Wall clock time and date at job start Mon Mar 30 2020 02:53:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.38632 * 2 1 4 4 C 1.53018 * 109.42997 * 119.87103 * 2 1 3 5 5 C 1.53371 * 109.70291 * 191.77434 * 4 2 1 6 6 C 1.50952 * 108.20674 * 309.37894 * 5 4 2 7 7 N 1.30126 * 128.28879 * 196.65799 * 6 5 4 8 8 N 1.40317 * 108.12420 * 179.85936 * 7 6 5 9 9 C 1.46498 * 126.00594 * 180.02562 * 8 7 6 10 10 C 1.35200 * 107.99089 * 0.04092 * 8 7 6 11 11 C 1.34573 * 107.61787 * 0.03720 * 10 8 7 12 12 C 1.50886 * 128.32158 * 179.71179 * 11 10 8 13 13 H 1.08998 * 109.71752 * 77.03110 * 12 11 10 14 14 C 1.50699 * 109.72076 * 316.42046 * 12 11 10 15 15 H 1.07998 * 120.00038 * 294.90314 * 14 12 11 16 16 C 1.37879 * 119.99805 * 114.89811 * 14 12 11 17 17 N 1.31514 * 119.99993 * 5.12655 * 16 14 12 18 18 Si 1.86798 * 119.99784 * 185.12569 * 16 14 12 19 19 H 1.48491 * 109.47412 * 60.00327 * 18 16 14 20 20 H 1.48499 * 109.46902 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47150 * 299.99887 * 18 16 14 22 22 H 1.08997 * 109.46922 * 300.12718 * 1 2 3 23 23 H 1.09004 * 109.46865 * 60.12524 * 1 2 3 24 24 H 1.08991 * 109.47023 * 180.12579 * 1 2 3 25 25 H 1.09001 * 109.42368 * 71.71982 * 4 2 1 26 26 H 1.08999 * 109.42940 * 311.83142 * 4 2 1 27 27 H 1.08997 * 109.71800 * 69.06038 * 5 4 2 28 28 H 1.09009 * 109.71718 * 189.70508 * 5 4 2 29 29 H 1.08997 * 109.47117 * 90.02237 * 9 8 7 30 30 H 1.08992 * 109.47547 * 210.02655 * 9 8 7 31 31 H 1.09003 * 109.46630 * 330.02706 * 9 8 7 32 32 H 1.07998 * 126.18795 * 180.02562 * 10 8 7 33 33 H 0.97000 * 120.00209 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8918 1.0282 0.0000 4 6 2.0391 -0.7187 1.2513 5 6 3.5441 -0.4719 1.4132 6 6 4.2185 -0.7931 0.1014 7 7 5.4819 -1.0078 -0.1243 8 7 5.6421 -1.2709 -1.4933 9 6 6.9068 -1.5659 -2.1713 10 6 4.4243 -1.2040 -2.0767 11 6 3.5284 -0.9095 -1.1167 12 6 2.0378 -0.7198 -1.2545 13 1 1.5504 -1.6905 -1.3453 14 6 1.7419 0.1138 -2.4745 15 1 2.0677 1.1426 -2.5176 16 6 1.0554 -0.4370 -3.5358 17 7 0.5710 -1.6562 -3.4440 18 14 0.8132 0.5487 -5.1040 19 1 2.1372 0.9004 -5.6770 20 1 0.0483 -0.2622 -6.0851 21 1 0.0610 1.7916 -4.7963 22 1 -0.3633 0.5158 0.8888 23 1 -0.3633 0.5119 -0.8911 24 1 -0.3633 -1.0276 0.0023 25 1 1.8556 -1.7888 1.1546 26 1 1.5131 -0.3384 2.1270 27 1 3.7198 0.5725 1.6710 28 1 3.9402 -1.1166 2.1978 29 1 7.0810 -2.6418 -2.1634 30 1 6.8577 -1.2133 -3.2014 31 1 7.7228 -1.0619 -1.6533 32 1 4.2095 -1.3586 -3.1238 33 1 0.0877 -2.0436 -4.1905 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260969113.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:52 Heat of formation + Delta-G solvation = 57.806422 kcal Electronic energy + Delta-G solvation = -15256.353346 eV Core-core repulsion = 12896.943912 eV Total energy + Delta-G solvation = -2359.409434 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.47784 -36.50340 -33.10291 -32.11104 -30.48329 -29.00439 -27.05194 -24.94922 -23.90554 -21.81676 -19.80252 -19.56140 -17.83066 -16.34446 -15.68693 -14.76556 -14.51634 -14.06665 -13.49779 -13.18273 -12.76538 -12.49446 -12.14532 -12.11407 -11.67625 -11.38648 -11.19931 -10.92247 -10.77195 -10.67484 -10.17677 -10.12293 -9.78550 -9.58938 -9.20775 -8.68463 -8.43097 -8.35846 -7.15982 -5.96798 -3.99322 2.77574 3.26971 3.31560 3.36742 3.39599 3.86092 4.45866 5.05030 5.30532 5.49166 5.51080 5.64704 5.68767 5.74830 5.95885 6.13188 6.26854 6.39357 6.42924 6.60309 6.71221 6.76309 6.88746 6.98145 7.16728 7.27290 7.41203 7.57599 7.83004 7.87430 7.95374 8.04994 8.50623 8.64109 9.12425 9.62038 11.09715 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.022846 B = 0.012650 C = 0.008786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.314985 B = 2212.952516 C = 3185.942130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.079 4.079 3 H 0.051 0.949 4 C -0.112 4.112 5 C -0.029 4.029 6 C 0.059 3.941 7 N -0.317 5.317 8 N -0.403 5.403 9 C 0.114 3.886 10 C 0.052 3.948 11 C -0.181 4.181 12 C 0.102 3.898 13 H 0.076 0.924 14 C -0.497 4.497 15 H 0.050 0.950 16 C 0.067 3.933 17 N -0.893 5.893 18 Si 0.883 3.117 19 H -0.279 1.279 20 H -0.289 1.289 21 H -0.277 1.277 22 H 0.026 0.974 23 H 0.062 0.938 24 H 0.044 0.956 25 H 0.059 0.941 26 H 0.055 0.945 27 H 0.071 0.929 28 H 0.066 0.934 29 H 0.061 0.939 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.167 0.833 33 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.594 0.388 4.039 6.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.098 4.098 3 H 0.070 0.930 4 C -0.150 4.150 5 C -0.068 4.068 6 C -0.109 4.109 7 N -0.139 5.139 8 N -0.189 5.189 9 C -0.029 4.029 10 C -0.089 4.089 11 C -0.192 4.192 12 C 0.082 3.918 13 H 0.094 0.906 14 C -0.535 4.535 15 H 0.069 0.931 16 C -0.134 4.134 17 N -0.531 5.531 18 Si 0.711 3.289 19 H -0.204 1.204 20 H -0.214 1.214 21 H -0.203 1.203 22 H 0.045 0.955 23 H 0.081 0.919 24 H 0.064 0.936 25 H 0.078 0.922 26 H 0.073 0.927 27 H 0.090 0.910 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.097 0.903 31 H 0.095 0.905 32 H 0.184 0.816 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.776 0.136 4.324 8.039 hybrid contribution -0.726 0.528 -1.556 1.796 sum 6.050 0.665 2.768 6.687 Atomic orbital electron populations 1.21595 0.95993 1.00807 0.99873 1.21239 0.95053 0.98868 0.94661 0.93014 1.21703 0.93388 1.01206 0.98753 1.19992 0.94913 1.00843 0.91056 1.22386 0.90899 1.00463 0.97143 1.76738 1.18786 1.25148 0.93268 1.48338 1.06466 1.58468 1.05592 1.21555 0.83771 1.00974 0.96559 1.21946 0.83862 1.03391 0.99674 1.21059 0.99963 1.08051 0.90122 1.17619 0.84621 0.98050 0.91474 0.90600 1.20967 1.34861 0.97549 1.00143 0.93135 1.24935 0.95262 0.94909 0.98339 1.69891 1.37002 1.14670 1.31539 0.86805 0.78189 0.80257 0.83618 1.20428 1.21428 1.20259 0.95510 0.91880 0.93644 0.92219 0.92678 0.91032 0.91509 0.92065 0.90320 0.90480 0.81593 0.92942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.54 9.01 37.16 0.33 -2.20 16 2 C -0.08 -1.67 2.10 -90.46 -0.19 -1.86 16 3 H 0.05 1.12 8.07 -51.93 -0.42 0.70 16 4 C -0.11 -2.02 5.18 -26.53 -0.14 -2.16 16 5 C -0.03 -0.51 6.31 -27.57 -0.17 -0.69 16 6 C 0.06 1.26 7.10 -82.35 -0.58 0.67 16 7 N -0.32 -6.76 12.56 33.75 0.42 -6.33 16 8 N -0.40 -7.96 4.02 -68.30 -0.27 -8.24 16 9 C 0.11 1.57 11.47 59.85 0.69 2.26 16 10 C 0.05 1.15 11.00 -17.36 -0.19 0.96 16 11 C -0.18 -4.22 5.41 -104.98 -0.57 -4.79 16 12 C 0.10 2.49 2.21 -92.68 -0.21 2.28 16 13 H 0.08 2.08 6.93 -51.93 -0.36 1.72 16 14 C -0.50 -13.10 7.19 -34.44 -0.25 -13.35 16 15 H 0.05 1.36 7.82 -52.49 -0.41 0.95 16 16 C 0.07 1.78 5.45 -17.82 -0.10 1.69 16 17 N -0.89 -24.82 12.63 55.43 0.70 -24.12 16 18 Si 0.88 20.72 29.54 -169.99 -5.02 15.70 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 23 H 0.06 1.40 7.55 -51.93 -0.39 1.01 16 24 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 25 H 0.06 1.11 8.10 -51.93 -0.42 0.69 16 26 H 0.05 0.85 8.09 -51.93 -0.42 0.43 16 27 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 28 H 0.07 1.06 8.14 -51.92 -0.42 0.64 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.17 3.56 8.06 -52.49 -0.42 3.14 16 33 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 272.44 15.07 4.11 4.11 Total: -1.00 -29.64 272.44 -6.38 -36.02 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: -4.94 Total: 0.05 kcal Atomic # 6 Polarization: -15.82 SS G_CDS: -1.37 Total: -17.19 kcal Atomic # 7 Polarization: -39.54 SS G_CDS: 0.85 Total: -38.69 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -29.64 -6.38 -36.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260969113.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.830 kcal (2) G-P(sol) polarization free energy of solvation -29.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.024 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds