Wall clock time and date at job start Mon Mar 30 2020 03:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.35837 * 124.88534 * 2 1 4 4 C 1.39429 * 107.96379 * 179.97438 * 3 2 1 5 5 C 1.41305 * 127.02600 * 180.02562 * 4 3 2 6 6 H 1.08008 * 119.99948 * 179.97438 * 5 4 3 7 7 C 1.39556 * 120.00441 * 359.96861 * 5 4 3 8 8 N 1.31121 * 119.99897 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 120.00067 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47427 * 60.00002 * 9 7 5 11 11 H 1.48503 * 109.47118 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47094 * 299.99547 * 9 7 5 13 13 C 1.46808 * 105.94168 * 359.76069 * 4 3 2 14 14 C 1.35243 * 106.59322 * 0.39372 * 13 4 3 15 15 N 1.39047 * 125.36512 * 179.86220 * 14 13 4 16 16 C 1.47848 * 110.99980 * 299.21669 * 15 14 13 17 17 C 1.54901 * 104.79330 * 146.36319 * 16 15 14 18 18 C 1.55136 * 101.65498 * 322.92921 * 17 16 15 19 19 C 1.47447 * 110.99939 * 60.05908 * 15 14 13 20 20 H 1.08998 * 109.47380 * 270.02397 * 1 2 3 21 21 H 1.08995 * 109.47639 * 30.02582 * 1 2 3 22 22 H 1.09008 * 109.47300 * 150.02227 * 1 2 3 23 23 H 1.08005 * 126.01631 * 0.02562 * 3 2 1 24 24 H 0.96998 * 120.00175 * 179.97438 * 8 7 5 25 25 H 1.08000 * 126.70588 * 180.28844 * 13 4 3 26 26 H 1.09004 * 110.37315 * 27.53554 * 16 15 14 27 27 H 1.09001 * 110.37200 * 265.19301 * 16 15 14 28 28 H 1.09009 * 110.99027 * 204.83540 * 17 16 15 29 29 H 1.09001 * 110.99047 * 81.02616 * 17 16 15 30 30 H 1.09003 * 110.70303 * 154.03821 * 18 17 16 31 31 H 1.09002 * 110.71024 * 277.09443 * 18 17 16 32 32 H 1.09000 * 109.88713 * 117.33420 * 19 15 14 33 33 H 1.09003 * 110.02016 * 356.22144 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2418 1.1143 0.0000 4 6 3.5758 0.7084 0.0006 5 6 4.7182 1.5401 0.0013 6 1 5.7053 1.1016 0.0021 7 6 4.5711 2.9278 0.0008 8 7 3.3728 3.4601 0.0002 9 14 6.0814 4.0271 0.0010 10 1 6.8941 3.7521 -1.2110 11 1 5.6577 5.4504 0.0010 12 1 6.8931 3.7528 1.2140 13 6 3.5507 -0.7594 0.0069 14 6 2.2482 -1.1234 0.0006 15 7 1.7783 -2.4321 0.0008 16 6 2.2398 -3.1609 -1.2000 17 6 2.4418 -4.6208 -0.7232 18 6 3.0018 -4.4085 0.7079 19 6 2.2399 -3.1591 1.1976 20 1 -0.3634 0.0004 1.0276 21 1 -0.3634 0.8897 -0.5142 22 1 -0.3634 -0.8902 -0.5135 23 1 1.8885 2.1349 0.0004 24 1 3.2706 4.4247 0.0002 25 1 4.4053 -1.4196 0.0133 26 1 3.1816 -2.7448 -1.5578 27 1 1.4833 -3.1188 -1.9835 28 1 3.1646 -5.1406 -1.3523 29 1 1.4934 -5.1574 -0.6958 30 1 2.7792 -5.2681 1.3402 31 1 4.0752 -4.2216 0.6780 32 1 1.3841 -3.4598 1.8019 33 1 2.9047 -2.5261 1.7854 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260687098.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:44 Heat of formation + Delta-G solvation = 34.171951 kcal Electronic energy + Delta-G solvation = -14977.684656 eV Core-core repulsion = 12617.250354 eV Total energy + Delta-G solvation = -2360.434302 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.44370 -39.02753 -35.45133 -32.99433 -32.34899 -29.82003 -28.80520 -27.12652 -25.62040 -22.70521 -21.96030 -21.14632 -19.85390 -18.82360 -17.29948 -16.67967 -16.54878 -15.65418 -15.50537 -14.77150 -14.41372 -14.26270 -14.00684 -13.58272 -13.22460 -13.02054 -13.01105 -12.63979 -12.57141 -12.48051 -12.11160 -12.03245 -11.75176 -11.56841 -11.51127 -11.06148 -9.46336 -9.06074 -8.39451 -8.30729 -5.99906 1.39861 1.40548 1.52572 1.75613 2.31886 2.35883 2.43535 3.36870 3.62671 3.81833 3.86849 4.14549 4.30850 4.44111 4.58184 4.62173 4.74030 4.75266 4.93271 4.98122 5.00513 5.04340 5.10814 5.20709 5.36292 5.39360 5.54619 5.64106 6.00494 6.07239 6.37552 6.59427 7.01923 7.22543 7.36104 7.42774 8.68017 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.040845 B = 0.007750 C = 0.006880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.350532 B = 3612.006465 C = 4068.997990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.453 5.453 3 C -0.122 4.122 4 C -0.022 4.022 5 C -0.469 4.469 6 H 0.057 0.943 7 C 0.012 3.988 8 N -0.867 5.867 9 Si 0.985 3.015 10 H -0.267 1.267 11 H -0.270 1.270 12 H -0.267 1.267 13 C -0.302 4.302 14 C 0.175 3.825 15 N -0.479 5.479 16 C 0.047 3.953 17 C -0.114 4.114 18 C -0.133 4.133 19 C 0.049 3.951 20 H 0.062 0.938 21 H 0.075 0.925 22 H 0.087 0.913 23 H 0.172 0.828 24 H 0.275 0.725 25 H 0.105 0.895 26 H 0.031 0.969 27 H 0.080 0.920 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.101 0.899 31 H 0.059 0.941 32 H 0.087 0.913 33 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.185 -11.369 -0.151 12.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.134 5.134 3 C -0.249 4.249 4 C -0.028 4.028 5 C -0.503 4.503 6 H 0.075 0.925 7 C -0.194 4.194 8 N -0.499 5.499 9 Si 0.808 3.192 10 H -0.192 1.192 11 H -0.194 1.194 12 H -0.192 1.192 13 C -0.333 4.333 14 C -0.031 4.031 15 N -0.202 5.202 16 C -0.080 4.080 17 C -0.152 4.152 18 C -0.171 4.171 19 C -0.078 4.078 20 H 0.081 0.919 21 H 0.094 0.906 22 H 0.105 0.895 23 H 0.189 0.811 24 H 0.086 0.914 25 H 0.123 0.877 26 H 0.050 0.950 27 H 0.098 0.902 28 H 0.110 0.890 29 H 0.110 0.890 30 H 0.120 0.880 31 H 0.078 0.922 32 H 0.105 0.895 33 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -5.208 -11.079 -0.147 12.243 hybrid contribution 1.558 0.925 0.046 1.812 sum -3.650 -10.154 -0.101 10.791 Atomic orbital electron populations 1.21782 0.77607 1.03526 1.02365 1.43726 1.06183 1.04701 1.58756 1.23160 0.90172 0.89813 1.21759 1.18735 0.92880 0.90858 1.00277 1.18972 0.92726 0.91593 1.47014 0.92480 1.26463 0.99987 0.99398 0.93523 1.69618 1.24167 1.12561 1.43585 0.85198 0.77932 0.76798 0.79270 1.19167 1.19449 1.19199 1.21880 0.94545 0.95190 1.21695 1.18111 0.87900 0.85163 1.11898 1.59914 1.58686 0.97766 1.03833 1.23158 0.98680 0.94088 0.92050 1.22676 1.02557 0.94188 0.95730 1.22741 0.99278 0.97523 0.97557 1.22897 0.98699 0.94561 0.91611 0.91898 0.90643 0.89460 0.81120 0.91434 0.87695 0.95037 0.90182 0.89049 0.88983 0.88007 0.92246 0.89501 0.94768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.20 10.96 127.77 1.40 4.60 16 2 N -0.45 -21.75 3.13 -541.22 -1.69 -23.44 16 3 C -0.12 -6.90 10.41 84.36 0.88 -6.02 16 4 C -0.02 -1.30 6.11 -20.00 -0.12 -1.43 16 5 C -0.47 -28.43 9.43 23.34 0.22 -28.20 16 6 H 0.06 3.37 7.84 -2.91 -0.02 3.35 16 7 C 0.01 0.68 5.49 85.12 0.47 1.15 16 8 N -0.87 -49.41 10.37 21.77 0.23 -49.19 16 9 Si 0.99 43.07 29.56 68.60 2.03 45.10 16 10 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 11 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 12 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 13 C -0.30 -16.04 9.38 23.82 0.22 -15.82 16 14 C 0.17 8.14 5.44 130.73 0.71 8.85 16 15 N -0.48 -17.46 4.98 -691.27 -3.44 -20.90 16 16 C 0.05 1.46 6.62 86.77 0.57 2.04 16 17 C -0.11 -2.48 7.08 31.98 0.23 -2.26 16 18 C -0.13 -3.13 6.94 31.77 0.22 -2.91 16 19 C 0.05 1.54 6.68 86.64 0.58 2.12 16 20 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 21 H 0.07 2.53 8.13 -2.39 -0.02 2.51 16 22 H 0.09 2.78 8.00 -2.38 -0.02 2.76 16 23 H 0.17 10.09 5.77 -2.91 -0.02 10.08 16 24 H 0.28 14.37 8.30 -92.71 -0.77 13.60 16 25 H 0.10 5.36 8.06 -2.91 -0.02 5.34 16 26 H 0.03 1.14 7.15 -2.39 -0.02 1.12 16 27 H 0.08 2.33 8.14 -2.39 -0.02 2.32 16 28 H 0.09 1.67 8.14 -2.38 -0.02 1.65 16 29 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 33 H 0.03 1.27 7.16 -2.39 -0.02 1.25 16 Total: -1.00 -68.26 271.30 3.57 -64.69 By element: Atomic # 1 Polarization: 20.56 SS G_CDS: 1.08 Total: 21.64 kcal Atomic # 6 Polarization: -43.27 SS G_CDS: 5.38 Total: -37.89 kcal Atomic # 7 Polarization: -88.62 SS G_CDS: -4.91 Total: -93.53 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -68.26 3.57 -64.69 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260687098.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.860 kcal (2) G-P(sol) polarization free energy of solvation -68.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds