Wall clock time and date at job start Mon Mar 30 2020 03:34:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30896 * 1 3 3 Si 1.86794 * 120.00044 * 2 1 4 4 H 1.48503 * 109.47156 * 269.99731 * 3 2 1 5 5 H 1.48499 * 109.47084 * 29.99682 * 3 2 1 6 6 H 1.48494 * 109.47141 * 149.99924 * 3 2 1 7 7 C 1.39874 * 119.99789 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99804 * 162.42789 * 7 2 1 9 9 C 1.40991 * 120.00151 * 342.42839 * 7 2 1 10 10 C 1.41262 * 119.96821 * 154.52261 * 9 7 2 11 11 C 1.35717 * 120.33052 * 180.02562 * 10 9 7 12 12 C 1.40549 * 120.15103 * 359.97438 * 11 10 9 13 13 C 1.41516 * 133.29268 * 179.97438 * 12 11 10 14 14 C 1.34969 * 107.92891 * 180.02562 * 13 12 11 15 15 Cl 1.73594 * 125.17012 * 180.26714 * 14 13 12 16 16 N 1.36670 * 109.66182 * 359.97438 * 14 13 12 17 17 H 0.97001 * 125.58890 * 180.02562 * 16 14 13 18 18 C 1.38174 * 108.80944 * 0.02562 * 16 14 13 19 19 C 1.38147 * 133.23886 * 179.97438 * 18 16 14 20 20 H 0.97003 * 119.99761 * 0.02562 * 1 2 3 21 21 H 1.07996 * 119.83440 * 359.97438 * 10 9 7 22 22 H 1.08004 * 119.92721 * 180.02562 * 11 10 9 23 23 H 1.07999 * 126.03794 * 0.02562 * 13 12 11 24 24 H 1.08001 * 120.20740 * 359.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 2.4905 2.0463 -1.4001 5 1 1.4404 2.6526 0.7000 6 1 3.5404 1.4401 0.7000 7 6 2.0083 -1.2114 0.0005 8 1 3.0504 -1.2333 -0.2818 9 6 1.3527 -2.4037 0.3697 10 6 1.8213 -3.6455 -0.1139 11 6 1.1955 -4.7977 0.2364 12 6 0.0753 -4.7630 1.0845 13 6 -0.7709 -5.7651 1.6160 14 6 -1.7025 -5.1590 2.3818 15 17 -2.9635 -5.9728 3.2541 16 7 -1.4982 -3.8077 2.3714 17 1 -2.0339 -3.1521 2.8447 18 6 -0.4034 -3.5288 1.5758 19 6 0.2335 -2.3558 1.2198 20 1 -0.4850 0.8401 -0.0004 21 1 2.6814 -3.6781 -0.7662 22 1 1.5596 -5.7436 -0.1368 23 1 -0.6861 -6.8273 1.4400 24 1 -0.1267 -1.4076 1.5909 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260947945.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:09 Heat of formation + Delta-G solvation = 21.670661 kcal Electronic energy + Delta-G solvation = -12108.800479 eV Core-core repulsion = 9819.148394 eV Total energy + Delta-G solvation = -2289.652085 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 221.030 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.79582 -38.06634 -37.29918 -35.13421 -32.46216 -30.30288 -29.87849 -26.53120 -23.29054 -22.17984 -21.45418 -19.13609 -18.60940 -17.08705 -16.57967 -15.66995 -15.43715 -14.94342 -14.35302 -14.19165 -14.15575 -13.33992 -12.98561 -12.78836 -12.72164 -12.40883 -12.10441 -11.78587 -11.71388 -11.35065 -10.96936 -10.24572 -8.92811 -8.59412 -8.43148 -6.24740 0.57963 0.80843 1.16824 1.40853 1.47675 1.55593 1.97133 2.22720 2.66273 2.80477 3.75091 4.23100 4.49847 4.81268 4.84569 4.95738 5.11311 5.32531 5.38342 5.45456 5.87225 5.96991 6.03303 6.23209 6.36173 6.71782 6.76344 6.95681 7.04407 8.33977 Molecular weight = 221.03amu Principal moments of inertia in cm(-1) A = 0.051275 B = 0.007336 C = 0.006532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.940992 B = 3815.936460 C = 4285.573711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.033 3.967 3 Si 0.982 3.018 4 H -0.261 1.261 5 H -0.270 1.270 6 H -0.257 1.257 7 C -0.488 4.488 8 H 0.083 0.917 9 C 0.098 3.902 10 C -0.212 4.212 11 C -0.061 4.061 12 C -0.217 4.217 13 C -0.155 4.155 14 C 0.063 3.937 15 Cl -0.018 7.018 16 N -0.595 5.595 17 H 0.416 0.584 18 C 0.126 3.874 19 C -0.236 4.236 20 H 0.286 0.714 21 H 0.113 0.887 22 H 0.130 0.870 23 H 0.161 0.839 24 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.271 -4.718 3.520 6.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C -0.182 4.182 3 Si 0.803 3.197 4 H -0.186 1.186 5 H -0.195 1.195 6 H -0.181 1.181 7 C -0.517 4.517 8 H 0.101 0.899 9 C 0.094 3.906 10 C -0.231 4.231 11 C -0.079 4.079 12 C -0.221 4.221 13 C -0.182 4.182 14 C -0.069 4.069 15 Cl 0.010 6.990 16 N -0.204 5.204 17 H 0.254 0.746 18 C 0.020 3.980 19 C -0.260 4.260 20 H 0.097 0.903 21 H 0.131 0.869 22 H 0.148 0.852 23 H 0.179 0.821 24 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -2.693 -4.614 3.661 6.477 hybrid contribution -0.317 1.133 0.274 1.207 sum -3.010 -3.482 3.935 6.055 Atomic orbital electron populations 1.69946 1.09089 1.30367 1.35243 1.26783 0.95464 1.04609 0.91350 0.85205 0.79137 0.75878 0.79518 1.18599 1.19483 1.18098 1.19771 0.98454 0.92243 1.41234 0.89861 1.17631 0.91100 0.93201 0.88629 1.21003 1.03776 0.92741 1.05605 1.20192 0.93747 0.97887 0.96118 1.18113 1.02435 0.92340 1.09178 1.20459 0.96243 0.99216 1.02284 1.20638 0.97497 0.83262 1.05464 1.98325 1.49926 1.75654 1.75095 1.41621 1.27782 1.05695 1.45279 0.74607 1.18355 0.88934 0.96016 0.94705 1.19921 1.03904 0.93825 1.08353 0.90325 0.86890 0.85184 0.82118 0.88396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.69 10.99 21.82 0.24 -42.45 14 2 C 0.03 1.65 5.12 85.23 0.44 2.08 14 3 Si 0.98 37.47 29.59 68.60 2.03 39.50 14 4 H -0.26 -9.56 7.11 99.48 0.71 -8.86 14 5 H -0.27 -9.92 7.11 99.48 0.71 -9.21 14 6 H -0.26 -9.60 7.11 99.48 0.71 -8.89 14 7 C -0.49 -25.70 9.01 23.34 0.21 -25.49 14 8 H 0.08 4.15 7.90 -2.91 -0.02 4.13 14 9 C 0.10 5.25 5.57 -21.28 -0.12 5.14 14 10 C -0.21 -10.10 9.69 22.43 0.22 -9.88 14 11 C -0.06 -2.63 10.03 22.25 0.22 -2.41 14 12 C -0.22 -9.72 6.19 -21.18 -0.13 -9.86 14 13 C -0.15 -5.84 10.80 22.33 0.24 -5.60 14 14 C 0.06 2.28 7.71 83.19 0.64 2.92 14 15 Cl -0.02 -0.51 29.29 -2.72 -0.08 -0.59 14 16 N -0.60 -23.69 6.16 -178.40 -1.10 -24.79 14 17 H 0.42 14.51 8.96 -92.71 -0.83 13.67 14 18 C 0.13 6.04 7.24 38.85 0.28 6.32 14 19 C -0.24 -12.55 8.69 22.83 0.20 -12.35 14 20 H 0.29 13.48 8.30 -92.71 -0.77 12.71 14 21 H 0.11 4.89 8.06 -2.91 -0.02 4.87 14 22 H 0.13 4.62 8.06 -2.91 -0.02 4.60 14 23 H 0.16 4.98 8.06 -2.91 -0.02 4.96 14 24 H 0.10 5.45 6.20 -2.91 -0.02 5.43 14 Total: -1.00 -57.74 232.94 3.70 -54.04 By element: Atomic # 1 Polarization: 23.01 SS G_CDS: 0.41 Total: 23.42 kcal Atomic # 6 Polarization: -51.32 SS G_CDS: 2.20 Total: -49.12 kcal Atomic # 7 Polarization: -66.38 SS G_CDS: -0.86 Total: -67.24 kcal Atomic # 14 Polarization: 37.47 SS G_CDS: 2.03 Total: 39.50 kcal Atomic # 17 Polarization: -0.51 SS G_CDS: -0.08 Total: -0.59 kcal Total: -57.74 3.70 -54.04 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260947945.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.709 kcal (2) G-P(sol) polarization free energy of solvation -57.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds