Wall clock time and date at job start Mon Mar 30 2020 03:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.38238 * 125.75160 * 2 1 4 4 C 1.39954 * 126.31840 * 359.91030 * 3 2 1 5 5 H 1.08000 * 119.99604 * 359.97438 * 4 3 2 6 6 C 1.40069 * 119.99884 * 180.02562 * 4 3 2 7 7 N 1.30858 * 120.00121 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 119.99564 * 179.97438 * 6 4 3 9 9 H 1.48497 * 109.47379 * 59.99865 * 8 6 4 10 10 H 1.48499 * 109.46870 * 179.97438 * 8 6 4 11 11 H 1.48493 * 109.47184 * 299.99477 * 8 6 4 12 12 C 1.39980 * 107.36487 * 179.97438 * 3 2 1 13 13 C 1.38458 * 106.92163 * 359.97438 * 12 3 2 14 14 C 1.35551 * 125.74760 * 180.02562 * 2 1 3 15 15 C 1.51031 * 128.02838 * 0.25629 * 14 2 1 16 16 N 1.47247 * 108.26470 * 163.32459 * 15 14 2 17 17 C 1.46906 * 110.99869 * 287.32757 * 16 15 14 18 18 C 1.46926 * 111.53053 * 51.66178 * 16 15 14 19 19 C 1.50936 * 128.46574 * 180.10888 * 13 12 3 20 20 H 1.08996 * 109.47055 * 269.96203 * 1 2 3 21 21 H 1.09007 * 109.47031 * 29.95223 * 1 2 3 22 22 H 1.08994 * 109.47491 * 149.95646 * 1 2 3 23 23 H 0.96993 * 120.00039 * 180.02562 * 7 6 4 24 24 H 1.08002 * 126.54190 * 180.02562 * 12 3 2 25 25 H 1.08998 * 109.70456 * 43.63276 * 15 14 2 26 26 H 1.09003 * 109.70084 * 283.01347 * 15 14 2 27 27 H 1.08992 * 109.47459 * 180.68240 * 17 16 15 28 28 H 1.09004 * 109.47040 * 300.68390 * 17 16 15 29 29 H 1.09000 * 109.47033 * 60.68343 * 17 16 15 30 30 H 1.09005 * 109.44422 * 48.15362 * 18 16 15 31 31 H 1.09002 * 109.44913 * 168.09223 * 18 16 15 32 32 H 1.09006 * 109.79090 * 44.67054 * 19 13 12 33 33 H 1.09000 * 109.84646 * 283.84728 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2727 1.1219 0.0000 4 6 1.8419 2.4534 -0.0018 5 1 0.7857 2.6792 -0.0037 6 6 2.7804 3.4932 -0.0021 7 7 4.0601 3.2196 -0.0002 8 14 2.2052 5.2704 -0.0051 9 1 1.3854 5.5275 1.2060 10 1 3.3849 6.1724 -0.0044 11 1 1.3884 5.5242 -1.2190 12 6 3.6011 0.6803 0.0006 13 6 3.5657 -0.7038 0.0015 14 6 2.2570 -1.1001 -0.0005 15 6 1.8350 -2.5503 -0.0065 16 7 2.9936 -3.3664 -0.4060 17 6 3.2780 -3.2111 -1.8389 18 6 4.1792 -3.0522 0.4030 19 6 4.7231 -1.6726 0.0047 20 1 -0.3633 -0.0007 1.0276 21 1 -0.3633 0.8905 -0.5131 22 1 -0.3634 -0.8895 -0.5145 23 1 4.7100 3.9396 0.0000 24 1 4.4850 1.3009 0.0011 25 1 1.0218 -2.6935 -0.7179 26 1 1.5068 -2.8416 0.9913 27 1 4.1305 -3.8337 -2.1097 28 1 2.4063 -3.5169 -2.4175 29 1 3.5080 -2.1673 -2.0526 30 1 3.9067 -3.0451 1.4585 31 1 4.9463 -3.8074 0.2314 32 1 5.4728 -1.3496 0.7271 33 1 5.1665 -1.7227 -0.9898 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260747112.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:11 Heat of formation + Delta-G solvation = 27.020638 kcal Electronic energy + Delta-G solvation = -15295.251580 eV Core-core repulsion = 12934.507173 eV Total energy + Delta-G solvation = -2360.744406 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.62948 -38.57886 -35.38443 -33.71151 -31.04787 -30.76293 -28.58662 -27.10633 -26.13393 -23.65067 -22.20907 -21.03853 -18.95381 -18.40558 -17.30469 -16.46275 -16.07726 -15.94942 -15.53163 -15.09945 -14.44368 -14.18977 -13.90907 -13.64199 -13.25767 -13.02166 -12.94174 -12.74486 -12.66465 -12.41533 -12.28389 -12.09323 -11.86716 -11.70503 -11.34113 -11.06543 -9.27301 -8.73674 -8.61097 -8.37991 -6.07866 1.32163 1.37467 1.50421 1.87443 2.21580 2.56666 2.74365 3.18615 3.45934 4.17199 4.21440 4.28529 4.41630 4.41970 4.54248 4.60705 4.68444 4.72279 4.80625 4.86208 4.96171 5.10257 5.13274 5.21733 5.30517 5.49657 5.87249 6.02396 6.10817 6.16065 6.29174 6.50283 6.92009 7.13311 7.35174 7.49130 8.52889 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.044693 B = 0.008712 C = 0.007689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.349635 B = 3213.334639 C = 3640.706936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.480 5.480 3 C 0.174 3.826 4 C -0.484 4.484 5 H 0.072 0.928 6 C 0.022 3.978 7 N -0.838 5.838 8 Si 0.996 3.004 9 H -0.261 1.261 10 H -0.271 1.271 11 H -0.261 1.261 12 C -0.316 4.316 13 C -0.174 4.174 14 C -0.128 4.128 15 C 0.151 3.849 16 N -0.524 5.524 17 C 0.024 3.976 18 C 0.065 3.935 19 C -0.071 4.071 20 H 0.061 0.939 21 H 0.068 0.932 22 H 0.089 0.911 23 H 0.278 0.722 24 H 0.125 0.875 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.082 0.918 28 H 0.071 0.929 29 H 0.011 0.989 30 H 0.068 0.932 31 H 0.098 0.902 32 H 0.056 0.944 33 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.302 -7.554 -0.928 8.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.164 5.164 3 C 0.064 3.936 4 C -0.519 4.519 5 H 0.090 0.910 6 C -0.190 4.190 7 N -0.467 5.467 8 Si 0.817 3.183 9 H -0.186 1.186 10 H -0.196 1.196 11 H -0.186 1.186 12 C -0.340 4.340 13 C -0.182 4.182 14 C -0.236 4.236 15 C 0.022 3.978 16 N -0.245 5.245 17 C -0.124 4.124 18 C -0.063 4.063 19 C -0.110 4.110 20 H 0.080 0.920 21 H 0.087 0.913 22 H 0.108 0.892 23 H 0.088 0.912 24 H 0.143 0.857 25 H 0.094 0.906 26 H 0.094 0.906 27 H 0.101 0.899 28 H 0.090 0.910 29 H 0.030 0.970 30 H 0.086 0.914 31 H 0.117 0.883 32 H 0.075 0.925 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.559 -8.042 -0.848 8.836 hybrid contribution 0.219 2.127 -0.111 2.141 sum -3.341 -5.915 -0.959 6.861 Atomic orbital electron populations 1.21733 0.77948 1.03367 1.02184 1.43807 1.05506 1.05237 1.61809 1.18520 0.89051 0.86471 0.99556 1.18709 0.94405 0.89428 1.49353 0.90951 1.26639 0.94274 1.05487 0.92592 1.69919 1.02673 1.35050 1.39025 0.85053 0.78432 0.75143 0.79705 1.18576 1.19564 1.18572 1.21410 0.96508 0.93180 1.22882 1.19409 0.93651 0.94229 1.10908 1.20976 0.90491 0.90075 1.22041 1.20483 0.93223 0.83457 1.00670 1.62650 1.05430 1.51659 1.04810 1.22370 1.02325 0.99446 0.88253 1.22199 0.92415 0.94200 0.97518 1.20608 0.95270 0.94845 1.00284 0.92003 0.91317 0.89206 0.91192 0.85724 0.90558 0.90614 0.89917 0.90982 0.97048 0.91382 0.88332 0.92526 0.92585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.29 10.75 127.77 1.37 4.67 16 2 N -0.48 -23.38 3.18 -522.57 -1.66 -25.04 16 3 C 0.17 10.01 6.69 38.97 0.26 10.27 16 4 C -0.48 -27.28 8.98 23.13 0.21 -27.08 16 5 H 0.07 3.80 7.14 -2.91 -0.02 3.78 16 6 C 0.02 1.17 5.50 85.28 0.47 1.64 16 7 N -0.84 -47.48 10.26 21.86 0.22 -47.25 16 8 Si 1.00 40.56 29.56 68.60 2.03 42.59 16 9 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 10 H -0.27 -10.56 7.11 99.48 0.71 -9.85 16 11 H -0.26 -10.21 7.11 99.48 0.71 -9.51 16 12 C -0.32 -18.70 9.76 22.74 0.22 -18.48 16 13 C -0.17 -8.74 5.21 -20.09 -0.10 -8.84 16 14 C -0.13 -5.85 6.27 41.74 0.26 -5.59 16 15 C 0.15 5.29 5.77 85.60 0.49 5.79 16 16 N -0.52 -16.87 5.19 -924.21 -4.80 -21.67 16 17 C 0.02 0.74 8.73 127.69 1.12 1.86 16 18 C 0.06 2.08 5.97 86.48 0.52 2.60 16 19 C -0.07 -2.85 5.70 30.11 0.17 -2.67 16 20 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 21 H 0.07 2.52 7.33 -2.38 -0.02 2.51 16 22 H 0.09 2.69 7.57 -2.39 -0.02 2.67 16 23 H 0.28 14.37 8.30 -92.71 -0.77 13.60 16 24 H 0.13 7.93 5.71 -2.91 -0.02 7.91 16 25 H 0.08 2.42 7.64 -2.39 -0.02 2.40 16 26 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 27 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 28 H 0.07 1.95 8.10 -2.38 -0.02 1.94 16 29 H 0.01 0.41 5.76 -2.39 -0.01 0.40 16 30 H 0.07 2.21 8.07 -2.38 -0.02 2.19 16 31 H 0.10 2.55 8.14 -2.39 -0.02 2.53 16 32 H 0.06 2.25 8.14 -2.38 -0.02 2.24 16 33 H 0.06 2.19 7.10 -2.39 -0.02 2.17 16 Total: -1.00 -66.98 262.28 1.87 -65.11 By element: Atomic # 1 Polarization: 21.01 SS G_CDS: 1.09 Total: 22.10 kcal Atomic # 6 Polarization: -40.82 SS G_CDS: 4.99 Total: -35.83 kcal Atomic # 7 Polarization: -87.72 SS G_CDS: -6.24 Total: -93.96 kcal Atomic # 14 Polarization: 40.56 SS G_CDS: 2.03 Total: 42.59 kcal Total: -66.98 1.87 -65.11 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260747112.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.126 kcal (2) G-P(sol) polarization free energy of solvation -66.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds