Wall clock time and date at job start Mon Mar 30 2020 02:59:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08992 * 109.49989 * 2 1 4 4 C 1.53115 * 109.49668 * 239.93580 * 2 1 3 5 5 C 1.53278 * 109.70664 * 170.09851 * 4 2 1 6 6 N 1.46470 * 108.69056 * 50.76601 * 5 4 2 7 7 C 1.37190 * 124.32920 * 342.95842 * 6 5 4 8 8 C 1.33860 * 107.10144 * 180.09292 * 7 6 5 9 9 N 1.34435 * 107.79473 * 359.79988 * 8 7 6 10 10 C 1.30780 * 109.31940 * 359.97438 * 9 8 7 11 11 C 1.50703 * 125.71976 * 179.97438 * 10 9 8 12 12 C 1.50708 * 109.46925 * 90.02834 * 11 10 9 13 13 H 1.07991 * 119.99789 * 0.02562 * 12 11 10 14 14 C 1.37877 * 120.00008 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00089 * 180.02562 * 14 12 11 16 16 Si 1.86798 * 119.99938 * 0.02562 * 14 12 11 17 17 H 1.48506 * 109.47297 * 269.99556 * 16 14 12 18 18 H 1.48503 * 109.47261 * 149.99737 * 16 14 12 19 19 H 1.48500 * 109.47454 * 29.99730 * 16 14 12 20 20 C 1.50711 * 124.21598 * 359.77338 * 7 6 5 21 21 H 1.09000 * 109.47453 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.47092 * 300.06066 * 1 2 3 23 23 H 1.09001 * 109.47267 * 60.06654 * 1 2 3 24 24 H 1.09010 * 109.43311 * 50.02538 * 4 2 1 25 25 H 1.09006 * 109.39925 * 290.14944 * 4 2 1 26 26 H 1.09000 * 109.60401 * 291.00246 * 5 4 2 27 27 H 1.09003 * 109.60556 * 170.52540 * 5 4 2 28 28 H 1.07997 * 126.10169 * 179.81867 * 8 7 6 29 29 H 1.08994 * 109.47874 * 330.03015 * 11 10 9 30 30 H 1.09000 * 109.47408 * 210.02840 * 11 10 9 31 31 H 0.96997 * 119.99848 * 180.02562 * 15 14 12 32 32 H 1.09003 * 109.74577 * 104.25754 * 20 7 6 33 33 H 1.09005 * 109.74309 * 224.96985 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0410 -0.7231 -1.2492 5 6 3.5535 -0.5147 -1.3846 6 7 4.1899 -0.8534 -0.1095 7 6 3.5227 -0.9578 1.0846 8 6 4.4297 -1.2774 2.0157 9 7 5.6256 -1.3719 1.4090 10 6 5.4845 -1.1212 0.1332 11 6 6.5893 -1.1254 -0.8917 12 6 6.7243 -2.5066 -1.4793 13 1 6.0747 -3.3017 -1.1444 14 6 7.6763 -2.7549 -2.4452 15 7 7.7937 -3.9601 -2.9583 16 14 8.7994 -1.3795 -3.0250 17 1 8.1727 -0.6806 -4.1758 18 1 10.1051 -1.9498 -3.4437 19 1 9.0133 -0.4145 -1.9167 20 6 2.0416 -0.7335 1.2502 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5148 0.8894 23 1 -0.3634 0.5128 -0.8906 24 1 1.5395 -0.3230 -2.1305 25 1 1.8280 -1.7887 -1.1633 26 1 3.7586 0.5272 -1.6303 27 1 3.9429 -1.1616 -2.1707 28 1 4.2353 -1.4321 3.0667 29 1 7.5275 -0.8397 -0.4160 30 1 6.3528 -0.4151 -1.6840 31 1 8.4638 -4.1349 -3.6375 32 1 1.5340 -1.6918 1.3607 33 1 1.8588 -0.1158 2.1295 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260732391.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:50 Heat of formation + Delta-G solvation = 37.752440 kcal Electronic energy + Delta-G solvation = -14948.582910 eV Core-core repulsion = 12588.303869 eV Total energy + Delta-G solvation = -2360.279040 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.65664 -37.03005 -33.51427 -32.84828 -30.98923 -29.46269 -28.19372 -25.41353 -23.51720 -22.67270 -20.66561 -19.76176 -18.47243 -16.89054 -16.07602 -15.31472 -14.62643 -14.35919 -14.02525 -13.64120 -13.52095 -12.96103 -12.71755 -12.40437 -12.35856 -12.02661 -11.75406 -11.53904 -10.89974 -10.76257 -10.72199 -10.60035 -10.44975 -10.04026 -9.43713 -9.09224 -8.80766 -8.62574 -7.40223 -6.10815 -4.10825 2.76270 3.24987 3.34362 3.38151 3.46413 3.95816 4.37776 4.62278 4.66687 4.72370 5.06463 5.19867 5.31257 5.43282 5.50287 5.54274 5.57305 5.64263 5.78496 5.86437 5.88307 5.97796 6.01741 6.11292 6.27990 6.33435 6.80183 7.01987 7.17357 7.49904 7.57381 7.98976 8.46049 8.93393 8.97826 9.47460 11.02064 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.039421 B = 0.007882 C = 0.007232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.112129 B = 3551.351611 C = 3870.960116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.096 4.096 3 H 0.072 0.928 4 C -0.127 4.127 5 C 0.104 3.896 6 N -0.453 5.453 7 C -0.060 4.060 8 C -0.027 4.027 9 N -0.508 5.508 10 C 0.271 3.729 11 C 0.062 3.938 12 C -0.513 4.513 13 H 0.073 0.927 14 C 0.073 3.927 15 N -0.896 5.896 16 Si 0.876 3.124 17 H -0.276 1.276 18 H -0.284 1.284 19 H -0.262 1.262 20 C -0.031 4.031 21 H 0.056 0.944 22 H 0.056 0.944 23 H 0.055 0.945 24 H 0.081 0.919 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.100 0.900 28 H 0.158 0.842 29 H 0.050 0.950 30 H 0.026 0.974 31 H 0.265 0.735 32 H 0.075 0.925 33 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.553 9.337 3.332 16.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.115 4.115 3 H 0.091 0.909 4 C -0.164 4.164 5 C -0.018 4.018 6 N -0.136 5.136 7 C -0.173 4.173 8 C -0.175 4.175 9 N -0.226 5.226 10 C 0.008 3.992 11 C 0.023 3.977 12 C -0.552 4.552 13 H 0.091 0.909 14 C -0.130 4.130 15 N -0.534 5.534 16 Si 0.702 3.298 17 H -0.202 1.202 18 H -0.209 1.209 19 H -0.187 1.187 20 C -0.070 4.070 21 H 0.075 0.925 22 H 0.075 0.925 23 H 0.074 0.926 24 H 0.100 0.900 25 H 0.092 0.908 26 H 0.094 0.906 27 H 0.119 0.881 28 H 0.175 0.825 29 H 0.068 0.932 30 H 0.044 0.956 31 H 0.075 0.925 32 H 0.093 0.907 33 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -12.763 9.072 3.453 16.035 hybrid contribution -0.111 0.671 -0.779 1.034 sum -12.873 9.743 2.674 16.365 Atomic orbital electron populations 1.21808 0.94630 1.01998 1.01703 1.21293 0.95786 0.99667 0.94772 0.90915 1.21932 0.93903 1.02026 0.98584 1.21882 0.92982 1.01735 0.85237 1.45232 1.08225 1.52555 1.07618 1.20844 0.95359 1.14361 0.86740 1.21706 0.89120 1.07823 0.98880 1.70516 1.25127 1.22459 1.04546 1.23707 0.84084 0.98115 0.93289 1.18250 0.90338 0.98969 0.90125 1.20801 1.19569 0.93674 1.21140 0.90881 1.24933 0.96676 0.95555 0.95794 1.69890 1.34864 1.20390 1.28302 0.86836 0.80737 0.82720 0.79477 1.20160 1.20949 1.18691 1.20168 0.88673 1.00371 0.97739 0.92472 0.92500 0.92625 0.90046 0.90833 0.90636 0.88138 0.82479 0.93169 0.95601 0.92474 0.90698 0.90498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 9.17 37.16 0.34 -0.89 16 2 C -0.10 -1.07 2.76 -90.19 -0.25 -1.32 16 3 H 0.07 0.83 8.12 -51.93 -0.42 0.41 16 4 C -0.13 -1.55 5.21 -26.53 -0.14 -1.69 16 5 C 0.10 1.65 6.60 -3.91 -0.03 1.62 16 6 N -0.45 -8.92 3.13 -109.43 -0.34 -9.26 16 7 C -0.06 -1.07 6.57 -81.73 -0.54 -1.60 16 8 C -0.03 -0.54 11.84 -17.95 -0.21 -0.76 16 9 N -0.51 -12.20 11.27 -11.02 -0.12 -12.33 16 10 C 0.27 6.38 7.13 -155.76 -1.11 5.27 16 11 C 0.06 1.55 4.41 -29.03 -0.13 1.42 16 12 C -0.51 -14.79 9.65 -34.44 -0.33 -15.12 16 13 H 0.07 2.35 7.98 -52.49 -0.42 1.93 16 14 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 15 N -0.90 -27.37 13.96 55.43 0.77 -26.60 16 16 Si 0.88 21.11 27.47 -169.99 -4.67 16.44 16 17 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.26 -6.12 6.54 56.52 0.37 -5.75 16 20 C -0.03 -0.40 5.61 -27.51 -0.15 -0.55 16 21 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 22 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 23 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 24 H 0.08 0.80 8.12 -51.92 -0.42 0.38 16 25 H 0.07 0.97 8.11 -51.93 -0.42 0.55 16 26 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 27 H 0.10 1.73 8.14 -51.93 -0.42 1.30 16 28 H 0.16 2.59 8.06 -52.49 -0.42 2.16 16 29 H 0.05 1.28 7.20 -51.93 -0.37 0.90 16 30 H 0.03 0.59 7.37 -51.93 -0.38 0.21 16 31 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 32 H 0.07 0.90 8.12 -51.93 -0.42 0.48 16 33 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 LS Contribution 271.24 15.07 4.09 4.09 Total: -1.00 -32.86 271.24 -7.91 -40.76 By element: Atomic # 1 Polarization: 3.50 SS G_CDS: -4.99 Total: -1.49 kcal Atomic # 6 Polarization: -8.98 SS G_CDS: -2.64 Total: -11.62 kcal Atomic # 7 Polarization: -48.49 SS G_CDS: 0.31 Total: -48.18 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.67 Total: 16.44 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -32.86 -7.91 -40.76 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260732391.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.516 kcal (2) G-P(sol) polarization free energy of solvation -32.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.764 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds