Wall clock time and date at job start Mon Mar 30 2020 03:33:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30882 * 1 3 3 Si 1.86802 * 120.00028 * 2 1 4 4 H 1.48496 * 109.47067 * 275.41609 * 3 2 1 5 5 H 1.48499 * 109.46941 * 35.41538 * 3 2 1 6 6 H 1.48500 * 109.46912 * 155.41243 * 3 2 1 7 7 C 1.39870 * 120.00506 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99642 * 341.71495 * 7 2 1 9 9 C 1.41314 * 120.00384 * 161.70706 * 7 2 1 10 10 C 1.41148 * 120.08130 * 150.14404 * 9 7 2 11 11 C 1.36018 * 120.57250 * 180.02562 * 10 9 7 12 12 C 1.39675 * 120.38996 * 359.97438 * 11 10 9 13 13 N 1.37436 * 133.10047 * 179.97438 * 12 11 10 14 14 H 0.97003 * 124.99124 * 0.06703 * 13 12 11 15 15 C 1.36887 * 110.01482 * 180.02562 * 13 12 11 16 16 Cl 1.73600 * 125.01429 * 180.26962 * 15 13 12 17 17 C 1.34341 * 109.96922 * 359.97438 * 15 13 12 18 18 C 1.41064 * 119.80315 * 0.02562 * 12 11 10 19 19 C 1.39030 * 120.09879 * 359.97438 * 18 12 11 20 20 H 0.96998 * 120.00422 * 359.97438 * 1 2 3 21 21 H 1.08004 * 119.71424 * 359.97438 * 10 9 7 22 22 H 1.07997 * 119.80234 * 179.97438 * 11 10 9 23 23 H 1.08009 * 126.54995 * 180.02562 * 17 15 13 24 24 H 1.08001 * 120.34351 * 179.97438 * 19 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 2.3759 2.1125 -1.3938 5 1 1.5022 2.6169 0.8113 6 1 3.5929 1.4098 0.5826 7 6 2.0083 -1.2113 -0.0005 8 1 1.5092 -2.1231 0.2925 9 6 3.3679 -1.2420 -0.3847 10 6 4.2370 -2.2081 0.1662 11 6 5.5475 -2.2465 -0.1961 12 6 6.0522 -1.3289 -1.1203 13 7 7.2999 -1.1311 -1.6617 14 1 8.0864 -1.6596 -1.4544 15 6 7.2692 -0.0793 -2.5373 16 17 8.6307 0.5017 -3.4443 17 6 6.0287 0.4329 -2.5960 18 6 5.1979 -0.3564 -1.6809 19 6 3.8574 -0.3117 -1.3150 20 1 -0.4851 0.8400 0.0004 21 1 3.8584 -2.9227 0.8821 22 1 6.2016 -2.9908 0.2335 23 1 5.7051 1.2670 -3.2011 24 1 3.1999 0.4315 -1.7414 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260956886.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:43 Heat of formation + Delta-G solvation = 22.867565 kcal Electronic energy + Delta-G solvation = -12177.506095 eV Core-core repulsion = 9887.905912 eV Total energy + Delta-G solvation = -2289.600184 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 221.030 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.85044 -38.26344 -37.43885 -35.08156 -32.76772 -31.28621 -29.41823 -26.61314 -23.63171 -22.10861 -21.50680 -19.45350 -18.83158 -17.26256 -16.89283 -15.59167 -15.41833 -15.22703 -14.65928 -14.45886 -14.22253 -13.59244 -13.48339 -12.95529 -12.64772 -12.49315 -12.15601 -11.92850 -11.73656 -11.36979 -10.90225 -10.44575 -9.04281 -8.83154 -8.57986 -6.35822 0.35693 0.60078 0.87556 1.31777 1.39033 1.52656 1.75563 2.18135 2.53545 2.63462 3.52682 4.05864 4.32013 4.42409 4.68123 4.71915 4.83813 5.13306 5.28628 5.35979 5.55786 5.76362 5.90170 5.99506 6.23340 6.43729 6.68626 6.77608 6.91483 8.25581 Molecular weight = 221.03amu Principal moments of inertia in cm(-1) A = 0.042920 B = 0.008771 C = 0.007573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.226179 B = 3191.696552 C = 3696.648840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.855 5.855 2 C 0.049 3.951 3 Si 0.963 3.037 4 H -0.266 1.266 5 H -0.281 1.281 6 H -0.257 1.257 7 C -0.480 4.480 8 H 0.062 0.938 9 C 0.057 3.943 10 C -0.159 4.159 11 C -0.089 4.089 12 C 0.014 3.986 13 N -0.574 5.574 14 H 0.426 0.574 15 C 0.127 3.873 16 Cl -0.004 7.004 17 C -0.218 4.218 18 C -0.080 4.080 19 C -0.236 4.236 20 H 0.291 0.709 21 H 0.124 0.876 22 H 0.143 0.857 23 H 0.154 0.846 24 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.819 0.870 -3.379 15.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C -0.165 4.165 3 Si 0.788 3.212 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.181 1.181 7 C -0.511 4.511 8 H 0.080 0.920 9 C 0.054 3.946 10 C -0.179 4.179 11 C -0.109 4.109 12 C -0.091 4.091 13 N -0.183 5.183 14 H 0.266 0.734 15 C -0.009 4.009 16 Cl 0.024 6.976 17 C -0.247 4.247 18 C -0.084 4.084 19 C -0.257 4.257 20 H 0.101 0.899 21 H 0.142 0.858 22 H 0.161 0.839 23 H 0.172 0.828 24 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 14.777 0.923 -3.409 15.193 hybrid contribution 0.093 0.445 -0.002 0.455 sum 14.870 1.368 -3.411 15.317 Atomic orbital electron populations 1.69751 1.08917 1.31054 1.38527 1.26685 0.95242 1.03830 0.90694 0.85498 0.79457 0.77292 0.78985 1.19229 1.20774 1.18076 1.19372 0.94421 0.95560 1.41701 0.91971 1.17713 0.92991 0.92697 0.91176 1.20948 0.92848 1.01750 1.02346 1.19755 0.95459 0.98332 0.97401 1.18013 0.84679 1.02331 1.04067 1.41208 1.09872 1.29105 1.38119 0.73430 1.20543 0.90019 0.93738 0.96604 1.98371 1.42106 1.86227 1.70852 1.21557 0.90841 1.05328 1.06934 1.19062 0.93405 0.97110 0.98823 1.20340 0.94118 1.06028 1.05230 0.89915 0.85823 0.83904 0.82798 0.89050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -47.87 13.93 21.81 0.30 -47.57 14 2 C 0.05 2.68 5.40 85.23 0.46 3.14 14 3 Si 0.96 44.94 24.52 68.60 1.68 46.62 14 4 H -0.27 -12.08 6.70 99.48 0.67 -11.41 14 5 H -0.28 -12.27 7.11 99.48 0.71 -11.57 14 6 H -0.26 -12.32 6.87 99.48 0.68 -11.64 14 7 C -0.48 -26.98 9.56 23.42 0.22 -26.76 14 8 H 0.06 3.69 8.06 -2.91 -0.02 3.66 14 9 C 0.06 2.91 5.11 -21.29 -0.11 2.80 14 10 C -0.16 -6.91 9.69 22.47 0.22 -6.69 14 11 C -0.09 -3.29 9.99 22.10 0.22 -3.07 14 12 C 0.01 0.52 7.28 39.31 0.29 0.81 14 13 N -0.57 -17.20 6.05 -178.17 -1.08 -18.28 14 14 H 0.43 9.37 8.96 -92.71 -0.83 8.54 14 15 C 0.13 3.89 7.68 83.01 0.64 4.53 14 16 Cl 0.00 -0.09 29.28 -2.72 -0.08 -0.17 14 17 C -0.22 -8.02 11.04 23.57 0.26 -7.76 14 18 C -0.08 -3.50 6.36 -20.20 -0.13 -3.63 14 19 C -0.24 -11.72 7.23 22.98 0.17 -11.55 14 20 H 0.29 14.72 8.30 -92.71 -0.77 13.95 14 21 H 0.12 4.92 8.06 -2.91 -0.02 4.90 14 22 H 0.14 3.98 8.06 -2.91 -0.02 3.96 14 23 H 0.15 5.10 8.06 -2.91 -0.02 5.08 14 24 H 0.09 4.66 4.73 -2.91 -0.01 4.64 14 Total: -1.00 -60.86 228.02 3.41 -57.45 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: 0.35 Total: 10.12 kcal Atomic # 6 Polarization: -50.40 SS G_CDS: 2.24 Total: -48.17 kcal Atomic # 7 Polarization: -65.08 SS G_CDS: -0.77 Total: -65.85 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 1.68 Total: 46.62 kcal Atomic # 17 Polarization: -0.09 SS G_CDS: -0.08 Total: -0.17 kcal Total: -60.86 3.41 -57.45 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260956886.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.316 kcal (2) G-P(sol) polarization free energy of solvation -60.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.449 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds