Wall clock time and date at job start Mon Mar 30 2020 02:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.72944 * 2 1 4 4 C 1.53284 * 109.60132 * 239.60849 * 2 1 3 5 5 C 1.53116 * 109.70535 * 189.46810 * 4 2 1 6 6 C 1.53488 * 109.31444 * 69.90219 * 5 4 2 7 7 C 1.50710 * 108.09698 * 311.26818 * 6 5 4 8 8 C 1.33774 * 128.75878 * 195.73015 * 7 6 5 9 9 N 1.34423 * 107.83215 * 179.97438 * 8 7 6 10 10 C 1.30787 * 109.31815 * 0.02562 * 9 8 7 11 11 C 1.50704 * 125.72026 * 180.02562 * 10 9 8 12 12 C 1.50699 * 109.47093 * 270.02832 * 11 10 9 13 13 H 1.08003 * 119.99967 * 359.97438 * 12 11 10 14 14 C 1.37878 * 119.99740 * 180.02562 * 12 11 10 15 15 N 1.31507 * 120.00396 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99991 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.47027 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47459 * 119.99539 * 16 14 12 19 19 H 1.48503 * 109.47224 * 240.00113 * 16 14 12 20 20 N 1.34401 * 108.55519 * 0.06172 * 10 9 8 21 21 H 1.09003 * 109.47103 * 180.39430 * 1 2 3 22 22 H 1.09000 * 109.47237 * 300.39189 * 1 2 3 23 23 H 1.09000 * 109.47434 * 60.39763 * 1 2 3 24 24 H 1.08998 * 109.43618 * 69.39607 * 4 2 1 25 25 H 1.09000 * 109.39307 * 309.50819 * 4 2 1 26 26 H 1.09003 * 109.49956 * 309.94949 * 5 4 2 27 27 H 1.09007 * 109.49827 * 189.85471 * 5 4 2 28 28 H 1.09002 * 109.74443 * 70.93332 * 6 5 4 29 29 H 1.09000 * 109.74526 * 191.60439 * 6 5 4 30 30 H 1.08006 * 126.06571 * 359.96830 * 8 7 6 31 31 H 1.08997 * 109.47230 * 30.02759 * 11 10 9 32 32 H 1.08992 * 109.47110 * 150.02737 * 11 10 9 33 33 H 0.96999 * 120.00316 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8979 1.0261 0.0000 4 6 2.0442 -0.7305 -1.2456 5 6 3.5568 -0.9398 -1.1337 6 6 3.8463 -1.9770 -0.0399 7 6 3.0627 -1.5927 1.1888 8 6 3.2151 -2.0206 2.4470 9 7 2.2921 -1.4048 3.2059 10 6 1.5744 -0.6104 2.4547 11 6 0.4371 0.2579 2.9277 12 6 -0.8547 -0.5129 2.8371 13 1 -0.8524 -1.5297 2.4729 14 6 -2.0396 0.0803 3.2180 15 7 -2.0425 1.3185 3.6609 16 14 -3.6410 -0.8749 3.1050 17 1 -3.3690 -2.2367 2.5789 18 1 -4.2521 -0.9781 4.4545 19 1 -4.5749 -0.1692 2.1912 20 7 2.0208 -0.6988 1.1900 21 1 -0.3633 -1.0277 0.0071 22 1 -0.3634 0.5199 0.8864 23 1 -0.3634 0.5076 -0.8935 24 1 1.8251 -0.1349 -2.1317 25 1 1.5494 -1.6983 -1.3277 26 1 4.0367 0.0044 -0.8759 27 1 3.9461 -1.2979 -2.0869 28 1 3.5377 -2.9658 -0.3792 29 1 4.9119 -1.9824 0.1897 30 1 3.9492 -2.7341 2.7915 31 1 0.6117 0.5538 3.9620 32 1 0.3741 1.1474 2.3010 33 1 -2.8760 1.7357 3.9293 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260668981.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:03 Heat of formation + Delta-G solvation = 40.483783 kcal Electronic energy + Delta-G solvation = -15334.981011 eV Core-core repulsion = 12974.820410 eV Total energy + Delta-G solvation = -2360.160601 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.61348 -36.54960 -34.07986 -32.66154 -30.30769 -29.45986 -27.82796 -25.32156 -23.10657 -22.37051 -21.47070 -19.55701 -18.32084 -16.38265 -16.04380 -14.91287 -14.47846 -14.33390 -13.95232 -13.69975 -13.48198 -12.64101 -12.45958 -12.20646 -12.01431 -11.72741 -11.26726 -10.99914 -10.93318 -10.83697 -10.78850 -10.68689 -9.92886 -9.87031 -9.45136 -8.98767 -8.70457 -8.48629 -7.33601 -6.09555 -4.12071 2.85956 3.27072 3.35678 3.40622 3.54650 4.04937 4.43117 4.74219 4.84809 4.89116 5.20883 5.24946 5.44262 5.55818 5.63838 5.68239 5.81757 5.83865 5.91951 5.97165 6.15473 6.24756 6.32850 6.43051 6.52942 7.02338 7.24353 7.32600 7.51170 7.65491 7.86226 8.06262 8.29577 8.89727 9.10718 9.50230 10.99733 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.036942 B = 0.009220 C = 0.008286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.763296 B = 3036.161244 C = 3378.473899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.138 3.862 3 H 0.079 0.921 4 C -0.128 4.128 5 C -0.123 4.123 6 C -0.036 4.036 7 C -0.065 4.065 8 C -0.029 4.029 9 N -0.514 5.514 10 C 0.268 3.732 11 C 0.092 3.908 12 C -0.502 4.502 13 H 0.057 0.943 14 C 0.061 3.939 15 N -0.892 5.892 16 Si 0.894 3.106 17 H -0.273 1.273 18 H -0.282 1.282 19 H -0.284 1.284 20 N -0.451 5.451 21 H 0.060 0.940 22 H 0.117 0.883 23 H 0.057 0.943 24 H 0.078 0.922 25 H 0.071 0.929 26 H 0.064 0.936 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.155 0.845 31 H 0.049 0.951 32 H 0.036 0.964 33 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.062 -2.546 -10.841 13.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.034 3.966 3 H 0.097 0.903 4 C -0.165 4.165 5 C -0.160 4.160 6 C -0.075 4.075 7 C -0.179 4.179 8 C -0.177 4.177 9 N -0.232 5.232 10 C 0.005 3.995 11 C 0.054 3.946 12 C -0.542 4.542 13 H 0.076 0.924 14 C -0.141 4.141 15 N -0.531 5.531 16 Si 0.722 3.278 17 H -0.197 1.197 18 H -0.208 1.208 19 H -0.210 1.210 20 N -0.135 5.135 21 H 0.079 0.921 22 H 0.135 0.865 23 H 0.076 0.924 24 H 0.097 0.903 25 H 0.090 0.910 26 H 0.083 0.917 27 H 0.087 0.913 28 H 0.089 0.911 29 H 0.095 0.905 30 H 0.173 0.827 31 H 0.067 0.933 32 H 0.054 0.946 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 7.788 -2.438 -10.051 12.946 hybrid contribution -0.758 -0.467 -0.890 1.259 sum 7.030 -2.905 -10.941 13.326 Atomic orbital electron populations 1.22568 0.91649 1.04114 1.05142 1.21426 0.96783 0.95358 0.82989 0.90257 1.21948 0.96081 1.01523 0.96997 1.21645 0.95934 0.99704 0.98766 1.20041 0.98419 0.98402 0.90613 1.20827 0.97396 1.01954 0.97685 1.21665 1.01905 1.04395 0.89740 1.70545 1.08281 1.11721 1.32699 1.24299 0.97645 0.98639 0.78875 1.17958 0.86897 0.91986 0.97764 1.20926 0.90315 0.99442 1.43487 0.92441 1.24939 0.99105 0.94972 0.95086 1.69946 1.27252 1.12371 1.43498 0.86484 0.83276 0.80149 0.77884 1.19729 1.20795 1.20965 1.45476 1.25784 1.33519 1.08672 0.92090 0.86457 0.92378 0.90302 0.91043 0.91738 0.91302 0.91072 0.90521 0.82748 0.93275 0.94596 0.92730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.21 8.21 37.16 0.30 -2.91 16 2 C 0.14 2.30 3.48 -67.80 -0.24 2.07 16 3 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 4 C -0.13 -1.65 5.22 -26.52 -0.14 -1.79 16 5 C -0.12 -1.43 5.96 -26.42 -0.16 -1.59 16 6 C -0.04 -0.48 6.31 -27.63 -0.17 -0.66 16 7 C -0.07 -1.20 6.57 -81.71 -0.54 -1.74 16 8 C -0.03 -0.59 11.83 -17.98 -0.21 -0.80 16 9 N -0.51 -12.57 11.27 -11.04 -0.12 -12.70 16 10 C 0.27 6.44 6.89 -155.76 -1.07 5.36 16 11 C 0.09 2.40 4.59 -29.03 -0.13 2.26 16 12 C -0.50 -13.73 6.94 -34.44 -0.24 -13.96 16 13 H 0.06 1.62 7.74 -52.48 -0.41 1.22 16 14 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 15 N -0.89 -25.38 13.29 55.43 0.74 -24.64 16 16 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 17 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 20 N -0.45 -9.11 2.98 -102.40 -0.31 -9.42 16 21 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 22 H 0.12 2.56 3.76 -51.93 -0.20 2.37 16 23 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 24 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.07 0.97 8.09 -51.93 -0.42 0.55 16 26 H 0.06 0.77 8.12 -51.93 -0.42 0.35 16 27 H 0.07 0.63 8.14 -51.92 -0.42 0.21 16 28 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 29 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 30 H 0.16 2.62 8.06 -52.48 -0.42 2.20 16 31 H 0.05 1.39 8.14 -51.93 -0.42 0.97 16 32 H 0.04 0.92 6.53 -51.93 -0.34 0.59 16 33 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 265.60 15.07 4.00 4.00 Total: -1.00 -30.62 265.60 -8.13 -38.75 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: -4.72 Total: -0.02 kcal Atomic # 6 Polarization: -9.50 SS G_CDS: -2.69 Total: -12.19 kcal Atomic # 7 Polarization: -47.06 SS G_CDS: 0.31 Total: -46.75 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -30.62 -8.13 -38.75 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260668981.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.231 kcal (2) G-P(sol) polarization free energy of solvation -30.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds