Wall clock time and date at job start Mon Mar 30 2020 03:20:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.40077 * 126.03887 * 2 1 4 4 C 1.30841 * 108.20617 * 179.85844 * 3 2 1 5 5 C 1.50704 * 125.89830 * 180.15213 * 4 3 2 6 6 C 1.50701 * 109.46866 * 305.29425 * 5 4 3 7 7 H 1.08005 * 120.00090 * 0.02562 * 6 5 4 8 8 C 1.37873 * 119.99782 * 180.02562 * 6 5 4 9 9 N 1.31514 * 120.00273 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99832 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47352 * 60.00347 * 10 8 6 12 12 H 1.48510 * 109.47143 * 180.02562 * 10 8 6 13 13 H 1.48503 * 109.47291 * 300.00149 * 10 8 6 14 14 C 1.39867 * 108.19839 * 0.40353 * 4 3 2 15 15 C 1.34948 * 126.03607 * 180.31277 * 2 1 3 16 16 C 1.50700 * 126.12348 * 0.02562 * 15 2 1 17 17 C 1.53786 * 113.61280 * 242.49417 * 16 15 2 18 18 C 1.53777 * 87.08215 * 220.02322 * 17 16 15 19 19 C 1.53774 * 87.08290 * 25.42991 * 18 17 16 20 20 H 1.09001 * 109.47060 * 269.69144 * 1 2 3 21 21 H 1.09004 * 109.47073 * 29.68633 * 1 2 3 22 22 H 1.09000 * 109.47212 * 149.68716 * 1 2 3 23 23 H 1.08999 * 109.47255 * 65.29597 * 5 4 3 24 24 H 1.09000 * 109.46524 * 185.30095 * 5 4 3 25 25 H 0.96998 * 119.99916 * 179.97438 * 9 8 6 26 26 H 1.08002 * 126.03737 * 179.74379 * 14 4 3 27 27 H 1.09001 * 112.85680 * 13.79701 * 16 15 2 28 28 H 1.08999 * 113.61139 * 334.56654 * 17 16 15 29 29 H 1.08996 * 113.61541 * 105.46983 * 17 16 15 30 30 H 1.09004 * 113.60932 * 270.88333 * 18 17 16 31 31 H 1.09000 * 113.69658 * 139.99320 * 18 17 16 32 32 H 1.09000 * 113.62002 * 220.01864 * 19 18 17 33 33 H 1.09004 * 113.61753 * 89.11864 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2892 1.1327 0.0000 4 6 3.5347 0.7320 0.0031 5 6 4.7498 1.6235 0.0074 6 6 4.6723 2.5838 -1.1514 7 1 3.8275 2.5520 -1.8236 8 6 5.6799 3.5029 -1.3536 9 7 6.7088 3.5413 -0.5354 10 14 5.5836 4.6937 -2.7896 11 1 4.3599 5.5252 -2.6620 12 1 6.7816 5.5713 -2.7861 13 1 5.5332 3.9308 -4.0627 14 6 3.5437 -0.6666 -0.0042 15 6 2.2590 -1.0912 -0.0060 16 6 1.7973 -2.5257 -0.0143 17 6 2.2276 -3.3186 1.2311 18 6 2.5026 -4.5008 0.2869 19 6 2.7075 -3.4612 -0.8275 20 1 -0.3633 -0.0055 1.0277 21 1 -0.3633 0.8928 -0.5090 22 1 -0.3634 -0.8872 -0.5187 23 1 4.7860 2.1838 0.9417 24 1 5.6482 1.0135 -0.0856 25 1 7.4179 4.1877 -0.6778 26 1 4.4211 -1.2964 -0.0078 27 1 0.7391 -2.6286 -0.2548 28 1 3.1238 -2.9254 1.7109 29 1 1.4153 -3.5015 1.9345 30 1 1.6371 -5.1445 0.1297 31 1 3.4056 -5.0587 0.5350 32 1 2.2827 -3.7590 -1.7861 33 1 3.7350 -3.1068 -0.9106 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260637123.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:19 Heat of formation + Delta-G solvation = 83.724434 kcal Electronic energy + Delta-G solvation = -14526.446425 eV Core-core repulsion = 12168.160880 eV Total energy + Delta-G solvation = -2358.285545 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.70971 -38.24112 -33.75346 -32.27725 -29.89426 -28.64794 -25.74949 -25.54728 -25.01836 -22.88706 -20.53081 -18.71823 -18.54464 -16.48614 -16.13272 -15.32631 -14.87600 -14.45142 -14.25515 -13.56190 -12.70766 -12.57694 -12.41041 -12.33226 -12.12815 -11.84119 -11.59075 -11.33098 -10.93343 -10.67693 -10.50873 -10.47383 -10.41406 -9.78646 -9.49226 -9.22158 -8.37190 -8.08932 -7.71248 -5.93912 -3.94297 2.52186 3.19316 3.40559 3.43140 3.47153 3.76559 4.54711 4.59606 4.65832 4.68228 4.93679 4.98120 5.18297 5.39902 5.42437 5.47743 5.62664 5.64688 5.79365 5.85278 5.92904 5.97163 6.07952 6.36165 6.46292 6.57681 6.87270 7.49349 7.64239 7.71012 7.76255 8.03493 8.42006 8.76090 9.09206 9.67763 11.17306 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.039966 B = 0.006487 C = 0.006056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.424928 B = 4314.966203 C = 4622.320308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -0.394 5.394 3 N -0.296 5.296 4 C 0.118 3.882 5 C 0.088 3.912 6 C -0.503 4.503 7 H 0.057 0.943 8 C 0.056 3.944 9 N -0.898 5.898 10 Si 0.896 3.104 11 H -0.277 1.277 12 H -0.287 1.287 13 H -0.278 1.278 14 C -0.268 4.268 15 C 0.076 3.924 16 C -0.050 4.050 17 C -0.126 4.126 18 C -0.143 4.143 19 C -0.126 4.126 20 H 0.064 0.936 21 H 0.083 0.917 22 H 0.074 0.926 23 H 0.037 0.963 24 H 0.038 0.962 25 H 0.261 0.739 26 H 0.137 0.863 27 H 0.092 0.908 28 H 0.089 0.911 29 H 0.065 0.935 30 H 0.078 0.922 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.393 -14.514 1.725 17.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N -0.175 5.175 3 N -0.117 5.117 4 C -0.049 4.049 5 C 0.050 3.950 6 C -0.542 4.542 7 H 0.075 0.925 8 C -0.145 4.145 9 N -0.538 5.538 10 Si 0.724 3.276 11 H -0.203 1.203 12 H -0.213 1.213 13 H -0.203 1.203 14 C -0.298 4.298 15 C -0.051 4.051 16 C -0.070 4.070 17 C -0.164 4.164 18 C -0.180 4.180 19 C -0.164 4.164 20 H 0.082 0.918 21 H 0.102 0.898 22 H 0.093 0.907 23 H 0.055 0.945 24 H 0.056 0.944 25 H 0.071 0.929 26 H 0.154 0.846 27 H 0.110 0.890 28 H 0.107 0.893 29 H 0.084 0.916 30 H 0.096 0.904 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -11.191 -13.395 1.759 17.543 hybrid contribution 0.384 0.034 -0.817 0.903 sum -10.807 -13.361 0.943 17.210 Atomic orbital electron populations 1.21583 0.76151 1.03403 1.02227 1.48508 1.05732 1.04071 1.59237 1.77516 1.02037 1.05402 1.26758 1.23260 0.94301 0.93506 0.93805 1.17829 0.86650 0.92368 0.98177 1.21041 1.05942 1.16066 1.11104 0.92465 1.24976 0.95374 0.97483 0.96617 1.69941 1.09863 1.36603 1.37402 0.86587 0.77301 0.80914 0.82789 1.20258 1.21291 1.20325 1.21116 0.95448 0.95190 1.18027 1.20709 0.91528 0.89125 1.03708 1.21103 0.99476 0.87799 0.98612 1.22968 1.01991 0.95747 0.95682 1.22824 1.01812 0.96350 0.97047 1.22984 1.00788 0.95374 0.97261 0.91784 0.89835 0.90724 0.94542 0.94361 0.92906 0.84552 0.89013 0.89259 0.91592 0.90387 0.91137 0.91420 0.88954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.43 11.25 59.85 0.67 2.10 16 2 N -0.39 -7.44 4.01 -63.88 -0.26 -7.70 16 3 N -0.30 -7.12 12.53 33.67 0.42 -6.69 16 4 C 0.12 2.88 6.43 -82.40 -0.53 2.35 16 5 C 0.09 2.44 5.55 -29.03 -0.16 2.28 16 6 C -0.50 -14.98 9.06 -34.44 -0.31 -15.29 16 7 H 0.06 1.73 7.74 -52.48 -0.41 1.33 16 8 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 9 N -0.90 -27.32 13.29 55.43 0.74 -26.58 16 10 Si 0.90 22.51 29.54 -169.99 -5.02 17.49 16 11 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 13 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 14 C -0.27 -5.47 9.82 -40.02 -0.39 -5.86 16 15 C 0.08 1.33 6.19 -82.27 -0.51 0.82 16 16 C -0.05 -0.62 3.99 -90.96 -0.36 -0.98 16 17 C -0.13 -1.36 7.61 -25.92 -0.20 -1.56 16 18 C -0.14 -1.32 8.08 -25.92 -0.21 -1.52 16 19 C -0.13 -1.42 7.55 -25.92 -0.20 -1.61 16 20 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 21 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 22 H 0.07 0.75 7.04 -51.93 -0.37 0.38 16 23 H 0.04 1.06 8.14 -51.93 -0.42 0.64 16 24 H 0.04 1.06 8.12 -51.93 -0.42 0.64 16 25 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 26 H 0.14 2.52 7.40 -52.49 -0.39 2.13 16 27 H 0.09 0.98 7.01 -51.93 -0.36 0.62 16 28 H 0.09 1.08 8.02 -51.93 -0.42 0.66 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.09 1.15 6.92 -51.93 -0.36 0.79 16 LS Contribution 279.25 15.07 4.21 4.21 Total: -1.00 -33.43 279.25 -7.02 -40.45 By element: Atomic # 1 Polarization: 1.36 SS G_CDS: -4.82 Total: -3.45 kcal Atomic # 6 Polarization: -15.43 SS G_CDS: -2.30 Total: -17.73 kcal Atomic # 7 Polarization: -41.87 SS G_CDS: 0.90 Total: -40.97 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -33.43 -7.02 -40.45 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260637123.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.179 kcal (2) G-P(sol) polarization free energy of solvation -33.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds