0.892 28 H 0.077 0.923 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.103 0.897 32 H 0.062 0.938 33 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.170 -5.355 12.149 13.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.000 4.000 3 N -0.122 5.122 4 N -0.198 5.198 5 C -0.005 4.005 6 C -0.528 4.528 7 H 0.093 0.907 8 C -0.193 4.193 9 N -0.457 5.457 10 Si 0.805 3.195 11 H -0.181 1.181 12 H -0.196 1.196 13 H -0.196 1.196 14 C -0.347 4.347 15 C -0.105 4.105 16 C -0.065 4.065 17 C -0.166 4.166 18 C -0.158 4.158 19 C -0.167 4.167 20 H 0.049 0.951 21 H 0.124 0.876 22 H 0.078 0.922 23 H 0.092 0.908 24 H 0.130 0.870 25 H 0.078 0.922 26 H 0.142 0.858 27 H 0.126 0.874 28 H 0.096 0.904 29 H 0.085 0.915 30 H 0.094 0.906 31 H 0.122 0.878 32 H 0.081 0.919 33 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.530 -6.377 11.044 13.002 hybrid contribution 0.426 1.262 -0.450 1.406 sum -2.105 -5.115 10.594 11.952 Atomic orbital electron populations 1.22059 0.93817 1.03807 1.01421 1.21717 0.95903 0.78384 1.03961 1.45981 1.50580 1.12606 1.03007 1.74569 1.28392 1.06627 1.10175 1.19743 0.97054 0.91992 0.91705 1.18908 1.44233 0.98574 0.91047 0.90710 1.26682 0.93676 0.98617 1.00283 1.70130 1.37310 1.24799 1.13462 0.85151 0.78273 0.78439 0.77646 1.18086 1.19605 1.19646 1.21394 1.19571 0.98952 0.94752 1.21485 1.05671 0.92720 0.90670 1.21223 0.99633 0.99959 0.85672 1.22935 1.00235 0.97613 0.95866 1.22767 0.96852 1.00811 0.95411 1.22966 0.95500 1.01825 0.96371 0.95127 0.87561 0.92164 0.90760 0.87026 0.92163 0.85777 0.87399 0.90416 0.91471 0.90558 0.87847 0.91903 0.90198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.63 10.24 71.98 0.74 -3.89 16 2 C 0.12 4.27 6.66 86.38 0.58 4.85 16 3 N -0.34 -16.23 3.32 -334.17 -1.11 -17.34 16 4 N -0.37 -21.92 10.24 -51.60 -0.53 -22.45 16 5 C 0.15 8.91 6.78 40.78 0.28 9.19 16 6 C -0.49 -30.16 9.42 23.45 0.22 -29.94 16 7 H 0.07 4.39 7.84 -2.91 -0.02 4.37 16 8 C 0.02 1.19 5.49 85.22 0.47 1.65 16 9 N -0.83 -50.81 11.97 21.81 0.26 -50.55 16 10 Si 0.98 43.97 29.56 68.60 2.03 46.00 16 11 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 12 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 13 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 14 C -0.32 -16.48 10.08 22.53 0.23 -16.25 16 15 C 0.02 0.94 6.19 41.20 0.26 1.20 16 16 C -0.04 -1.38 3.86 -10.95 -0.04 -1.42 16 17 C -0.13 -3.43 7.55 31.12 0.24 -3.20 16 18 C -0.12 -2.49 8.08 31.12 0.25 -2.24 16 19 C -0.13 -3.40 7.63 31.18 0.24 -3.16 16 20 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 21 H 0.11 2.27 8.14 -2.38 -0.02 2.25 16 22 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 23 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 24 H 0.11 3.01 7.29 -2.38 -0.02 2.99 16 25 H 0.27 15.12 8.30 -92.71 -0.77 14.35 16 26 H 0.12 6.01 7.47 -2.91 -0.02 5.99 16 27 H 0.11 2.77 7.27 -2.39 -0.02 2.76 16 28 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.07 2.09 6.96 -2.39 -0.02 2.07 16 30 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.06 1.96 8.04 -2.39 -0.02 1.94 16 33 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -76.04 276.70 5.17 -70.87 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: 1.08 Total: 16.69 kcal Atomic # 6 Polarization: -46.66 SS G_CDS: 3.44 Total: -43.22 kcal Atomic # 7 Polarization: -88.96 SS G_CDS: -1.38 Total: -90.34 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -76.04 5.17 -70.87 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260622296.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.720 kcal (2) G-P(sol) polarization free energy of solvation -76.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds