Wall clock time and date at job start Mon Mar 30 2020 02:57:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.59773 * 2 1 4 4 C 1.53278 * 109.59984 * 120.31396 * 2 1 3 5 5 C 1.53116 * 109.70737 * 170.68790 * 4 2 1 6 6 C 1.53493 * 109.30775 * 290.09568 * 5 4 2 7 7 C 1.50711 * 108.06260 * 48.70706 * 6 5 4 8 8 C 1.33857 * 128.68441 * 163.95279 * 7 6 5 9 9 N 1.34418 * 107.79894 * 179.97438 * 8 7 6 10 10 C 1.30790 * 109.32111 * 0.41248 * 9 8 7 11 11 C 1.50701 * 125.72268 * 179.64482 * 10 9 8 12 12 C 1.50700 * 109.46896 * 87.98996 * 11 10 9 13 13 H 1.08000 * 120.00366 * 359.97438 * 12 11 10 14 14 C 1.37879 * 120.00158 * 179.97438 * 12 11 10 15 15 N 1.31518 * 119.99739 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 120.00257 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47009 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.46737 * 119.99830 * 16 14 12 19 19 H 1.48500 * 109.47012 * 239.99758 * 16 14 12 20 20 N 1.34405 * 108.54931 * 359.68559 * 10 9 8 21 21 H 1.08999 * 109.46904 * 291.85310 * 1 2 3 22 22 H 1.09005 * 109.47371 * 51.85539 * 1 2 3 23 23 H 1.09002 * 109.47110 * 171.84909 * 1 2 3 24 24 H 1.09006 * 109.43133 * 50.61813 * 4 2 1 25 25 H 1.08997 * 109.39854 * 290.73965 * 4 2 1 26 26 H 1.09004 * 109.49940 * 170.14597 * 5 4 2 27 27 H 1.08996 * 109.50001 * 50.04128 * 5 4 2 28 28 H 1.09006 * 109.74584 * 289.06645 * 6 5 4 29 29 H 1.09007 * 109.74571 * 168.35198 * 6 5 4 30 30 H 1.08004 * 126.09709 * 0.07062 * 8 7 6 31 31 H 1.08999 * 109.47242 * 207.98835 * 11 10 9 32 32 H 1.08999 * 109.47283 * 327.98807 * 11 10 9 33 33 H 0.96999 * 119.99980 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8956 1.0268 0.0000 4 6 2.0442 -0.7288 1.2465 5 6 3.5575 -0.9348 1.1368 6 6 3.8505 -1.9719 0.0438 7 6 3.0668 -1.5895 -1.1854 8 6 3.2261 -2.0142 -2.4448 9 7 2.3001 -1.4038 -3.2044 10 6 1.5806 -0.6095 -2.4548 11 6 0.4443 0.2587 -2.9303 12 6 -0.8404 -0.5280 -2.8887 13 1 -0.8346 -1.5542 -2.5521 14 6 -2.0233 0.0622 -3.2805 15 7 -2.0305 1.3120 -3.6900 16 14 -3.6156 -0.9132 -3.2296 17 1 -3.3395 -2.2860 -2.7354 18 1 -4.5778 -0.2427 -2.3187 19 1 -4.1951 -0.9863 -4.5949 20 7 2.0252 -0.6969 -1.1894 21 1 -0.3633 0.3825 0.9538 22 1 -0.3634 0.6348 -0.8082 23 1 -0.3633 -1.0173 -0.1457 24 1 1.5514 -1.6976 1.3293 25 1 1.8227 -0.1326 2.1317 26 1 3.9462 -1.2917 2.0906 27 1 4.0356 0.0102 0.8791 28 1 3.5436 -2.9613 0.3831 29 1 4.9163 -1.9747 -0.1850 30 1 3.9655 -2.7222 -2.7889 31 1 0.3574 1.1307 -2.2821 32 1 0.6384 0.5837 -3.9524 33 1 -2.8627 1.7274 -3.9652 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260669000.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:06 Heat of formation + Delta-G solvation = 39.533415 kcal Electronic energy + Delta-G solvation = -15323.310189 eV Core-core repulsion = 12963.108378 eV Total energy + Delta-G solvation = -2360.201812 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.61694 -36.55940 -34.03153 -32.66736 -30.31380 -29.46086 -27.81121 -25.34503 -23.08848 -22.38641 -21.47810 -19.56388 -18.31666 -16.38261 -16.04852 -14.91174 -14.47139 -14.34631 -13.95460 -13.70413 -13.47132 -12.65053 -12.45632 -12.20144 -12.02397 -11.70650 -11.30335 -11.00025 -10.93711 -10.82753 -10.78677 -10.68686 -9.97854 -9.88405 -9.43680 -8.98504 -8.71265 -8.46907 -7.33081 -6.08083 -4.10579 2.85754 3.27778 3.36339 3.41325 3.53890 4.05199 4.44226 4.73086 4.83925 4.88374 5.20132 5.26663 5.43831 5.54470 5.62634 5.68440 5.80970 5.82828 5.91529 5.95873 6.13857 6.24074 6.31455 6.41888 6.52745 6.96750 7.23099 7.33493 7.50318 7.66037 7.87816 8.06795 8.30823 8.91365 9.10987 9.52033 11.01409 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.037082 B = 0.009159 C = 0.008249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.908693 B = 3056.343658 C = 3393.611090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.137 3.863 3 H 0.079 0.921 4 C -0.128 4.128 5 C -0.123 4.123 6 C -0.036 4.036 7 C -0.066 4.066 8 C -0.029 4.029 9 N -0.514 5.514 10 C 0.268 3.732 11 C 0.093 3.907 12 C -0.501 4.501 13 H 0.057 0.943 14 C 0.060 3.940 15 N -0.893 5.893 16 Si 0.894 3.106 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.282 1.282 20 N -0.451 5.451 21 H 0.058 0.942 22 H 0.105 0.895 23 H 0.065 0.935 24 H 0.071 0.929 25 H 0.079 0.921 26 H 0.068 0.932 27 H 0.064 0.936 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.155 0.845 31 H 0.036 0.964 32 H 0.048 0.952 33 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.088 -2.553 11.026 13.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.034 3.966 3 H 0.097 0.903 4 C -0.165 4.165 5 C -0.161 4.161 6 C -0.075 4.075 7 C -0.179 4.179 8 C -0.177 4.177 9 N -0.232 5.232 10 C 0.005 3.995 11 C 0.054 3.946 12 C -0.540 4.540 13 H 0.075 0.925 14 C -0.141 4.141 15 N -0.532 5.532 16 Si 0.722 3.278 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.208 1.208 20 N -0.134 5.134 21 H 0.077 0.923 22 H 0.123 0.877 23 H 0.084 0.916 24 H 0.090 0.910 25 H 0.097 0.903 26 H 0.087 0.913 27 H 0.083 0.917 28 H 0.089 0.911 29 H 0.095 0.905 30 H 0.173 0.827 31 H 0.054 0.946 32 H 0.066 0.934 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.814 -2.448 10.235 13.107 hybrid contribution -0.762 -0.468 0.830 1.220 sum 7.052 -2.915 11.065 13.441 Atomic orbital electron populations 1.22426 0.91640 1.05074 1.03480 1.21423 0.96696 0.95435 0.83059 0.90263 1.21942 0.96107 1.01554 0.96931 1.21645 0.95903 0.99719 0.98785 1.20046 0.98412 0.98411 0.90599 1.20822 0.97350 1.02055 0.97670 1.21694 1.01818 1.04539 0.89690 1.70542 1.08132 1.11767 1.32738 1.24316 0.97695 0.98584 0.78856 1.17957 0.86934 0.92042 0.97626 1.20923 0.90729 0.98385 1.43984 0.92504 1.24937 0.99055 0.94977 0.95149 1.69952 1.27253 1.11858 1.44132 0.86484 0.83230 0.80235 0.77839 1.19752 1.20992 1.20824 1.45453 1.25833 1.33529 1.08631 0.92349 0.87672 0.91599 0.91015 0.90288 0.91290 0.91732 0.91062 0.90513 0.82742 0.94578 0.93363 0.92779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.02 7.93 37.16 0.29 -2.72 16 2 C 0.14 2.27 3.45 -67.80 -0.23 2.04 16 3 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 4 C -0.13 -1.63 5.22 -26.53 -0.14 -1.77 16 5 C -0.12 -1.42 5.96 -26.42 -0.16 -1.58 16 6 C -0.04 -0.48 6.31 -27.62 -0.17 -0.65 16 7 C -0.07 -1.20 6.57 -81.73 -0.54 -1.74 16 8 C -0.03 -0.60 11.84 -17.96 -0.21 -0.81 16 9 N -0.51 -12.57 11.27 -11.02 -0.12 -12.70 16 10 C 0.27 6.44 6.88 -155.75 -1.07 5.37 16 11 C 0.09 2.41 4.59 -29.03 -0.13 2.28 16 12 C -0.50 -13.75 7.21 -34.44 -0.25 -14.00 16 13 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 14 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 15 N -0.89 -25.50 13.29 55.43 0.74 -24.77 16 16 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 17 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 18 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 20 N -0.45 -9.08 2.99 -102.40 -0.31 -9.39 16 21 H 0.06 0.85 8.13 -51.93 -0.42 0.43 16 22 H 0.10 2.24 4.53 -51.93 -0.24 2.00 16 23 H 0.06 1.29 8.04 -51.93 -0.42 0.87 16 24 H 0.07 0.96 8.09 -51.93 -0.42 0.54 16 25 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.76 8.12 -51.93 -0.42 0.34 16 28 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.08 0.87 8.14 -51.92 -0.42 0.45 16 30 H 0.16 2.62 8.06 -52.48 -0.42 2.20 16 31 H 0.04 0.93 6.28 -51.93 -0.33 0.60 16 32 H 0.05 1.37 8.14 -51.93 -0.42 0.95 16 33 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 265.97 15.07 4.01 4.01 Total: -1.00 -30.82 265.97 -8.16 -38.98 By element: Atomic # 1 Polarization: 4.32 SS G_CDS: -4.74 Total: -0.42 kcal Atomic # 6 Polarization: -9.32 SS G_CDS: -2.71 Total: -12.03 kcal Atomic # 7 Polarization: -47.16 SS G_CDS: 0.31 Total: -46.85 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -30.82 -8.16 -38.98 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260669000.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.512 kcal (2) G-P(sol) polarization free energy of solvation -30.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.979 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds