Wall clock time and date at job start Mon Mar 30 2020 03:20:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34947 * 126.03644 * 2 1 4 4 C 1.35320 * 107.74170 * 179.74559 * 3 2 1 5 5 C 1.50700 * 126.04092 * 180.26931 * 4 3 2 6 6 C 1.53789 * 113.61082 * 37.64441 * 5 4 3 7 7 C 1.53789 * 87.07863 * 220.01870 * 6 5 4 8 8 C 1.53776 * 87.08107 * 25.43185 * 7 6 5 9 9 C 1.39873 * 107.92079 * 0.39805 * 4 3 2 10 10 C 1.50701 * 125.89990 * 179.86282 * 9 4 3 11 11 C 1.50699 * 109.46837 * 269.71286 * 10 9 4 12 12 H 1.08002 * 120.00511 * 0.02562 * 11 10 9 13 13 C 1.37884 * 119.99783 * 179.97438 * 11 10 9 14 14 N 1.31514 * 119.99573 * 180.27665 * 13 11 10 15 15 Si 1.86800 * 119.99781 * 359.97438 * 13 11 10 16 16 H 1.48501 * 109.46758 * 89.99934 * 15 13 11 17 17 H 1.48499 * 109.47026 * 209.99782 * 15 13 11 18 18 H 1.48496 * 109.47474 * 329.99818 * 15 13 11 19 19 N 1.30838 * 108.20127 * 359.59630 * 9 4 3 20 20 H 1.09004 * 109.47381 * 269.97837 * 1 2 3 21 21 H 1.09004 * 109.47119 * 29.97565 * 1 2 3 22 22 H 1.08997 * 109.47493 * 149.97546 * 1 2 3 23 23 H 1.07994 * 126.12963 * 359.97438 * 3 2 1 24 24 H 1.08997 * 112.84820 * 168.94899 * 5 4 3 25 25 H 1.08998 * 113.61549 * 334.56590 * 6 5 4 26 26 H 1.09000 * 113.61183 * 105.46653 * 6 5 4 27 27 H 1.08996 * 113.61050 * 270.87971 * 7 6 5 28 28 H 1.08999 * 113.68428 * 139.99462 * 7 6 5 29 29 H 1.09004 * 113.61501 * 220.01575 * 8 7 6 30 30 H 1.09005 * 113.61113 * 89.11641 * 8 7 6 31 31 H 1.08992 * 109.47217 * 149.71494 * 10 9 4 32 32 H 1.09005 * 109.46566 * 29.71075 * 10 9 4 33 33 H 0.97004 * 119.99485 * 179.72881 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5437 0.6665 0.0057 5 6 4.7681 1.5451 0.0136 6 6 4.6136 2.8092 0.8758 7 6 5.3683 3.5621 -0.2327 8 6 4.8621 2.4815 -1.2026 9 6 3.5346 -0.7322 0.0001 10 6 4.7496 -1.6238 0.0006 11 6 5.1551 -1.9210 -1.4200 12 1 4.5899 -1.5055 -2.2412 13 6 6.2485 -2.7226 -1.6715 14 7 6.6056 -2.9775 -2.9113 15 14 7.2273 -3.4395 -0.2512 16 1 6.6589 -4.7587 0.1256 17 1 8.6439 -3.6103 -0.6627 18 1 7.1574 -2.5197 0.9125 19 7 2.2891 -1.1328 0.0001 20 1 -0.3634 -0.0004 1.0277 21 1 -0.3633 0.8902 -0.5135 22 1 -0.3634 -0.8897 -0.5142 23 1 1.9282 2.1193 -0.0004 24 1 5.6857 0.9906 0.2097 25 1 3.5794 3.1317 0.9965 26 1 5.1565 2.7627 1.8198 27 1 6.4505 3.5601 -0.1028 28 1 4.9684 4.5551 -0.4379 29 1 5.6057 2.1707 -1.9366 30 1 3.8959 2.7145 -1.6501 31 1 4.5158 -2.5562 0.5143 32 1 5.5688 -1.1211 0.5148 33 1 7.3771 -3.5383 -3.0882 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260880916.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:24 Heat of formation + Delta-G solvation = 66.202064 kcal Electronic energy + Delta-G solvation = -14812.670608 eV Core-core repulsion = 12453.625235 eV Total energy + Delta-G solvation = -2359.045372 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.13100 -39.12554 -35.67680 -34.12989 -31.51034 -30.87866 -27.70201 -26.30457 -25.55070 -24.20474 -21.94640 -20.32039 -19.59001 -18.98364 -17.74521 -16.40099 -16.13113 -16.10247 -15.42099 -15.17777 -14.70170 -14.14972 -13.80935 -13.53391 -13.33303 -13.16837 -13.01293 -12.74455 -12.46490 -12.31448 -11.92138 -11.89922 -11.62762 -11.21623 -11.16725 -10.81710 -10.73475 -9.94386 -8.98947 -8.29157 -6.33595 1.10541 1.36584 1.38423 1.50632 1.87504 1.98791 2.36009 3.04625 3.75169 3.87986 4.00265 4.06256 4.13777 4.34316 4.39728 4.48873 4.69265 4.73285 4.80910 4.84433 4.97461 4.98390 5.03441 5.18258 5.23195 5.27739 5.39882 5.51973 5.61346 5.78403 5.85119 6.27176 6.39751 6.68910 7.00711 7.28015 8.87931 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.022007 B = 0.010208 C = 0.007901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.011456 B = 2742.338537 C = 3543.126379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.389 5.389 3 C 0.061 3.939 4 C -0.238 4.238 5 C -0.041 4.041 6 C -0.118 4.118 7 C -0.127 4.127 8 C -0.136 4.136 9 C 0.089 3.911 10 C 0.066 3.934 11 C -0.509 4.509 12 H 0.019 0.981 13 C 0.010 3.990 14 N -0.948 5.948 15 Si 0.950 3.050 16 H -0.269 1.269 17 H -0.277 1.277 18 H -0.243 1.243 19 N -0.351 5.351 20 H 0.089 0.911 21 H 0.118 0.882 22 H 0.078 0.922 23 H 0.212 0.788 24 H 0.069 0.931 25 H 0.096 0.904 26 H 0.069 0.931 27 H 0.079 0.921 28 H 0.087 0.913 29 H 0.041 0.959 30 H 0.082 0.918 31 H 0.021 0.979 32 H 0.045 0.955 33 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.206 13.881 9.282 18.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.171 5.171 3 C -0.085 4.085 4 C -0.249 4.249 5 C -0.061 4.061 6 C -0.156 4.156 7 C -0.165 4.165 8 C -0.174 4.174 9 C -0.076 4.076 10 C 0.026 3.974 11 C -0.548 4.548 12 H 0.038 0.962 13 C -0.187 4.187 14 N -0.589 5.589 15 Si 0.772 3.228 16 H -0.194 1.194 17 H -0.202 1.202 18 H -0.166 1.166 19 N -0.174 5.174 20 H 0.107 0.893 21 H 0.136 0.864 22 H 0.096 0.904 23 H 0.229 0.771 24 H 0.087 0.913 25 H 0.114 0.886 26 H 0.088 0.912 27 H 0.097 0.903 28 H 0.106 0.894 29 H 0.060 0.940 30 H 0.101 0.899 31 H 0.039 0.961 32 H 0.063 0.937 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.087 12.795 9.183 18.183 hybrid contribution 1.017 -0.356 -0.245 1.105 sum -8.070 12.439 8.939 17.313 Atomic orbital electron populations 1.22119 0.72135 1.05470 1.04468 1.48737 1.07714 1.03332 1.57334 1.22616 0.89745 0.94303 1.01860 1.20091 0.95812 0.92336 1.16668 1.20798 0.93806 0.93219 0.98275 1.22978 1.01548 0.93829 0.97210 1.22760 1.00318 0.97859 0.95532 1.22997 1.01118 0.96910 0.96345 1.22528 0.93071 0.95191 0.96826 1.17974 0.89867 0.93403 0.96113 1.20914 1.12529 1.30262 0.91103 0.96230 1.25924 0.98041 0.96035 0.98670 1.70055 1.27996 1.39488 1.21324 0.85672 0.77688 0.79603 0.79848 1.19368 1.20195 1.16595 1.77227 1.02254 1.09664 1.28300 0.89298 0.86396 0.90352 0.77105 0.91261 0.88589 0.91199 0.90276 0.89396 0.93973 0.89916 0.96075 0.93673 0.92290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.02 11.47 127.77 1.47 3.49 16 2 N -0.39 -13.16 4.01 -369.55 -1.48 -14.64 16 3 C 0.06 1.87 10.49 83.54 0.88 2.75 16 4 C -0.24 -9.23 5.37 -20.14 -0.11 -9.33 16 5 C -0.04 -1.41 4.06 -11.01 -0.04 -1.46 16 6 C -0.12 -2.80 7.56 31.13 0.24 -2.56 16 7 C -0.13 -2.86 8.08 31.12 0.25 -2.61 16 8 C -0.14 -4.14 7.60 31.12 0.24 -3.90 16 9 C 0.09 4.27 6.41 43.10 0.28 4.54 16 10 C 0.07 3.45 4.38 29.10 0.13 3.58 16 11 C -0.51 -31.54 9.65 25.60 0.25 -31.30 16 12 H 0.02 1.36 7.98 -2.91 -0.02 1.34 16 13 C 0.01 0.63 5.47 84.66 0.46 1.09 16 14 N -0.95 -61.37 13.96 21.45 0.30 -61.07 16 15 Si 0.95 45.62 27.47 68.60 1.88 47.50 16 16 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 17 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 18 H -0.24 -10.75 6.54 99.48 0.65 -10.10 16 19 N -0.35 -16.22 12.58 -47.38 -0.60 -16.82 16 20 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 21 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 22 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 23 H 0.21 4.09 7.52 -2.91 -0.02 4.07 16 24 H 0.07 2.72 7.15 -2.39 -0.02 2.71 16 25 H 0.10 1.85 7.03 -2.39 -0.02 1.83 16 26 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.08 2.32 7.95 -2.38 -0.02 2.30 16 31 H 0.02 1.11 7.57 -2.39 -0.02 1.09 16 32 H 0.05 2.25 6.29 -2.38 -0.01 2.24 16 33 H 0.27 16.05 8.31 -92.71 -0.77 15.28 16 Total: -1.00 -78.14 276.09 5.16 -72.98 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: 1.03 Total: 7.77 kcal Atomic # 6 Polarization: -39.75 SS G_CDS: 4.03 Total: -35.72 kcal Atomic # 7 Polarization: -90.75 SS G_CDS: -1.78 Total: -92.53 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 1.88 Total: 47.50 kcal Total: -78.14 5.16 -72.98 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260880916.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.182 kcal (2) G-P(sol) polarization free energy of solvation -78.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.980 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds