Wall clock time and date at job start Mon Mar 30 2020 03:06:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.47356 * 2 1 4 4 C 1.50699 * 109.46556 * 120.00048 * 2 1 3 5 5 H 1.08003 * 119.99587 * 120.00263 * 4 2 1 6 6 C 1.37872 * 120.00146 * 299.99567 * 4 2 1 7 7 N 1.31518 * 120.00143 * 180.02562 * 6 4 2 8 8 Si 1.86796 * 120.00054 * 0.02562 * 6 4 2 9 9 H 1.48509 * 109.47270 * 89.99947 * 8 6 4 10 10 H 1.48500 * 109.47688 * 209.99753 * 8 6 4 11 11 H 1.48498 * 109.47316 * 330.00136 * 8 6 4 12 12 C 1.50704 * 109.46866 * 239.99894 * 2 1 3 13 13 N 1.30748 * 125.61295 * 144.97741 * 12 2 1 14 14 C 1.33577 * 109.15018 * 179.97438 * 13 12 2 15 15 C 1.35029 * 107.97427 * 0.05346 * 14 13 12 16 16 N 1.35308 * 125.61559 * 324.99972 * 12 2 1 17 17 H 0.97000 * 126.49977 * 0.22540 * 16 12 2 18 18 C 1.50651 * 124.45407 * 179.85328 * 15 14 13 19 19 C 1.53395 * 108.38236 * 343.58329 * 18 15 14 20 20 C 1.53119 * 109.44691 * 49.64630 * 19 18 15 21 21 C 1.50864 * 128.03878 * 180.02562 * 14 13 12 22 22 H 1.09000 * 109.46727 * 300.00262 * 1 2 3 23 23 H 1.08999 * 109.46580 * 59.99827 * 1 2 3 24 24 H 1.08999 * 109.47356 * 179.97438 * 1 2 3 25 25 H 0.96996 * 120.00310 * 180.02562 * 7 6 4 26 26 H 1.09004 * 109.68131 * 103.30702 * 18 15 14 27 27 H 1.09006 * 109.68049 * 223.86015 * 18 15 14 28 28 H 1.09004 * 109.47724 * 169.63718 * 19 18 15 29 29 H 1.09000 * 109.47992 * 289.64646 * 19 18 15 30 30 H 1.09002 * 109.46001 * 50.00497 * 20 19 18 31 31 H 1.09001 * 109.46221 * 169.96829 * 20 19 18 32 32 H 1.09000 * 109.67234 * 43.58633 * 21 14 13 33 33 H 1.09005 * 109.70232 * 283.06649 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 2.1379 -0.8591 3.5566 8 14 0.6249 1.2791 2.6541 9 1 -0.8028 0.8728 2.6997 10 1 0.9759 1.9952 3.9068 11 1 0.8472 2.1765 1.4920 12 6 2.0324 -0.7105 -1.2305 13 7 3.1068 -0.3960 -1.9059 14 6 3.2418 -1.2401 -2.9324 15 6 2.2110 -2.1114 -2.8937 16 7 1.4455 -1.7785 -1.8185 17 1 0.6316 -2.2207 -1.5305 18 6 1.9983 -3.2246 -3.8862 19 6 2.8647 -2.9443 -5.1206 20 6 4.2963 -2.6296 -4.6778 21 6 4.3280 -1.2646 -3.9791 22 1 -0.3633 0.5139 0.8900 23 1 -0.3632 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.9033 -0.5279 4.4375 26 1 2.2913 -4.1751 -3.4402 27 1 0.9481 -3.2626 -4.1757 28 1 2.8691 -3.8210 -5.7683 29 1 2.4571 -2.0925 -5.6649 30 1 4.6404 -3.3997 -3.9873 31 1 4.9494 -2.6061 -5.5502 32 1 5.2982 -1.1177 -3.5046 33 1 4.1528 -0.4742 -4.7090 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260624499.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:27 Heat of formation + Delta-G solvation = 34.066358 kcal Electronic energy + Delta-G solvation = -14911.695503 eV Core-core repulsion = 12551.256622 eV Total energy + Delta-G solvation = -2360.438881 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.62830 -36.56719 -34.23957 -32.52347 -31.43285 -29.43007 -27.95974 -25.21054 -23.47390 -22.08172 -21.42201 -19.43458 -18.49594 -16.85598 -16.61628 -15.23753 -14.86709 -14.06640 -13.70987 -13.61593 -13.28284 -13.02985 -12.78634 -12.54005 -12.33020 -11.76099 -11.26912 -11.10143 -10.81403 -10.71475 -10.67875 -10.52636 -10.20588 -9.60474 -9.31605 -9.11557 -9.07206 -8.63891 -7.29424 -6.13777 -4.15097 2.70857 3.21326 3.34705 3.36445 3.76638 3.87203 4.33980 4.84325 4.94475 4.97347 5.15260 5.25385 5.46301 5.65488 5.69526 5.73769 5.83199 5.89120 6.03193 6.08238 6.14120 6.20232 6.30469 6.37359 6.43556 6.60672 6.78637 6.94291 7.22771 7.47984 7.58156 8.11447 8.43897 8.88939 8.94369 9.44803 10.99058 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.053638 B = 0.007192 C = 0.007048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.887869 B = 3892.369957 C = 3971.829754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.084 3.916 3 H 0.061 0.939 4 C -0.511 4.511 5 H 0.074 0.926 6 C 0.074 3.926 7 N -0.895 5.895 8 Si 0.887 3.113 9 H -0.278 1.278 10 H -0.294 1.294 11 H -0.263 1.263 12 C 0.274 3.726 13 N -0.499 5.499 14 C 0.000 4.000 15 C -0.062 4.062 16 N -0.558 5.558 17 H 0.414 0.586 18 C -0.035 4.035 19 C -0.110 4.110 20 C -0.117 4.117 21 C -0.030 4.030 22 H 0.052 0.948 23 H 0.035 0.965 24 H 0.049 0.951 25 H 0.266 0.734 26 H 0.070 0.930 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.945 -3.339 -15.008 15.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.064 3.936 3 H 0.078 0.922 4 C -0.550 4.550 5 H 0.093 0.907 6 C -0.129 4.129 7 N -0.532 5.532 8 Si 0.717 3.283 9 H -0.205 1.205 10 H -0.221 1.221 11 H -0.188 1.188 12 C 0.010 3.990 13 N -0.218 5.218 14 C -0.130 4.130 15 C -0.178 4.178 16 N -0.159 5.159 17 H 0.251 0.749 18 C -0.074 4.074 19 C -0.148 4.148 20 C -0.155 4.155 21 C -0.068 4.068 22 H 0.070 0.930 23 H 0.054 0.946 24 H 0.068 0.932 25 H 0.076 0.924 26 H 0.088 0.912 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.091 0.909 33 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.352 -2.685 -14.650 14.955 hybrid contribution -1.561 -0.191 0.401 1.623 sum -2.914 -2.875 -14.249 14.826 Atomic orbital electron populations 1.22216 0.98379 1.00713 0.99679 1.17852 0.91310 0.96615 0.87864 0.92158 1.20780 1.32579 1.13829 0.87799 0.90744 1.24946 0.95712 0.96618 0.95575 1.69879 1.45138 1.40256 0.97976 0.86853 0.80287 0.83750 0.77429 1.20517 1.22130 1.18799 1.23755 0.90530 0.88144 0.96560 1.69989 1.17159 1.27821 1.06796 1.20405 0.97927 0.96273 0.98431 1.20670 0.97834 1.04016 0.95242 1.42829 1.23473 1.26873 1.22698 0.74882 1.19952 0.99831 0.94681 0.92919 1.21509 0.95490 1.01457 0.96379 1.21585 0.96409 0.97507 0.99953 1.19843 0.96047 0.96698 0.94241 0.92986 0.94590 0.93181 0.92412 0.91181 0.91658 0.91574 0.91666 0.91717 0.91614 0.90875 0.91354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.16 8.42 37.16 0.31 -2.85 16 2 C 0.08 2.04 2.36 -92.92 -0.22 1.82 16 3 H 0.06 1.52 7.20 -51.93 -0.37 1.15 16 4 C -0.51 -14.46 9.13 -34.44 -0.31 -14.78 16 5 H 0.07 2.35 7.98 -52.48 -0.42 1.93 16 6 C 0.07 2.11 5.45 -17.82 -0.10 2.01 16 7 N -0.90 -27.19 13.96 55.43 0.77 -26.41 16 8 Si 0.89 21.45 24.37 -169.99 -4.14 17.31 16 9 H -0.28 -6.43 6.87 56.52 0.39 -6.04 16 10 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 11 H -0.26 -6.12 6.53 56.52 0.37 -5.75 16 12 C 0.27 6.25 6.81 -154.97 -1.06 5.19 16 13 N -0.50 -11.68 11.25 -6.95 -0.08 -11.75 16 14 C 0.00 0.00 6.98 -82.89 -0.58 -0.58 16 15 C -0.06 -1.09 7.08 -81.85 -0.58 -1.67 16 16 N -0.56 -10.62 5.90 -6.53 -0.04 -10.66 16 17 H 0.41 6.78 8.16 -40.82 -0.33 6.45 16 18 C -0.04 -0.45 6.30 -27.70 -0.17 -0.62 16 19 C -0.11 -1.19 5.91 -26.47 -0.16 -1.34 16 20 C -0.12 -1.35 5.90 -26.48 -0.16 -1.51 16 21 C -0.03 -0.45 6.30 -27.61 -0.17 -0.62 16 22 H 0.05 1.12 3.27 -51.93 -0.17 0.95 16 23 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.05 0.95 7.42 -51.93 -0.39 0.57 16 25 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 26 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.70 8.12 -51.93 -0.42 0.28 16 30 H 0.06 0.79 8.11 -51.93 -0.42 0.36 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 33 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 262.19 15.07 3.95 3.95 Total: -1.00 -32.28 262.19 -7.39 -39.67 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -4.66 Total: 2.84 kcal Atomic # 6 Polarization: -11.75 SS G_CDS: -3.19 Total: -14.94 kcal Atomic # 7 Polarization: -49.49 SS G_CDS: 0.66 Total: -48.83 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.14 Total: 17.31 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -32.28 -7.39 -39.67 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260624499.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.737 kcal (2) G-P(sol) polarization free energy of solvation -32.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds