Wall clock time and date at job start Mon Mar 30 2020 02:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.42400 * 2 1 4 4 C 1.53028 * 109.42751 * 119.88720 * 2 1 3 5 5 C 1.53385 * 109.71825 * 191.82986 * 4 2 1 6 6 C 1.50883 * 108.18572 * 309.46368 * 5 4 2 7 7 C 1.34575 * 128.32376 * 196.65971 * 6 5 4 8 8 N 1.35200 * 107.62007 * 179.72826 * 7 6 5 9 9 C 1.46501 * 126.00055 * 180.02562 * 8 7 6 10 10 N 1.40312 * 107.99178 * 0.04575 * 8 7 6 11 11 C 1.30134 * 108.12242 * 0.03383 * 10 8 7 12 12 C 1.50947 * 128.27846 * 179.73522 * 11 10 8 13 13 H 1.08994 * 109.72038 * 77.03606 * 12 11 10 14 14 C 1.50701 * 109.71804 * 316.38834 * 12 11 10 15 15 H 1.07999 * 120.00441 * 240.00294 * 14 12 11 16 16 C 1.37876 * 119.99872 * 60.00497 * 14 12 11 17 17 N 1.31513 * 119.99814 * 359.97438 * 16 14 12 18 18 Si 1.86797 * 120.00255 * 179.97438 * 16 14 12 19 19 H 1.48505 * 109.46902 * 89.99832 * 18 16 14 20 20 H 1.48498 * 109.47279 * 209.99798 * 18 16 14 21 21 H 1.48497 * 109.47193 * 330.00262 * 18 16 14 22 22 H 1.09005 * 109.46734 * 300.11027 * 1 2 3 23 23 H 1.08997 * 109.46899 * 60.10912 * 1 2 3 24 24 H 1.09001 * 109.46817 * 180.11112 * 1 2 3 25 25 H 1.09004 * 109.42846 * 71.75731 * 4 2 1 26 26 H 1.09001 * 109.42969 * 311.90799 * 4 2 1 27 27 H 1.08995 * 109.71970 * 189.78910 * 5 4 2 28 28 H 1.09004 * 109.75538 * 69.15351 * 5 4 2 29 29 H 1.08002 * 126.18929 * 359.70139 * 7 6 5 30 30 H 1.08993 * 109.46995 * 270.00123 * 9 8 7 31 31 H 1.08998 * 109.47284 * 30.01220 * 9 8 7 32 32 H 1.09006 * 109.46215 * 150.00577 * 9 8 7 33 33 H 0.97002 * 120.00137 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8925 1.0280 0.0000 4 6 2.0390 -0.7191 1.2512 5 6 3.5440 -0.4714 1.4143 6 6 4.2184 -0.7894 0.1026 7 6 5.5250 -1.0102 -0.1320 8 7 5.6668 -1.2623 -1.4527 9 6 6.9250 -1.5572 -2.1428 10 7 4.3974 -1.1913 -2.0462 11 6 3.5315 -0.9074 -1.1172 12 6 2.0401 -0.7196 -1.2548 13 1 1.5539 -1.6909 -1.3451 14 6 1.7430 0.1139 -2.4747 15 1 1.2221 1.0544 -2.3725 16 6 2.1362 -0.3243 -3.7215 17 7 2.7710 -1.4694 -3.8460 18 14 1.7674 0.7083 -5.2337 19 1 2.8938 1.6439 -5.4809 20 1 1.5952 -0.1810 -6.4104 21 1 0.5201 1.4831 -5.0119 22 1 -0.3633 0.5156 0.8891 23 1 -0.3633 0.5121 -0.8909 24 1 -0.3633 -1.0277 0.0020 25 1 1.8562 -1.7893 1.1540 26 1 1.5121 -0.3400 2.1269 27 1 3.9402 -1.1174 2.1977 28 1 3.7195 0.5724 1.6746 29 1 6.3171 -0.9893 0.6019 30 1 7.3752 -0.6275 -2.4905 31 1 7.6078 -2.0570 -1.4558 32 1 6.7278 -2.2067 -2.9957 33 1 3.0473 -1.7779 -4.7231 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260902258.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:06 Heat of formation + Delta-G solvation = 72.355378 kcal Electronic energy + Delta-G solvation = -15441.771580 eV Core-core repulsion = 13082.993036 eV Total energy + Delta-G solvation = -2358.778544 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.15320 -36.44273 -32.89110 -31.94733 -30.63886 -27.92889 -27.51516 -24.80263 -23.84725 -21.55889 -19.81684 -19.37127 -17.68284 -16.29024 -15.38410 -14.58891 -14.36497 -13.84524 -13.45855 -13.16879 -12.64117 -12.48181 -12.04924 -11.96277 -11.58586 -11.34254 -10.96957 -10.84172 -10.72539 -10.65828 -10.26631 -9.89027 -9.71141 -9.32011 -9.24462 -8.48085 -8.18961 -7.73119 -7.14322 -5.78254 -3.84847 3.07091 3.40180 3.46262 3.48855 3.68936 4.25043 4.59730 5.29095 5.51533 5.58911 5.72867 5.75055 5.78182 5.82575 5.94684 6.20706 6.27982 6.37541 6.44855 6.60532 6.70960 6.73551 6.83659 6.89077 7.10519 7.17274 7.28215 7.41628 7.83935 8.00196 8.13854 8.26816 8.50583 9.09116 9.39227 9.76966 11.25492 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.020969 B = 0.015222 C = 0.009376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.992363 B = 1839.009017 C = 2985.644986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.079 4.079 3 H 0.059 0.941 4 C -0.111 4.111 5 C -0.030 4.030 6 C -0.256 4.256 7 C 0.018 3.982 8 N -0.422 5.422 9 C 0.116 3.884 10 N -0.196 5.196 11 C 0.112 3.888 12 C 0.126 3.874 13 H 0.040 0.960 14 C -0.526 4.526 15 H 0.057 0.943 16 C 0.070 3.930 17 N -0.838 5.838 18 Si 0.883 3.117 19 H -0.285 1.285 20 H -0.289 1.289 21 H -0.275 1.275 22 H 0.034 0.966 23 H 0.061 0.939 24 H 0.045 0.955 25 H 0.056 0.944 26 H 0.049 0.951 27 H 0.052 0.948 28 H 0.055 0.945 29 H 0.148 0.852 30 H 0.056 0.944 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.071 0.213 7.592 8.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.098 4.098 3 H 0.078 0.922 4 C -0.149 4.149 5 C -0.068 4.068 6 C -0.268 4.268 7 C -0.126 4.126 8 N -0.204 5.204 9 C -0.027 4.027 10 N -0.012 5.012 11 C -0.060 4.060 12 C 0.106 3.894 13 H 0.058 0.942 14 C -0.564 4.564 15 H 0.075 0.925 16 C -0.135 4.135 17 N -0.473 5.473 18 Si 0.712 3.288 19 H -0.211 1.211 20 H -0.215 1.215 21 H -0.200 1.200 22 H 0.053 0.947 23 H 0.080 0.920 24 H 0.064 0.936 25 H 0.075 0.925 26 H 0.068 0.932 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.165 0.835 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.098 0.902 33 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 4.522 -0.223 6.117 7.610 hybrid contribution 0.195 0.713 -0.080 0.744 sum 4.717 0.490 6.037 7.677 Atomic orbital electron populations 1.21707 0.96125 1.00820 1.00370 1.21167 0.94632 0.99408 0.94637 0.92226 1.21644 0.94799 1.00616 0.97818 1.19830 0.94723 0.99430 0.92845 1.20183 0.92750 1.16764 0.97145 1.21632 0.97542 1.05782 0.87622 1.49446 1.08289 1.57191 1.05480 1.21428 0.82589 1.00844 0.97827 1.78361 0.85178 1.20164 1.17518 1.23385 0.98335 0.95868 0.88382 1.17409 0.83711 0.96265 0.91983 0.94210 1.20906 1.38849 1.06221 0.90430 0.92467 1.24937 0.94956 0.95036 0.98603 1.69956 1.35449 1.19155 1.22738 0.86745 0.78447 0.80369 0.83258 1.21121 1.21478 1.20036 0.94741 0.91975 0.93610 0.92537 0.93209 0.92971 0.92682 0.83487 0.92565 0.91437 0.90206 0.93342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.48 9.02 37.16 0.34 -2.15 16 2 C -0.08 -1.66 2.06 -90.41 -0.19 -1.85 16 3 H 0.06 1.30 8.07 -51.93 -0.42 0.88 16 4 C -0.11 -2.00 5.18 -26.52 -0.14 -2.14 16 5 C -0.03 -0.53 6.28 -27.59 -0.17 -0.71 16 6 C -0.26 -5.58 5.89 -104.98 -0.62 -6.19 16 7 C 0.02 0.35 11.45 -17.36 -0.20 0.15 16 8 N -0.42 -9.17 4.02 -68.29 -0.27 -9.45 16 9 C 0.12 1.87 11.47 59.85 0.69 2.55 16 10 N -0.20 -5.25 9.58 33.75 0.32 -4.93 16 11 C 0.11 2.89 6.25 -82.34 -0.51 2.37 16 12 C 0.13 3.25 1.92 -92.61 -0.18 3.07 16 13 H 0.04 1.12 8.13 -51.93 -0.42 0.69 16 14 C -0.53 -14.70 7.93 -34.44 -0.27 -14.97 16 15 H 0.06 1.58 7.36 -52.49 -0.39 1.19 16 16 C 0.07 2.00 5.12 -17.82 -0.09 1.91 16 17 N -0.84 -24.72 10.55 55.43 0.58 -24.13 16 18 Si 0.88 22.02 29.54 -169.99 -5.02 17.00 16 19 H -0.28 -7.19 7.11 56.52 0.40 -6.78 16 20 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 23 H 0.06 1.23 7.27 -51.93 -0.38 0.85 16 24 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 25 H 0.06 1.04 8.10 -51.93 -0.42 0.62 16 26 H 0.05 0.76 8.09 -51.93 -0.42 0.34 16 27 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.15 2.26 8.06 -52.49 -0.42 1.83 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 33 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 267.96 15.07 4.04 4.04 Total: -1.00 -32.08 267.96 -6.66 -38.74 By element: Atomic # 1 Polarization: 1.64 SS G_CDS: -4.96 Total: -3.32 kcal Atomic # 6 Polarization: -16.60 SS G_CDS: -1.35 Total: -17.94 kcal Atomic # 7 Polarization: -39.14 SS G_CDS: 0.63 Total: -38.51 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -32.08 -6.66 -38.74 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260902258.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.095 kcal (2) G-P(sol) polarization free energy of solvation -32.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds