Wall clock time and date at job start Mon Mar 30 2020 02:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.72944 * 2 1 4 4 C 1.53284 * 109.60132 * 239.60849 * 2 1 3 5 5 C 1.53116 * 109.70535 * 189.46810 * 4 2 1 6 6 C 1.53488 * 109.31444 * 69.90219 * 5 4 2 7 7 C 1.50710 * 108.09698 * 311.26818 * 6 5 4 8 8 C 1.33774 * 128.75878 * 195.73015 * 7 6 5 9 9 N 1.34423 * 107.83215 * 179.97438 * 8 7 6 10 10 C 1.30787 * 109.31815 * 0.02562 * 9 8 7 11 11 C 1.50704 * 125.72026 * 180.02562 * 10 9 8 12 12 C 1.50699 * 109.47093 * 270.02832 * 11 10 9 13 13 H 1.08003 * 119.99967 * 359.97438 * 12 11 10 14 14 C 1.37878 * 119.99740 * 180.02562 * 12 11 10 15 15 N 1.31507 * 120.00396 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99991 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.47027 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47459 * 119.99539 * 16 14 12 19 19 H 1.48503 * 109.47224 * 240.00113 * 16 14 12 20 20 N 1.34401 * 108.55519 * 0.06172 * 10 9 8 21 21 H 1.09003 * 109.47103 * 180.39430 * 1 2 3 22 22 H 1.09000 * 109.47237 * 300.39189 * 1 2 3 23 23 H 1.09000 * 109.47434 * 60.39763 * 1 2 3 24 24 H 1.08998 * 109.43618 * 69.39607 * 4 2 1 25 25 H 1.09000 * 109.39307 * 309.50819 * 4 2 1 26 26 H 1.09003 * 109.49956 * 309.94949 * 5 4 2 27 27 H 1.09007 * 109.49827 * 189.85471 * 5 4 2 28 28 H 1.09002 * 109.74443 * 70.93332 * 6 5 4 29 29 H 1.09000 * 109.74526 * 191.60439 * 6 5 4 30 30 H 1.08006 * 126.06571 * 359.96830 * 8 7 6 31 31 H 1.08997 * 109.47230 * 30.02759 * 11 10 9 32 32 H 1.08992 * 109.47110 * 150.02737 * 11 10 9 33 33 H 0.96999 * 120.00316 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8979 1.0261 0.0000 4 6 2.0442 -0.7305 -1.2456 5 6 3.5568 -0.9398 -1.1337 6 6 3.8463 -1.9770 -0.0399 7 6 3.0627 -1.5927 1.1888 8 6 3.2151 -2.0206 2.4470 9 7 2.2921 -1.4048 3.2059 10 6 1.5744 -0.6104 2.4547 11 6 0.4371 0.2579 2.9277 12 6 -0.8547 -0.5129 2.8371 13 1 -0.8524 -1.5297 2.4729 14 6 -2.0396 0.0803 3.2180 15 7 -2.0425 1.3185 3.6609 16 14 -3.6410 -0.8749 3.1050 17 1 -3.3690 -2.2367 2.5789 18 1 -4.2521 -0.9781 4.4545 19 1 -4.5749 -0.1692 2.1912 20 7 2.0208 -0.6988 1.1900 21 1 -0.3633 -1.0277 0.0071 22 1 -0.3634 0.5199 0.8864 23 1 -0.3634 0.5076 -0.8935 24 1 1.8251 -0.1349 -2.1317 25 1 1.5494 -1.6983 -1.3277 26 1 4.0367 0.0044 -0.8759 27 1 3.9461 -1.2979 -2.0869 28 1 3.5377 -2.9658 -0.3792 29 1 4.9119 -1.9824 0.1897 30 1 3.9492 -2.7341 2.7915 31 1 0.6117 0.5538 3.9620 32 1 0.3741 1.1474 2.3010 33 1 -2.8760 1.7357 3.9293 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260668981.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:03 Heat of formation + Delta-G solvation = 22.264665 kcal Electronic energy + Delta-G solvation = -15335.771051 eV Core-core repulsion = 12974.820410 eV Total energy + Delta-G solvation = -2360.950641 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.18230 -37.82738 -35.87635 -34.30941 -31.92870 -31.19130 -29.30293 -26.89297 -24.99464 -23.71707 -22.79140 -21.10998 -19.73492 -18.52031 -17.59078 -16.56726 -16.22688 -15.54528 -15.30062 -14.93109 -14.83402 -14.36160 -14.01616 -13.85465 -13.79140 -13.20070 -12.84040 -12.69993 -12.54152 -12.36029 -11.93873 -11.89875 -11.78671 -11.53369 -11.34471 -10.68414 -10.61867 -10.31054 -8.95294 -8.20602 -6.31874 1.28321 1.37366 1.40597 1.51837 2.06829 2.29712 2.46376 3.09524 3.62580 3.75513 3.82872 3.93628 4.08593 4.21752 4.33847 4.51074 4.65421 4.70899 4.83423 4.87267 4.94482 5.00816 5.03190 5.15110 5.18261 5.33717 5.38296 5.59367 5.67709 5.78099 6.02463 6.11133 6.53518 6.72283 7.33873 7.43027 8.87919 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.036942 B = 0.009220 C = 0.008286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.763296 B = 3036.161244 C = 3378.473899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.126 3.874 3 H 0.087 0.913 4 C -0.121 4.121 5 C -0.118 4.118 6 C -0.037 4.037 7 C -0.042 4.042 8 C -0.063 4.063 9 N -0.552 5.552 10 C 0.227 3.773 11 C 0.110 3.890 12 C -0.506 4.506 13 H 0.042 0.958 14 C 0.016 3.984 15 N -0.922 5.922 16 Si 0.959 3.041 17 H -0.273 1.273 18 H -0.279 1.279 19 H -0.269 1.269 20 N -0.448 5.448 21 H 0.042 0.958 22 H 0.074 0.926 23 H 0.091 0.909 24 H 0.111 0.889 25 H 0.066 0.934 26 H 0.063 0.937 27 H 0.107 0.893 28 H 0.089 0.911 29 H 0.102 0.898 30 H 0.183 0.817 31 H 0.009 0.991 32 H 0.030 0.970 33 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.913 -3.511 -13.689 16.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.024 3.976 3 H 0.105 0.895 4 C -0.158 4.158 5 C -0.156 4.156 6 C -0.075 4.075 7 C -0.157 4.157 8 C -0.209 4.209 9 N -0.272 5.272 10 C -0.036 4.036 11 C 0.071 3.929 12 C -0.545 4.545 13 H 0.060 0.940 14 C -0.183 4.183 15 N -0.562 5.562 16 Si 0.784 3.216 17 H -0.197 1.197 18 H -0.205 1.205 19 H -0.194 1.194 20 N -0.132 5.132 21 H 0.061 0.939 22 H 0.093 0.907 23 H 0.110 0.890 24 H 0.130 0.870 25 H 0.085 0.915 26 H 0.082 0.918 27 H 0.126 0.874 28 H 0.107 0.893 29 H 0.121 0.879 30 H 0.200 0.800 31 H 0.027 0.973 32 H 0.048 0.952 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 8.641 -3.395 -12.916 15.906 hybrid contribution -0.946 -0.172 -0.027 0.962 sum 7.694 -3.567 -12.943 15.474 Atomic orbital electron populations 1.22400 0.93037 1.02636 1.04676 1.21796 0.95840 0.96369 0.83561 0.89474 1.21973 0.97047 1.01209 0.95607 1.21676 0.94706 0.99290 0.99900 1.20332 0.98972 0.99702 0.88522 1.21733 0.95754 0.99108 0.99100 1.22226 1.02418 1.05724 0.90549 1.70394 1.09562 1.12496 1.34770 1.23683 0.98612 1.00304 0.80978 1.17551 0.87826 0.92241 0.95282 1.20940 0.91373 0.98675 1.43528 0.93999 1.25701 1.02260 0.95815 0.94549 1.70043 1.28329 1.13710 1.44131 0.85490 0.79309 0.78736 0.78094 1.19750 1.20477 1.19390 1.45671 1.25712 1.33478 1.08304 0.93863 0.90686 0.89039 0.87032 0.91543 0.91792 0.87443 0.89294 0.87928 0.80033 0.97271 0.95236 0.92339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.12 8.21 71.98 0.59 -5.53 16 2 C 0.13 4.05 3.48 45.09 0.16 4.20 16 3 H 0.09 2.65 8.14 -2.38 -0.02 2.63 16 4 C -0.12 -2.64 5.22 30.73 0.16 -2.48 16 5 C -0.12 -2.16 5.96 30.80 0.18 -1.97 16 6 C -0.04 -0.82 6.31 30.02 0.19 -0.63 16 7 C -0.04 -1.49 6.57 40.69 0.27 -1.22 16 8 C -0.06 -2.52 11.83 83.28 0.99 -1.54 16 9 N -0.55 -27.96 11.27 -188.83 -2.13 -30.08 16 10 C 0.23 11.35 6.89 138.25 0.95 12.31 16 11 C 0.11 6.05 4.59 29.10 0.13 6.19 16 12 C -0.51 -28.91 6.94 25.60 0.18 -28.74 16 13 H 0.04 2.47 7.74 -2.91 -0.02 2.45 16 14 C 0.02 0.89 5.46 84.66 0.46 1.35 16 15 N -0.92 -54.10 13.29 21.45 0.28 -53.81 16 16 Si 0.96 44.24 29.54 68.60 2.03 46.27 16 17 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 18 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 19 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 20 N -0.45 -18.03 2.98 -477.88 -1.43 -19.46 16 21 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 22 H 0.07 3.39 3.76 -2.39 -0.01 3.38 16 23 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 24 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 25 H 0.07 1.56 8.09 -2.39 -0.02 1.54 16 26 H 0.06 1.22 8.12 -2.39 -0.02 1.20 16 27 H 0.11 1.26 8.14 -2.38 -0.02 1.24 16 28 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.18 5.95 8.06 -2.91 -0.02 5.93 16 31 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.03 1.63 6.53 -2.39 -0.02 1.61 16 33 H 0.27 14.67 8.31 -92.71 -0.77 13.90 16 Total: -1.00 -70.14 265.60 4.10 -66.04 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: 1.09 Total: 9.12 kcal Atomic # 6 Polarization: -22.33 SS G_CDS: 4.26 Total: -18.07 kcal Atomic # 7 Polarization: -100.08 SS G_CDS: -3.27 Total: -103.35 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Total: -70.14 4.10 -66.04 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260668981.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.303 kcal (2) G-P(sol) polarization free energy of solvation -70.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds