Wall clock time and date at job start Mon Mar 30 2020 03:20:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.40077 * 126.03887 * 2 1 4 4 C 1.30841 * 108.20617 * 179.85844 * 3 2 1 5 5 C 1.50704 * 125.89830 * 180.15213 * 4 3 2 6 6 C 1.50701 * 109.46866 * 305.29425 * 5 4 3 7 7 H 1.08005 * 120.00090 * 0.02562 * 6 5 4 8 8 C 1.37873 * 119.99782 * 180.02562 * 6 5 4 9 9 N 1.31514 * 120.00273 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99832 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47352 * 60.00347 * 10 8 6 12 12 H 1.48510 * 109.47143 * 180.02562 * 10 8 6 13 13 H 1.48503 * 109.47291 * 300.00149 * 10 8 6 14 14 C 1.39867 * 108.19839 * 0.40353 * 4 3 2 15 15 C 1.34948 * 126.03607 * 180.31277 * 2 1 3 16 16 C 1.50700 * 126.12348 * 0.02562 * 15 2 1 17 17 C 1.53786 * 113.61280 * 242.49417 * 16 15 2 18 18 C 1.53777 * 87.08215 * 220.02322 * 17 16 15 19 19 C 1.53774 * 87.08290 * 25.42991 * 18 17 16 20 20 H 1.09001 * 109.47060 * 269.69144 * 1 2 3 21 21 H 1.09004 * 109.47073 * 29.68633 * 1 2 3 22 22 H 1.09000 * 109.47212 * 149.68716 * 1 2 3 23 23 H 1.08999 * 109.47255 * 65.29597 * 5 4 3 24 24 H 1.09000 * 109.46524 * 185.30095 * 5 4 3 25 25 H 0.96998 * 119.99916 * 179.97438 * 9 8 6 26 26 H 1.08002 * 126.03737 * 179.74379 * 14 4 3 27 27 H 1.09001 * 112.85680 * 13.79701 * 16 15 2 28 28 H 1.08999 * 113.61139 * 334.56654 * 17 16 15 29 29 H 1.08996 * 113.61541 * 105.46983 * 17 16 15 30 30 H 1.09004 * 113.60932 * 270.88333 * 18 17 16 31 31 H 1.09000 * 113.69658 * 139.99320 * 18 17 16 32 32 H 1.09000 * 113.62002 * 220.01864 * 19 18 17 33 33 H 1.09004 * 113.61753 * 89.11864 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2892 1.1327 0.0000 4 6 3.5347 0.7320 0.0031 5 6 4.7498 1.6235 0.0074 6 6 4.6723 2.5838 -1.1514 7 1 3.8275 2.5520 -1.8236 8 6 5.6799 3.5029 -1.3536 9 7 6.7088 3.5413 -0.5354 10 14 5.5836 4.6937 -2.7896 11 1 4.3599 5.5252 -2.6620 12 1 6.7816 5.5713 -2.7861 13 1 5.5332 3.9308 -4.0627 14 6 3.5437 -0.6666 -0.0042 15 6 2.2590 -1.0912 -0.0060 16 6 1.7973 -2.5257 -0.0143 17 6 2.2276 -3.3186 1.2311 18 6 2.5026 -4.5008 0.2869 19 6 2.7075 -3.4612 -0.8275 20 1 -0.3633 -0.0055 1.0277 21 1 -0.3633 0.8928 -0.5090 22 1 -0.3634 -0.8872 -0.5187 23 1 4.7860 2.1838 0.9417 24 1 5.6482 1.0135 -0.0856 25 1 7.4179 4.1877 -0.6778 26 1 4.4211 -1.2964 -0.0078 27 1 0.7391 -2.6286 -0.2548 28 1 3.1238 -2.9254 1.7109 29 1 1.4153 -3.5015 1.9345 30 1 1.6371 -5.1445 0.1297 31 1 3.4056 -5.0587 0.5350 32 1 2.2827 -3.7590 -1.7861 33 1 3.7350 -3.1068 -0.9106 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260637123.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:18 Heat of formation + Delta-G solvation = 62.671686 kcal Electronic energy + Delta-G solvation = -14527.359341 eV Core-core repulsion = 12168.160880 eV Total energy + Delta-G solvation = -2359.198461 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.19665 -39.23539 -35.70756 -34.12397 -31.36784 -30.55422 -27.25589 -26.46302 -26.18690 -24.90346 -21.73646 -20.34252 -19.67460 -18.42005 -17.81880 -16.52408 -16.33932 -16.11895 -15.49546 -14.82022 -14.44908 -14.23661 -13.79986 -13.58303 -13.33670 -13.21153 -13.02679 -12.92554 -12.59621 -12.57266 -12.04700 -11.73850 -11.50556 -11.30524 -11.28218 -11.03491 -10.60709 -9.77735 -9.27349 -8.21102 -6.31552 1.04119 1.37488 1.41798 1.49957 1.83921 1.99724 2.42718 3.10918 3.60569 3.71303 3.82293 3.87075 4.05037 4.13383 4.41883 4.43743 4.60010 4.68724 4.79674 4.87097 4.93025 4.99558 5.10358 5.13653 5.19289 5.25224 5.32523 5.51331 5.66739 5.73062 5.85286 6.18456 6.36660 6.75987 7.05426 7.35261 8.90138 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.039966 B = 0.006487 C = 0.006056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.424928 B = 4314.966203 C = 4622.320308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.388 5.388 3 N -0.342 5.342 4 C 0.086 3.914 5 C 0.097 3.903 6 C -0.526 4.526 7 H 0.046 0.954 8 C 0.005 3.995 9 N -0.929 5.929 10 Si 0.968 3.032 11 H -0.273 1.273 12 H -0.274 1.274 13 H -0.268 1.268 14 C -0.296 4.296 15 C 0.103 3.897 16 C -0.053 4.053 17 C -0.126 4.126 18 C -0.125 4.125 19 C -0.132 4.132 20 H 0.086 0.914 21 H 0.082 0.918 22 H 0.116 0.884 23 H 0.005 0.995 24 H 0.022 0.978 25 H 0.267 0.733 26 H 0.144 0.856 27 H 0.124 0.876 28 H 0.069 0.931 29 H 0.085 0.915 30 H 0.104 0.896 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.503 -16.315 0.859 20.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.170 5.170 3 N -0.164 5.164 4 C -0.079 4.079 5 C 0.059 3.941 6 C -0.564 4.564 7 H 0.064 0.936 8 C -0.193 4.193 9 N -0.569 5.569 10 Si 0.792 3.208 11 H -0.198 1.198 12 H -0.198 1.198 13 H -0.193 1.193 14 C -0.325 4.325 15 C -0.026 4.026 16 C -0.073 4.073 17 C -0.164 4.164 18 C -0.163 4.163 19 C -0.170 4.170 20 H 0.104 0.896 21 H 0.101 0.899 22 H 0.134 0.866 23 H 0.024 0.976 24 H 0.041 0.959 25 H 0.076 0.924 26 H 0.161 0.839 27 H 0.141 0.859 28 H 0.088 0.912 29 H 0.104 0.896 30 H 0.122 0.878 31 H 0.094 0.906 32 H 0.100 0.900 33 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -13.312 -15.196 0.900 20.222 hybrid contribution 0.942 0.526 -0.496 1.187 sum -12.370 -14.670 0.404 19.193 Atomic orbital electron populations 1.22103 0.72653 1.05448 1.04370 1.48901 1.07614 1.03094 1.57406 1.77322 1.02384 1.08469 1.28240 1.22835 0.93709 0.94928 0.96430 1.17485 0.88177 0.92248 0.96216 1.21244 1.06004 1.17355 1.11805 0.93604 1.25894 0.94691 0.99124 0.99554 1.70057 1.10454 1.37360 1.39007 0.85465 0.77771 0.78443 0.79114 1.19788 1.19843 1.19309 1.21216 0.97570 0.93512 1.20251 1.21416 0.90239 0.91145 0.99780 1.21498 1.01375 0.84090 1.00352 1.22952 1.01847 0.95989 0.95600 1.22789 1.03171 0.95629 0.94669 1.23006 0.99504 0.95812 0.98660 0.89569 0.89939 0.86581 0.97643 0.95933 0.92398 0.83869 0.85851 0.91246 0.89609 0.87804 0.90561 0.90022 0.90988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.19 11.25 127.77 1.44 3.62 16 2 N -0.39 -14.26 4.01 -356.02 -1.43 -15.69 16 3 N -0.34 -16.87 12.53 -47.38 -0.59 -17.47 16 4 C 0.09 4.42 6.43 43.10 0.28 4.70 16 5 C 0.10 5.75 5.55 29.10 0.16 5.92 16 6 C -0.53 -32.72 9.06 25.60 0.23 -32.49 16 7 H 0.05 2.89 7.74 -2.91 -0.02 2.86 16 8 C 0.01 0.33 5.46 84.65 0.46 0.79 16 9 N -0.93 -58.09 13.29 21.45 0.28 -57.80 16 10 Si 0.97 46.81 29.54 68.60 2.03 48.83 16 11 H -0.27 -12.92 7.11 99.48 0.71 -12.22 16 12 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 13 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 14 C -0.30 -12.45 9.82 21.99 0.22 -12.24 16 15 C 0.10 3.48 6.19 41.40 0.26 3.74 16 16 C -0.05 -1.15 3.99 -11.01 -0.04 -1.19 16 17 C -0.13 -2.33 7.61 31.12 0.24 -2.10 16 18 C -0.13 -1.82 8.08 31.12 0.25 -1.57 16 19 C -0.13 -2.60 7.55 31.12 0.23 -2.36 16 20 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 21 H 0.08 1.96 8.14 -2.38 -0.02 1.94 16 22 H 0.12 1.76 7.04 -2.39 -0.02 1.74 16 23 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 24 H 0.02 1.35 8.12 -2.39 -0.02 1.33 16 25 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 26 H 0.14 5.56 7.40 -2.91 -0.02 5.54 16 27 H 0.12 1.95 7.01 -2.39 -0.02 1.93 16 28 H 0.07 1.58 8.02 -2.39 -0.02 1.56 16 29 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.10 1.05 8.14 -2.38 -0.02 1.03 16 31 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.07 1.73 6.92 -2.39 -0.02 1.71 16 Total: -1.00 -76.14 279.25 5.09 -71.05 By element: Atomic # 1 Polarization: 3.16 SS G_CDS: 1.08 Total: 4.25 kcal Atomic # 6 Polarization: -36.90 SS G_CDS: 3.72 Total: -33.18 kcal Atomic # 7 Polarization: -89.21 SS G_CDS: -1.74 Total: -90.95 kcal Atomic # 14 Polarization: 46.81 SS G_CDS: 2.03 Total: 48.83 kcal Total: -76.14 5.09 -71.05 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260637123.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.724 kcal (2) G-P(sol) polarization free energy of solvation -76.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds