Wall clock time and date at job start Mon Mar 30 2020 03:13:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36327 * 125.63318 * 2 1 4 4 C 1.34888 * 108.21946 * 179.97438 * 3 2 1 5 5 C 1.40860 * 107.41326 * 0.02562 * 4 3 2 6 6 C 1.34874 * 107.42081 * 0.02562 * 5 4 3 7 7 C 1.51194 * 109.39411 * 180.02562 * 5 4 3 8 8 C 1.50696 * 110.28683 * 258.29152 * 7 5 4 9 9 H 1.07995 * 120.00156 * 121.05929 * 8 7 5 10 10 C 1.37877 * 119.99901 * 300.78991 * 8 7 5 11 11 N 1.31518 * 120.00030 * 355.27931 * 10 8 7 12 12 Si 1.86795 * 120.00154 * 175.28552 * 10 8 7 13 13 H 1.48501 * 109.46943 * 359.97438 * 12 10 8 14 14 H 1.48497 * 109.47557 * 119.99618 * 12 10 8 15 15 H 1.48499 * 109.47146 * 239.99904 * 12 10 8 16 16 C 1.53003 * 110.36134 * 136.23080 * 7 5 4 17 17 N 1.46897 * 109.47010 * 186.32260 * 16 7 5 18 18 C 1.54346 * 105.27100 * 17.24372 * 7 5 4 19 19 C 1.51193 * 143.19006 * 180.02562 * 4 3 2 20 20 H 1.09001 * 109.47345 * 90.02660 * 1 2 3 21 21 H 1.09000 * 109.46885 * 210.01993 * 1 2 3 22 22 H 1.08993 * 109.47204 * 330.02268 * 1 2 3 23 23 H 1.08002 * 125.89570 * 0.02562 * 3 2 1 24 24 H 1.07997 * 125.89746 * 179.97438 * 6 5 4 25 25 H 0.96999 * 120.00179 * 180.02562 * 11 10 8 26 26 H 1.09003 * 109.47189 * 306.31625 * 16 7 5 27 27 H 1.08998 * 109.47336 * 66.32373 * 16 7 5 28 28 H 1.00896 * 111.00357 * 174.91485 * 17 16 7 29 29 H 1.00902 * 110.99924 * 298.87120 * 17 16 7 30 30 H 1.08997 * 110.74774 * 91.70418 * 18 7 5 31 31 H 1.08994 * 110.74228 * 214.86634 * 18 7 5 32 32 H 1.09001 * 110.28440 * 43.78180 * 19 4 3 33 33 H 1.09003 * 110.35965 * 281.71885 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2592 1.1080 0.0000 4 6 3.5463 0.7043 0.0006 5 6 3.5463 -0.7043 0.0003 6 6 2.2594 -1.1081 -0.0009 7 6 4.9724 -1.2063 0.0016 8 6 5.3713 -1.6502 -1.3822 9 1 6.2130 -1.1875 -1.8760 10 6 4.6652 -2.6508 -2.0155 11 7 3.7033 -3.2817 -1.3779 12 14 5.0748 -3.1106 -3.7790 13 1 6.1881 -2.2577 -4.2671 14 1 5.4818 -4.5375 -3.8369 15 1 3.8797 -2.9017 -4.6354 16 6 5.1297 -2.3604 0.9938 17 7 6.5474 -2.7324 1.0915 18 6 5.8277 -0.0001 0.4440 19 6 4.9724 1.2064 0.0014 20 1 -0.3634 -0.0005 -1.0277 21 1 -0.3633 -0.8898 0.5141 22 1 -0.3633 0.8901 0.5134 23 1 1.9171 2.1324 0.0004 24 1 1.9171 -2.1323 -0.0018 25 1 3.2068 -3.9859 -1.8233 26 1 4.7675 -2.0490 1.9737 27 1 4.5520 -3.2177 0.6485 28 1 6.6887 -3.4357 1.8010 29 1 6.9021 -3.0425 0.1992 30 1 5.9655 -0.0002 1.5252 31 1 6.7907 -0.0017 -0.0665 32 1 5.0834 2.0281 0.7090 33 1 5.2617 1.5283 -0.9991 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260726501.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:25 Heat of formation + Delta-G solvation = 41.508245 kcal Electronic energy + Delta-G solvation = -15544.940592 eV Core-core repulsion = 13184.824416 eV Total energy + Delta-G solvation = -2360.116176 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.96907 -38.15412 -34.72786 -33.73308 -31.67841 -30.14479 -27.92366 -26.43984 -26.08267 -23.50165 -21.49254 -20.02489 -19.63948 -17.99758 -16.93917 -16.40678 -15.98973 -15.84878 -15.09773 -14.95243 -14.43799 -14.34704 -14.05203 -13.27590 -13.07594 -12.99251 -12.88086 -12.65808 -12.40881 -12.24161 -11.84959 -11.64682 -11.39605 -10.89558 -10.81888 -10.30429 -9.16110 -8.63968 -8.46519 -7.85266 -5.99614 1.39042 1.44302 1.52834 1.74112 2.45654 2.47939 2.65045 3.35070 4.01500 4.24615 4.37938 4.49679 4.53118 4.65438 4.69188 4.72943 4.83974 4.97958 5.09453 5.21090 5.32558 5.48623 5.59043 5.65069 5.84163 5.90350 6.13766 6.19737 6.57621 6.60615 6.72890 6.83764 6.96239 7.04382 7.16194 7.62831 9.08901 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.022895 B = 0.013621 C = 0.010930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.698236 B = 2055.166218 C = 2561.101703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.467 5.467 3 C -0.017 4.017 4 C -0.239 4.239 5 C -0.135 4.135 6 C -0.015 4.015 7 C 0.131 3.869 8 C -0.495 4.495 9 H 0.041 0.959 10 C 0.030 3.970 11 N -0.890 5.890 12 Si 0.933 3.067 13 H -0.275 1.275 14 H -0.284 1.284 15 H -0.294 1.294 16 C 0.085 3.915 17 N -0.841 5.841 18 C -0.086 4.086 19 C -0.027 4.027 20 H 0.068 0.932 21 H 0.083 0.917 22 H 0.104 0.896 23 H 0.182 0.818 24 H 0.142 0.858 25 H 0.251 0.749 26 H 0.019 0.981 27 H 0.032 0.968 28 H 0.327 0.673 29 H 0.338 0.662 30 H 0.047 0.953 31 H 0.052 0.948 32 H 0.066 0.934 33 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.672 5.141 3.319 7.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.145 5.145 3 C -0.145 4.145 4 C -0.247 4.247 5 C -0.142 4.142 6 C -0.143 4.143 7 C 0.130 3.870 8 C -0.533 4.533 9 H 0.059 0.941 10 C -0.169 4.169 11 N -0.529 5.529 12 Si 0.761 3.239 13 H -0.200 1.200 14 H -0.210 1.210 15 H -0.220 1.220 16 C -0.046 4.046 17 N -0.368 5.368 18 C -0.124 4.124 19 C -0.065 4.065 20 H 0.086 0.914 21 H 0.102 0.898 22 H 0.122 0.878 23 H 0.199 0.801 24 H 0.160 0.840 25 H 0.061 0.939 26 H 0.038 0.962 27 H 0.050 0.950 28 H 0.137 0.863 29 H 0.150 0.850 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.085 5.746 3.492 8.430 hybrid contribution -0.300 -1.642 -1.528 2.263 sum -5.385 4.103 1.963 7.049 Atomic orbital electron populations 1.22062 0.75689 1.05092 1.03222 1.44097 1.06887 1.04992 1.58537 1.20982 0.88874 0.91869 1.12816 1.20756 0.94825 0.96746 1.12391 1.20629 0.94909 0.94448 1.04175 1.20870 0.90247 0.90407 1.12735 1.17208 0.86589 0.90501 0.92691 1.21224 1.13091 1.17917 1.01076 0.94050 1.25388 0.95411 0.96515 0.99635 1.70013 1.22851 1.23609 1.36404 0.85905 0.77452 0.77626 0.82891 1.19961 1.20997 1.22048 1.21627 0.87807 0.99666 0.95513 1.58759 1.18852 1.47517 1.11710 1.22083 0.97317 0.94609 0.98380 1.20232 0.89377 0.97253 0.99622 0.91358 0.89796 0.87790 0.80136 0.84011 0.93933 0.96224 0.94985 0.86287 0.85001 0.93392 0.92948 0.91503 0.93008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.00 11.12 127.77 1.42 3.42 16 2 N -0.47 -17.58 3.15 -547.87 -1.72 -19.31 16 3 C -0.02 -0.63 11.43 83.22 0.95 0.33 16 4 C -0.24 -10.62 6.91 -19.84 -0.14 -10.76 16 5 C -0.13 -6.67 4.78 -19.84 -0.09 -6.77 16 6 C -0.02 -0.71 10.53 83.22 0.88 0.17 16 7 C 0.13 6.55 0.36 -53.06 -0.02 6.53 16 8 C -0.49 -26.69 7.14 25.60 0.18 -26.51 16 9 H 0.04 2.29 7.57 -2.91 -0.02 2.27 16 10 C 0.03 1.62 5.17 84.65 0.44 2.06 16 11 N -0.89 -48.38 9.32 21.45 0.20 -48.18 16 12 Si 0.93 43.85 29.54 68.60 2.03 45.88 16 13 H -0.27 -12.84 7.11 99.48 0.71 -12.13 16 14 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 15 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 16 C 0.09 4.10 5.53 86.30 0.48 4.58 16 17 N -0.84 -35.50 9.14 -186.72 -1.71 -37.21 16 18 C -0.09 -3.86 5.64 31.52 0.18 -3.68 16 19 C -0.03 -1.12 6.75 30.47 0.21 -0.91 16 20 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 21 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 22 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 23 H 0.18 5.21 8.06 -2.91 -0.02 5.19 16 24 H 0.14 6.94 7.47 -2.91 -0.02 6.92 16 25 H 0.25 13.28 8.31 -92.71 -0.77 12.51 16 26 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.03 1.71 6.11 -2.39 -0.01 1.70 16 28 H 0.33 11.90 9.08 -89.70 -0.81 11.09 16 29 H 0.34 14.92 8.23 -89.69 -0.74 14.18 16 30 H 0.05 2.07 7.91 -2.39 -0.02 2.06 16 31 H 0.05 2.35 7.73 -2.39 -0.02 2.33 16 32 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 33 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 Total: -1.00 -61.96 267.13 2.84 -59.13 By element: Atomic # 1 Polarization: 31.66 SS G_CDS: -0.44 Total: 31.23 kcal Atomic # 6 Polarization: -36.02 SS G_CDS: 4.48 Total: -31.55 kcal Atomic # 7 Polarization: -101.46 SS G_CDS: -3.23 Total: -104.69 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -61.96 2.84 -59.13 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260726501.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.634 kcal (2) G-P(sol) polarization free energy of solvation -61.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds