Wall clock time and date at job start Mon Mar 30 2020 02:59:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08992 * 109.49989 * 2 1 4 4 C 1.53115 * 109.49668 * 239.93580 * 2 1 3 5 5 C 1.53278 * 109.70664 * 170.09851 * 4 2 1 6 6 N 1.46470 * 108.69056 * 50.76601 * 5 4 2 7 7 C 1.37190 * 124.32920 * 342.95842 * 6 5 4 8 8 C 1.33860 * 107.10144 * 180.09292 * 7 6 5 9 9 N 1.34435 * 107.79473 * 359.79988 * 8 7 6 10 10 C 1.30780 * 109.31940 * 359.97438 * 9 8 7 11 11 C 1.50703 * 125.71976 * 179.97438 * 10 9 8 12 12 C 1.50708 * 109.46925 * 90.02834 * 11 10 9 13 13 H 1.07991 * 119.99789 * 0.02562 * 12 11 10 14 14 C 1.37877 * 120.00008 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00089 * 180.02562 * 14 12 11 16 16 Si 1.86798 * 119.99938 * 0.02562 * 14 12 11 17 17 H 1.48506 * 109.47297 * 269.99556 * 16 14 12 18 18 H 1.48503 * 109.47261 * 149.99737 * 16 14 12 19 19 H 1.48500 * 109.47454 * 29.99730 * 16 14 12 20 20 C 1.50711 * 124.21598 * 359.77338 * 7 6 5 21 21 H 1.09000 * 109.47453 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.47092 * 300.06066 * 1 2 3 23 23 H 1.09001 * 109.47267 * 60.06654 * 1 2 3 24 24 H 1.09010 * 109.43311 * 50.02538 * 4 2 1 25 25 H 1.09006 * 109.39925 * 290.14944 * 4 2 1 26 26 H 1.09000 * 109.60401 * 291.00246 * 5 4 2 27 27 H 1.09003 * 109.60556 * 170.52540 * 5 4 2 28 28 H 1.07997 * 126.10169 * 179.81867 * 8 7 6 29 29 H 1.08994 * 109.47874 * 330.03015 * 11 10 9 30 30 H 1.09000 * 109.47408 * 210.02840 * 11 10 9 31 31 H 0.96997 * 119.99848 * 180.02562 * 15 14 12 32 32 H 1.09003 * 109.74577 * 104.25754 * 20 7 6 33 33 H 1.09005 * 109.74309 * 224.96985 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0410 -0.7231 -1.2492 5 6 3.5535 -0.5147 -1.3846 6 7 4.1899 -0.8534 -0.1095 7 6 3.5227 -0.9578 1.0846 8 6 4.4297 -1.2774 2.0157 9 7 5.6256 -1.3719 1.4090 10 6 5.4845 -1.1212 0.1332 11 6 6.5893 -1.1254 -0.8917 12 6 6.7243 -2.5066 -1.4793 13 1 6.0747 -3.3017 -1.1444 14 6 7.6763 -2.7549 -2.4452 15 7 7.7937 -3.9601 -2.9583 16 14 8.7994 -1.3795 -3.0250 17 1 8.1727 -0.6806 -4.1758 18 1 10.1051 -1.9498 -3.4437 19 1 9.0133 -0.4145 -1.9167 20 6 2.0416 -0.7335 1.2502 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5148 0.8894 23 1 -0.3634 0.5128 -0.8906 24 1 1.5395 -0.3230 -2.1305 25 1 1.8280 -1.7887 -1.1633 26 1 3.7586 0.5272 -1.6303 27 1 3.9429 -1.1616 -2.1707 28 1 4.2353 -1.4321 3.0667 29 1 7.5275 -0.8397 -0.4160 30 1 6.3528 -0.4151 -1.6840 31 1 8.4638 -4.1349 -3.6375 32 1 1.5340 -1.6918 1.3607 33 1 1.8588 -0.1158 2.1295 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260732391.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:49 Heat of formation + Delta-G solvation = 17.033808 kcal Electronic energy + Delta-G solvation = -14949.481337 eV Core-core repulsion = 12588.303869 eV Total energy + Delta-G solvation = -2361.177468 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.17970 -38.12943 -35.47202 -34.36493 -32.72732 -30.97646 -29.44374 -26.84216 -24.76915 -24.51591 -21.79651 -21.34400 -19.78851 -19.08761 -17.61977 -16.70016 -16.25308 -15.58541 -15.33058 -15.07212 -14.85513 -14.62053 -14.09894 -13.99036 -13.63964 -13.26910 -13.16255 -12.72414 -12.51301 -12.42091 -11.96094 -11.81517 -11.71104 -11.63547 -11.54865 -10.83483 -10.71882 -10.36663 -8.96851 -8.34318 -6.41954 1.23006 1.34488 1.39386 1.51179 2.03037 2.29179 2.32695 2.99109 3.59440 3.71889 3.74048 3.83356 3.97038 4.26569 4.35701 4.45634 4.55886 4.71064 4.75057 4.81952 4.83186 4.89701 4.91447 4.98124 5.14135 5.21004 5.31859 5.43636 5.47367 5.64732 5.99324 6.14253 6.42581 6.62755 7.20993 7.34383 8.82497 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.039421 B = 0.007882 C = 0.007232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.112129 B = 3551.351611 C = 3870.960116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.091 4.091 3 H 0.076 0.924 4 C -0.121 4.121 5 C 0.093 3.907 6 N -0.452 5.452 7 C -0.037 4.037 8 C -0.061 4.061 9 N -0.546 5.546 10 C 0.226 3.774 11 C 0.073 3.927 12 C -0.522 4.522 13 H 0.017 0.983 14 C 0.014 3.986 15 N -0.945 5.945 16 Si 0.953 3.047 17 H -0.253 1.253 18 H -0.280 1.280 19 H -0.249 1.249 20 C -0.032 4.032 21 H 0.058 0.942 22 H 0.069 0.931 23 H 0.067 0.933 24 H 0.112 0.888 25 H 0.060 0.940 26 H 0.098 0.902 27 H 0.077 0.923 28 H 0.184 0.816 29 H 0.042 0.958 30 H 0.047 0.953 31 H 0.271 0.729 32 H 0.086 0.914 33 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.326 11.830 3.126 19.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.110 4.110 3 H 0.094 0.906 4 C -0.158 4.158 5 C -0.029 4.029 6 N -0.135 5.135 7 C -0.152 4.152 8 C -0.208 4.208 9 N -0.266 5.266 10 C -0.037 4.037 11 C 0.034 3.966 12 C -0.561 4.561 13 H 0.036 0.964 14 C -0.183 4.183 15 N -0.584 5.584 16 Si 0.774 3.226 17 H -0.178 1.178 18 H -0.205 1.205 19 H -0.173 1.173 20 C -0.070 4.070 21 H 0.077 0.923 22 H 0.088 0.912 23 H 0.086 0.914 24 H 0.131 0.869 25 H 0.079 0.921 26 H 0.116 0.884 27 H 0.095 0.905 28 H 0.202 0.798 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.080 0.920 32 H 0.105 0.895 33 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -14.564 11.573 3.242 18.883 hybrid contribution 0.337 -0.201 -0.649 0.759 sum -14.227 11.372 2.593 18.397 Atomic orbital electron populations 1.21753 0.92102 1.02546 1.03057 1.21284 0.97713 0.99123 0.92862 0.90606 1.21972 0.91194 1.01762 1.00901 1.22217 0.95238 1.02364 0.83060 1.45451 1.07283 1.51297 1.09445 1.21688 0.97561 1.10615 0.85337 1.22266 0.88428 1.09385 1.00675 1.70371 1.27877 1.22926 1.05398 1.23333 0.85604 1.01614 0.93189 1.17984 0.90976 0.96706 0.90898 1.20882 1.19027 0.94455 1.21725 0.96433 1.25943 0.98274 0.98577 0.95555 1.70048 1.36049 1.23098 1.29223 0.85629 0.78063 0.79095 0.79773 1.17752 1.20525 1.17269 1.20438 0.84758 1.01857 0.99925 0.92337 0.91168 0.91352 0.86925 0.92097 0.88432 0.90480 0.79849 0.94028 0.93467 0.92036 0.89533 0.87861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.17 71.98 0.66 -1.07 16 2 C -0.09 -1.68 2.76 -10.52 -0.03 -1.71 16 3 H 0.08 1.41 8.12 -2.39 -0.02 1.39 16 4 C -0.12 -2.64 5.21 30.73 0.16 -2.48 16 5 C 0.09 2.83 6.60 86.48 0.57 3.40 16 6 N -0.45 -17.72 3.13 -500.13 -1.57 -19.29 16 7 C -0.04 -1.29 6.57 40.73 0.27 -1.02 16 8 C -0.06 -2.41 11.84 83.30 0.99 -1.42 16 9 N -0.55 -26.95 11.27 -188.77 -2.13 -29.08 16 10 C 0.23 10.90 7.13 138.25 0.99 11.89 16 11 C 0.07 3.73 4.41 29.11 0.13 3.86 16 12 C -0.52 -31.50 9.65 25.60 0.25 -31.25 16 13 H 0.02 1.20 7.98 -2.92 -0.02 1.18 16 14 C 0.01 0.85 5.47 84.65 0.46 1.31 16 15 N -0.94 -59.61 13.96 21.45 0.30 -59.31 16 16 Si 0.95 43.61 27.47 68.60 1.88 45.50 16 17 H -0.25 -10.65 7.11 99.48 0.71 -9.95 16 18 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 19 H -0.25 -10.80 6.54 99.48 0.65 -10.15 16 20 C -0.03 -0.71 5.61 30.09 0.17 -0.54 16 21 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 22 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 23 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 24 H 0.11 1.79 8.12 -2.38 -0.02 1.77 16 25 H 0.06 1.50 8.11 -2.38 -0.02 1.48 16 26 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 27 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 28 H 0.18 5.89 8.06 -2.91 -0.02 5.87 16 29 H 0.04 2.15 7.20 -2.39 -0.02 2.13 16 30 H 0.05 2.15 7.37 -2.39 -0.02 2.14 16 31 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 32 H 0.09 1.80 8.12 -2.39 -0.02 1.78 16 33 H 0.10 1.83 8.14 -2.38 -0.02 1.81 16 Total: -1.00 -75.43 271.24 4.12 -71.32 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: 1.02 Total: 9.89 kcal Atomic # 6 Polarization: -23.63 SS G_CDS: 4.61 Total: -19.02 kcal Atomic # 7 Polarization: -104.28 SS G_CDS: -3.39 Total: -107.67 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 1.88 Total: 45.50 kcal Total: -75.43 4.12 -71.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260732391.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.349 kcal (2) G-P(sol) polarization free energy of solvation -75.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds