Wall clock time and date at job start Mon Mar 30 2020 02:55:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08992 * 109.42252 * 2 1 4 4 C 1.53028 * 109.37732 * 240.13819 * 2 1 3 5 5 C 1.53384 * 109.72399 * 168.23781 * 4 2 1 6 6 C 1.50886 * 108.19546 * 50.55083 * 5 4 2 7 7 C 1.34568 * 128.32721 * 163.33716 * 6 5 4 8 8 N 1.35383 * 107.60010 * 180.21245 * 7 6 5 9 9 C 1.46503 * 126.01636 * 179.97438 * 8 7 6 10 10 N 1.40311 * 107.97983 * 359.89589 * 8 7 6 11 11 C 1.30120 * 108.12390 * 0.02845 * 10 8 7 12 12 C 1.50952 * 128.28881 * 180.14082 * 11 10 8 13 13 H 1.09003 * 109.71158 * 282.95677 * 12 11 10 14 14 C 1.50694 * 109.71849 * 43.55814 * 12 11 10 15 15 H 1.08000 * 120.00563 * 119.39680 * 14 12 11 16 16 C 1.37885 * 119.99902 * 299.39844 * 14 12 11 17 17 N 1.31516 * 119.99913 * 359.97438 * 16 14 12 18 18 Si 1.86798 * 119.99766 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47353 * 269.99586 * 18 16 14 20 20 H 1.48501 * 109.47293 * 30.00037 * 18 16 14 21 21 H 1.48504 * 109.46680 * 149.99835 * 18 16 14 22 22 H 1.08998 * 109.47678 * 300.11701 * 1 2 3 23 23 H 1.09001 * 109.47099 * 60.11603 * 1 2 3 24 24 H 1.09003 * 109.47192 * 180.11322 * 1 2 3 25 25 H 1.09000 * 109.43106 * 288.31910 * 4 2 1 26 26 H 1.09001 * 109.42275 * 48.16429 * 4 2 1 27 27 H 1.09006 * 109.71546 * 170.22179 * 5 4 2 28 28 H 1.08996 * 109.72348 * 290.83020 * 5 4 2 29 29 H 1.08003 * 126.19536 * 0.09851 * 7 6 5 30 30 H 1.08999 * 109.47599 * 269.89280 * 9 8 7 31 31 H 1.08998 * 109.47188 * 29.89057 * 9 8 7 32 32 H 1.08998 * 109.46916 * 149.89257 * 9 8 7 33 33 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8924 1.0279 0.0000 4 6 2.0377 -0.7188 -1.2519 5 6 3.5429 -0.4732 -1.4153 6 6 4.2176 -0.7934 -0.1042 7 6 5.5239 -1.0164 0.1296 8 7 5.6658 -1.2690 1.4520 9 6 6.9235 -1.5662 2.1422 10 7 4.3968 -1.1945 2.0459 11 6 3.5313 -0.9097 1.1169 12 6 2.0399 -0.7207 1.2542 13 1 1.5530 -1.6919 1.3439 14 6 1.7430 0.1115 2.4749 15 1 1.2315 1.0572 2.3725 16 6 2.1245 -0.3344 3.7226 17 7 2.7469 -1.4862 3.8475 18 14 1.7571 0.6976 5.2357 19 1 2.8914 1.6210 5.4925 20 1 0.5189 1.4855 5.0088 21 1 1.5688 -0.1934 6.4087 22 1 -0.3634 0.5156 0.8889 23 1 -0.3633 0.5120 -0.8910 24 1 -0.3634 -1.0277 0.0020 25 1 1.8532 -1.7887 -1.1557 26 1 1.5111 -0.3381 -2.1271 27 1 3.9379 -1.1190 -2.1995 28 1 3.7192 0.5706 -1.6750 29 1 6.3153 -0.9990 -0.6051 30 1 7.0945 -2.6426 2.1386 31 1 7.7457 -1.0660 1.6305 32 1 6.8660 -1.2109 3.1711 33 1 3.0155 -1.7996 4.7252 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260902255.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:03 Heat of formation + Delta-G solvation = 51.617362 kcal Electronic energy + Delta-G solvation = -15437.907055 eV Core-core repulsion = 13078.229243 eV Total energy + Delta-G solvation = -2359.677812 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.80189 -38.07795 -34.84419 -33.47518 -32.41267 -29.45994 -29.33416 -26.47275 -25.61694 -23.15911 -21.47302 -21.03492 -19.36752 -18.32698 -16.97278 -16.52890 -15.99497 -15.38490 -15.04676 -14.77165 -14.30487 -14.00860 -13.67694 -13.52087 -13.19850 -12.94146 -12.77134 -12.67621 -12.43387 -12.26219 -12.06359 -11.60749 -11.37845 -11.10982 -10.99184 -10.37154 -10.22582 -9.54430 -8.75201 -7.93422 -6.05402 1.38582 1.39640 1.48553 1.50102 2.21336 2.39335 2.54962 3.36119 3.91544 4.21687 4.25413 4.36517 4.38299 4.51699 4.69507 4.74371 4.75211 4.91650 4.96405 5.12989 5.15869 5.25705 5.30646 5.35632 5.46360 5.56104 5.69146 5.71935 5.85050 6.00128 6.33830 6.45793 6.70174 6.96730 7.57094 7.63733 9.09062 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.020974 B = 0.015186 C = 0.009367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.638912 B = 1843.400659 C = 2988.479840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.075 4.075 3 H 0.049 0.951 4 C -0.106 4.106 5 C -0.026 4.026 6 C -0.278 4.278 7 C 0.033 3.967 8 N -0.429 5.429 9 C 0.109 3.891 10 N -0.259 5.259 11 C 0.079 3.921 12 C 0.121 3.879 13 H -0.001 1.001 14 C -0.540 4.540 15 H 0.052 0.948 16 C 0.023 3.977 17 N -0.864 5.864 18 Si 0.941 3.059 19 H -0.288 1.288 20 H -0.266 1.266 21 H -0.285 1.285 22 H 0.041 0.959 23 H 0.070 0.930 24 H 0.044 0.956 25 H 0.045 0.955 26 H 0.086 0.914 27 H 0.083 0.917 28 H 0.069 0.931 29 H 0.202 0.798 30 H 0.072 0.928 31 H 0.112 0.888 32 H 0.064 0.936 33 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.232 1.146 -9.658 11.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.094 4.094 3 H 0.068 0.932 4 C -0.143 4.143 5 C -0.064 4.064 6 C -0.291 4.291 7 C -0.111 4.111 8 N -0.212 5.212 9 C -0.033 4.033 10 N -0.077 5.077 11 C -0.092 4.092 12 C 0.101 3.899 13 H 0.017 0.983 14 C -0.578 4.578 15 H 0.070 0.930 16 C -0.180 4.180 17 N -0.500 5.500 18 Si 0.768 3.232 19 H -0.214 1.214 20 H -0.190 1.190 21 H -0.211 1.211 22 H 0.060 0.940 23 H 0.089 0.911 24 H 0.063 0.937 25 H 0.064 0.936 26 H 0.105 0.895 27 H 0.101 0.899 28 H 0.087 0.913 29 H 0.218 0.782 30 H 0.090 0.910 31 H 0.131 0.869 32 H 0.083 0.917 33 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 5.671 0.714 -8.186 9.984 hybrid contribution -0.070 0.404 0.722 0.830 sum 5.601 1.118 -7.464 9.399 Atomic orbital electron populations 1.21657 0.94742 1.00998 1.01125 1.21084 0.95863 0.98372 0.94118 0.93243 1.21604 0.95748 0.99630 0.97365 1.19922 0.93897 1.00925 0.91628 1.20697 0.93519 1.17384 0.97451 1.22423 0.98282 1.02979 0.87420 1.49721 1.08257 1.56658 1.06595 1.21779 0.81417 1.01998 0.98058 1.78105 0.87655 1.21968 1.19943 1.23448 0.98256 0.97025 0.90435 1.17349 0.84577 0.94324 0.93626 0.98285 1.21225 1.39075 1.05767 0.91782 0.92999 1.25637 0.95005 0.96069 1.01267 1.70152 1.37039 1.20125 1.22666 0.85834 0.78305 0.78914 0.80152 1.21422 1.19007 1.21100 0.94029 0.91081 0.93734 0.93645 0.89521 0.89889 0.91255 0.78167 0.90972 0.86938 0.91688 0.93984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.71 9.01 71.98 0.65 -4.06 16 2 C -0.08 -3.14 2.06 -10.66 -0.02 -3.16 16 3 H 0.05 2.13 8.08 -2.39 -0.02 2.11 16 4 C -0.11 -3.58 5.18 30.73 0.16 -3.43 16 5 C -0.03 -0.83 6.28 30.04 0.19 -0.64 16 6 C -0.28 -11.67 5.89 -20.08 -0.12 -11.79 16 7 C 0.03 1.19 11.46 83.30 0.95 2.15 16 8 N -0.43 -18.14 4.03 -369.82 -1.49 -19.63 16 9 C 0.11 3.28 11.47 127.77 1.47 4.74 16 10 N -0.26 -14.18 9.65 -47.09 -0.45 -14.63 16 11 C 0.08 4.14 6.25 43.46 0.27 4.42 16 12 C 0.12 6.47 1.90 -12.08 -0.02 6.45 16 13 H 0.00 -0.04 8.13 -2.39 -0.02 -0.06 16 14 C -0.54 -31.33 7.92 25.60 0.20 -31.12 16 15 H 0.05 2.96 7.38 -2.91 -0.02 2.94 16 16 C 0.02 1.36 5.12 84.66 0.43 1.80 16 17 N -0.86 -53.21 10.63 21.45 0.23 -52.98 16 18 Si 0.94 46.50 29.54 68.60 2.03 48.52 16 19 H -0.29 -14.24 7.11 99.48 0.71 -13.53 16 20 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 21 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 22 H 0.04 1.66 7.30 -2.39 -0.02 1.64 16 23 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 24 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 25 H 0.04 1.62 8.10 -2.39 -0.02 1.60 16 26 H 0.09 2.30 8.09 -2.39 -0.02 2.28 16 27 H 0.08 2.18 8.14 -2.38 -0.02 2.16 16 28 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 29 H 0.20 5.01 8.06 -2.91 -0.02 4.99 16 30 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.11 2.35 8.14 -2.39 -0.02 2.33 16 32 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 Total: -1.00 -73.48 268.14 5.55 -67.94 By element: Atomic # 1 Polarization: 4.36 SS G_CDS: 1.07 Total: 5.44 kcal Atomic # 6 Polarization: -38.81 SS G_CDS: 4.16 Total: -34.65 kcal Atomic # 7 Polarization: -85.53 SS G_CDS: -1.72 Total: -87.25 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 2.03 Total: 48.52 kcal Total: -73.48 5.55 -67.94 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260902255.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.554 kcal (2) G-P(sol) polarization free energy of solvation -73.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds