Wall clock time and date at job start Mon Mar 30 2020 03:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.38238 * 125.75160 * 2 1 4 4 C 1.39954 * 126.31840 * 359.91030 * 3 2 1 5 5 H 1.08000 * 119.99604 * 359.97438 * 4 3 2 6 6 C 1.40069 * 119.99884 * 180.02562 * 4 3 2 7 7 N 1.30858 * 120.00121 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 119.99564 * 179.97438 * 6 4 3 9 9 H 1.48497 * 109.47379 * 59.99865 * 8 6 4 10 10 H 1.48499 * 109.46870 * 179.97438 * 8 6 4 11 11 H 1.48493 * 109.47184 * 299.99477 * 8 6 4 12 12 C 1.39980 * 107.36487 * 179.97438 * 3 2 1 13 13 C 1.38458 * 106.92163 * 359.97438 * 12 3 2 14 14 C 1.35551 * 125.74760 * 180.02562 * 2 1 3 15 15 C 1.51031 * 128.02838 * 0.25629 * 14 2 1 16 16 N 1.47247 * 108.26470 * 163.32459 * 15 14 2 17 17 C 1.46906 * 110.99869 * 287.32757 * 16 15 14 18 18 C 1.46926 * 111.53053 * 51.66178 * 16 15 14 19 19 C 1.50936 * 128.46574 * 180.10888 * 13 12 3 20 20 H 1.08996 * 109.47055 * 269.96203 * 1 2 3 21 21 H 1.09007 * 109.47031 * 29.95223 * 1 2 3 22 22 H 1.08994 * 109.47491 * 149.95646 * 1 2 3 23 23 H 0.96993 * 120.00039 * 180.02562 * 7 6 4 24 24 H 1.08002 * 126.54190 * 180.02562 * 12 3 2 25 25 H 1.08998 * 109.70456 * 43.63276 * 15 14 2 26 26 H 1.09003 * 109.70084 * 283.01347 * 15 14 2 27 27 H 1.08992 * 109.47459 * 180.68240 * 17 16 15 28 28 H 1.09004 * 109.47040 * 300.68390 * 17 16 15 29 29 H 1.09000 * 109.47033 * 60.68343 * 17 16 15 30 30 H 1.09005 * 109.44422 * 48.15362 * 18 16 15 31 31 H 1.09002 * 109.44913 * 168.09223 * 18 16 15 32 32 H 1.09006 * 109.79090 * 44.67054 * 19 13 12 33 33 H 1.09000 * 109.84646 * 283.84728 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2727 1.1219 0.0000 4 6 1.8419 2.4534 -0.0018 5 1 0.7857 2.6792 -0.0037 6 6 2.7804 3.4932 -0.0021 7 7 4.0601 3.2196 -0.0002 8 14 2.2052 5.2704 -0.0051 9 1 1.3854 5.5275 1.2060 10 1 3.3849 6.1724 -0.0044 11 1 1.3884 5.5242 -1.2190 12 6 3.6011 0.6803 0.0006 13 6 3.5657 -0.7038 0.0015 14 6 2.2570 -1.1001 -0.0005 15 6 1.8350 -2.5503 -0.0065 16 7 2.9936 -3.3664 -0.4060 17 6 3.2780 -3.2111 -1.8389 18 6 4.1792 -3.0522 0.4030 19 6 4.7231 -1.6726 0.0047 20 1 -0.3633 -0.0007 1.0276 21 1 -0.3633 0.8905 -0.5131 22 1 -0.3634 -0.8895 -0.5145 23 1 4.7100 3.9396 0.0000 24 1 4.4850 1.3009 0.0011 25 1 1.0218 -2.6935 -0.7179 26 1 1.5068 -2.8416 0.9913 27 1 4.1305 -3.8337 -2.1097 28 1 2.4063 -3.5169 -2.4175 29 1 3.5080 -2.1673 -2.0526 30 1 3.9067 -3.0451 1.4585 31 1 4.9463 -3.8074 0.2314 32 1 5.4728 -1.3496 0.7271 33 1 5.1665 -1.7227 -0.9898 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260747112.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:12 Heat of formation + Delta-G solvation = 46.233535 kcal Electronic energy + Delta-G solvation = -15294.418446 eV Core-core repulsion = 12934.507173 eV Total energy + Delta-G solvation = -2359.911273 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.84369 -36.99919 -33.43383 -32.00498 -29.46766 -28.94723 -26.94426 -25.48618 -24.38346 -21.91608 -20.68002 -19.10729 -17.18563 -16.52207 -15.48852 -14.87385 -14.50814 -14.34473 -13.94730 -13.46807 -12.82172 -12.56241 -12.17141 -11.95364 -11.64221 -11.39400 -11.27826 -11.19067 -11.11884 -10.81756 -10.60394 -10.45794 -10.22629 -9.93396 -9.47214 -9.16808 -7.77400 -6.83892 -6.61905 -6.43767 -4.04981 3.02599 3.12190 3.14213 3.69796 3.99506 4.45978 4.53436 4.65098 5.47038 5.59044 5.65765 5.73086 5.89295 6.00545 6.01272 6.08686 6.16152 6.19340 6.25312 6.31793 6.42500 6.54281 6.70032 6.86056 7.23259 7.34049 7.53249 7.57712 7.88710 8.03065 8.31395 8.44323 8.95098 9.09637 9.28336 9.44267 10.45222 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.044693 B = 0.008712 C = 0.007689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.349635 B = 3213.334639 C = 3640.706936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.471 5.471 3 C 0.211 3.789 4 C -0.452 4.452 5 H 0.066 0.934 6 C 0.072 3.928 7 N -0.802 5.802 8 Si 0.918 3.082 9 H -0.269 1.269 10 H -0.279 1.279 11 H -0.269 1.269 12 C -0.274 4.274 13 C -0.144 4.144 14 C -0.145 4.145 15 C 0.148 3.852 16 N -0.533 5.533 17 C 0.022 3.978 18 C 0.059 3.941 19 C -0.075 4.075 20 H 0.047 0.953 21 H 0.069 0.931 22 H 0.057 0.943 23 H 0.273 0.727 24 H 0.153 0.847 25 H 0.056 0.944 26 H 0.061 0.939 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.045 0.955 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.044 -6.159 -0.805 6.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.155 5.155 3 C 0.102 3.898 4 C -0.488 4.488 5 H 0.084 0.916 6 C -0.144 4.144 7 N -0.431 5.431 8 Si 0.744 3.256 9 H -0.194 1.194 10 H -0.204 1.204 11 H -0.194 1.194 12 C -0.297 4.297 13 C -0.152 4.152 14 C -0.252 4.252 15 C 0.020 3.980 16 N -0.255 5.255 17 C -0.126 4.126 18 C -0.070 4.070 19 C -0.114 4.114 20 H 0.065 0.935 21 H 0.088 0.912 22 H 0.076 0.924 23 H 0.085 0.915 24 H 0.170 0.830 25 H 0.075 0.925 26 H 0.079 0.921 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.064 0.936 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.282 -6.622 -0.724 7.042 hybrid contribution -0.172 1.805 -0.136 1.819 sum -2.454 -4.817 -0.859 5.474 Atomic orbital electron populations 1.21456 0.80812 1.01787 1.00744 1.43461 1.03547 1.05860 1.62677 1.18226 0.88240 0.85147 0.98147 1.18354 0.93767 0.88751 1.47910 0.91573 1.25587 0.94378 1.00851 0.93540 1.69763 1.01411 1.33554 1.38333 0.86215 0.78723 0.81290 0.79387 1.19392 1.20402 1.19413 1.21410 0.96721 0.91267 1.20285 1.18972 0.91218 0.94837 1.10203 1.20143 0.90840 0.88235 1.25938 1.20300 0.92047 0.86508 0.99177 1.62571 1.05741 1.52917 1.04224 1.22330 1.00480 1.01061 0.88775 1.22160 0.91779 0.95373 0.97641 1.20577 0.96647 0.93967 1.00166 0.93475 0.91210 0.92449 0.91549 0.82979 0.92521 0.92057 0.92417 0.92586 0.93629 0.91334 0.91706 0.92150 0.92728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.84 10.75 59.85 0.64 2.48 16 2 N -0.47 -11.50 3.18 -116.52 -0.37 -11.87 16 3 C 0.21 5.88 6.69 -83.68 -0.56 5.32 16 4 C -0.45 -12.37 8.98 -38.25 -0.34 -12.71 16 5 H 0.07 1.70 7.14 -52.49 -0.37 1.33 16 6 C 0.07 1.88 5.50 -17.28 -0.10 1.79 16 7 N -0.80 -21.70 10.26 55.56 0.57 -21.13 16 8 Si 0.92 19.49 29.56 -169.99 -5.03 14.47 16 9 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 10 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 11 H -0.27 -5.63 7.11 56.52 0.40 -5.22 16 12 C -0.27 -7.70 9.76 -38.85 -0.38 -8.08 16 13 C -0.14 -3.55 5.21 -104.97 -0.55 -4.10 16 14 C -0.14 -3.38 6.27 -81.33 -0.51 -3.89 16 15 C 0.15 2.84 5.77 -4.62 -0.03 2.81 16 16 N -0.53 -9.47 5.19 -243.47 -1.26 -10.74 16 17 C 0.02 0.37 8.73 60.07 0.52 0.89 16 18 C 0.06 1.02 5.97 -3.52 -0.02 1.00 16 19 C -0.07 -1.50 5.70 -27.48 -0.16 -1.66 16 20 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 21 H 0.07 1.31 7.33 -51.92 -0.38 0.93 16 22 H 0.06 0.95 7.57 -51.93 -0.39 0.55 16 23 H 0.27 6.78 8.30 -40.82 -0.34 6.44 16 24 H 0.15 4.50 5.71 -52.49 -0.30 4.20 16 25 H 0.06 1.02 7.64 -51.93 -0.40 0.62 16 26 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 27 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.06 0.86 8.10 -51.93 -0.42 0.44 16 29 H 0.05 0.89 5.76 -51.93 -0.30 0.59 16 30 H 0.07 1.20 8.07 -51.93 -0.42 0.78 16 31 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.05 1.07 7.10 -51.93 -0.37 0.70 16 LS Contribution 262.28 15.07 3.95 3.95 Total: -1.00 -29.64 262.28 -8.21 -37.85 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -4.60 Total: 3.61 kcal Atomic # 6 Polarization: -14.68 SS G_CDS: -1.47 Total: -16.15 kcal Atomic # 7 Polarization: -42.67 SS G_CDS: -1.06 Total: -43.73 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -5.03 Total: 14.47 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -29.64 -8.21 -37.85 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260747112.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.086 kcal (2) G-P(sol) polarization free energy of solvation -29.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds