Wall clock time and date at job start Mon Mar 30 2020 02:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.45609 * 2 1 4 4 C 1.53107 * 109.46591 * 240.00920 * 2 1 3 5 5 C 1.53361 * 109.49870 * 169.71116 * 4 2 1 6 6 C 1.50819 * 108.38947 * 49.95655 * 5 4 2 7 7 C 1.39294 * 127.90435 * 163.33966 * 6 5 4 8 8 N 1.31062 * 108.08267 * 180.15180 * 7 6 5 9 9 N 1.40297 * 108.27076 * 0.02562 * 8 7 6 10 10 C 1.46496 * 126.09643 * 179.89730 * 9 8 7 11 11 C 1.34331 * 107.81507 * 359.93716 * 9 8 7 12 12 C 1.50825 * 128.03575 * 180.11867 * 11 9 8 13 13 H 1.09004 * 109.68216 * 283.16142 * 12 11 9 14 14 C 1.50697 * 109.71145 * 43.69765 * 12 11 9 15 15 H 1.07998 * 119.99990 * 53.61165 * 14 12 11 16 16 C 1.37881 * 119.99861 * 233.60102 * 14 12 11 17 17 N 1.31512 * 120.00160 * 5.03758 * 16 14 12 18 18 Si 1.86803 * 119.99793 * 185.03388 * 16 14 12 19 19 H 1.48503 * 109.47085 * 0.02562 * 18 16 14 20 20 H 1.48490 * 109.47236 * 120.00480 * 18 16 14 21 21 H 1.48509 * 109.47095 * 240.00444 * 18 16 14 22 22 H 1.09007 * 109.47576 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47251 * 299.98118 * 1 2 3 24 24 H 1.08999 * 109.47408 * 59.98896 * 1 2 3 25 25 H 1.08998 * 109.46720 * 289.72742 * 4 2 1 26 26 H 1.09004 * 109.45904 * 49.70653 * 4 2 1 27 27 H 1.09009 * 109.67927 * 169.66285 * 5 4 2 28 28 H 1.08993 * 109.68810 * 290.21582 * 5 4 2 29 29 H 1.08008 * 125.95920 * 0.17498 * 7 6 5 30 30 H 1.08998 * 109.47590 * 274.76843 * 10 9 8 31 31 H 1.09007 * 109.46936 * 34.77212 * 10 9 8 32 32 H 1.09002 * 109.47156 * 154.76677 * 10 9 8 33 33 H 0.96994 * 119.99810 * 174.99103 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0277 0.0000 4 6 2.0402 -0.7216 -1.2503 5 6 3.5519 -0.5023 -1.3868 6 6 4.2013 -0.8283 -0.0652 7 6 5.5480 -1.0785 0.1879 8 7 5.6828 -1.3219 1.4687 9 7 4.4178 -1.2333 2.0688 10 6 4.1198 -1.4370 3.4886 11 6 3.5281 -0.9291 1.1093 12 6 2.0408 -0.7239 1.2524 13 1 1.5444 -1.6897 1.3475 14 6 1.7584 0.1142 2.4725 15 1 2.2471 1.0693 2.5966 16 6 0.8759 -0.3382 3.4304 17 7 0.3565 -1.5423 3.3299 18 14 0.4179 0.7591 4.8712 19 1 1.1327 2.0554 4.7528 20 1 -1.0473 0.9999 4.8639 21 1 0.8041 0.0946 6.1419 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5135 0.8902 24 1 -0.3634 0.5140 -0.8899 25 1 1.8342 -1.7884 -1.1635 26 1 1.5346 -0.3245 -2.1305 27 1 3.9493 -1.1572 -2.1623 28 1 3.7501 0.5375 -1.6468 29 1 6.3426 -1.0725 -0.5436 30 1 3.9756 -2.5002 3.6807 31 1 4.9504 -1.0684 4.0906 32 1 3.2119 -0.8939 3.7509 33 1 -0.2066 -1.8883 4.0397 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260983193.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:13 Heat of formation + Delta-G solvation = 38.169772 kcal Electronic energy + Delta-G solvation = -15572.058868 eV Core-core repulsion = 13211.797925 eV Total energy + Delta-G solvation = -2360.260944 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.15644 -38.02318 -35.39165 -33.65663 -31.82599 -30.83165 -28.09539 -27.19523 -25.57748 -23.29110 -21.70049 -21.26249 -19.37095 -18.60892 -17.17790 -16.37244 -16.10114 -15.42888 -14.90898 -14.81022 -14.38753 -14.11968 -13.78231 -13.65991 -13.36005 -13.13770 -12.90343 -12.66874 -12.51339 -12.20041 -12.00671 -11.76568 -11.39293 -11.19878 -11.16014 -10.68383 -10.55451 -9.90698 -8.86609 -8.14687 -6.23907 1.26751 1.37009 1.44270 1.52197 1.94547 2.10927 2.39774 3.10863 3.95612 4.10901 4.26451 4.37565 4.45767 4.50604 4.58369 4.79245 4.83639 4.92338 4.98344 5.07049 5.12835 5.21883 5.31032 5.33037 5.43771 5.51433 5.65970 5.72487 5.80396 5.88344 6.09317 6.28646 6.46051 6.85092 7.10576 7.38218 8.90024 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.026753 B = 0.013311 C = 0.009721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.367330 B = 2103.056574 C = 2879.744984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.072 4.072 3 H 0.048 0.952 4 C -0.111 4.111 5 C -0.024 4.024 6 C -0.294 4.294 7 C 0.046 3.954 8 N -0.361 5.361 9 N -0.368 5.368 10 C 0.094 3.906 11 C 0.111 3.889 12 C 0.089 3.911 13 H 0.054 0.946 14 C -0.511 4.511 15 H 0.041 0.959 16 C 0.041 3.959 17 N -0.909 5.909 18 Si 0.934 3.066 19 H -0.272 1.272 20 H -0.280 1.280 21 H -0.276 1.276 22 H 0.035 0.965 23 H 0.036 0.964 24 H 0.062 0.938 25 H 0.045 0.955 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.068 0.932 29 H 0.209 0.791 30 H 0.059 0.941 31 H 0.082 0.918 32 H 0.109 0.891 33 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.816 1.601 -5.907 6.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.092 4.092 3 H 0.067 0.933 4 C -0.148 4.148 5 C -0.062 4.062 6 C -0.305 4.305 7 C -0.138 4.138 8 N -0.183 5.183 9 N -0.148 5.148 10 C -0.047 4.047 11 C -0.019 4.019 12 C 0.069 3.931 13 H 0.072 0.928 14 C -0.549 4.549 15 H 0.059 0.941 16 C -0.160 4.160 17 N -0.547 5.547 18 Si 0.760 3.240 19 H -0.197 1.197 20 H -0.206 1.206 21 H -0.201 1.201 22 H 0.054 0.946 23 H 0.055 0.945 24 H 0.081 0.919 25 H 0.064 0.936 26 H 0.100 0.900 27 H 0.101 0.899 28 H 0.087 0.913 29 H 0.225 0.775 30 H 0.078 0.922 31 H 0.101 0.899 32 H 0.127 0.873 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.452 1.171 -4.722 5.965 hybrid contribution -0.817 0.484 0.716 1.189 sum 2.635 1.655 -4.006 5.072 Atomic orbital electron populations 1.21486 0.95229 1.00317 1.00347 1.21155 0.95538 0.98373 0.94090 0.93305 1.21682 0.95711 0.99732 0.97687 1.19885 0.93682 1.00993 0.91627 1.20325 0.93574 1.19846 0.96796 1.23943 0.97297 0.99063 0.93475 1.77231 1.02316 1.28890 1.09836 1.48181 1.04589 1.53591 1.08395 1.22132 1.04040 1.02313 0.76258 1.22263 0.96090 0.95270 0.88307 1.17914 0.83401 0.97474 0.94312 0.92779 1.20963 1.24553 1.03903 1.05520 0.94064 1.25425 0.94960 0.95786 0.99812 1.69963 1.33819 1.17031 1.33892 0.85876 0.78309 0.79733 0.80095 1.19679 1.20602 1.20108 0.94608 0.94481 0.91888 0.93588 0.89989 0.89945 0.91320 0.77491 0.92239 0.89933 0.87264 0.92419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.51 9.03 71.98 0.65 -3.86 16 2 C -0.07 -2.90 2.12 -10.62 -0.02 -2.92 16 3 H 0.05 2.02 8.08 -2.39 -0.02 2.00 16 4 C -0.11 -3.67 5.20 30.75 0.16 -3.51 16 5 C -0.02 -0.75 6.28 30.01 0.19 -0.56 16 6 C -0.29 -11.66 5.91 -20.15 -0.12 -11.78 16 7 C 0.05 1.71 12.00 85.06 1.02 2.73 16 8 N -0.36 -15.53 12.59 -57.28 -0.72 -16.25 16 9 N -0.37 -16.89 4.00 -356.00 -1.42 -18.31 16 10 C 0.09 3.95 11.27 127.77 1.44 5.40 16 11 C 0.11 5.12 6.20 41.64 0.26 5.38 16 12 C 0.09 4.24 2.14 -12.11 -0.03 4.21 16 13 H 0.05 2.93 6.92 -2.38 -0.02 2.91 16 14 C -0.51 -25.73 5.26 25.60 0.13 -25.59 16 15 H 0.04 2.17 7.82 -2.91 -0.02 2.15 16 16 C 0.04 2.06 4.53 84.66 0.38 2.45 16 17 N -0.91 -47.82 12.62 21.45 0.27 -47.55 16 18 Si 0.93 40.23 29.54 68.60 2.03 42.26 16 19 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 20 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 21 H -0.28 -11.55 7.11 99.48 0.71 -10.84 16 22 H 0.03 1.42 8.14 -2.38 -0.02 1.40 16 23 H 0.04 1.59 7.58 -2.39 -0.02 1.57 16 24 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 25 H 0.05 1.62 8.11 -2.39 -0.02 1.60 16 26 H 0.08 2.22 8.11 -2.38 -0.02 2.21 16 27 H 0.08 2.16 8.14 -2.38 -0.02 2.14 16 28 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.21 5.69 8.06 -2.91 -0.02 5.67 16 30 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 31 H 0.08 3.04 8.14 -2.38 -0.02 3.02 16 32 H 0.11 5.03 4.53 -2.39 -0.01 5.02 16 33 H 0.27 13.38 8.32 -92.71 -0.77 12.61 16 Total: -1.00 -57.79 266.42 5.30 -52.49 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: 1.08 Total: 15.43 kcal Atomic # 6 Polarization: -32.13 SS G_CDS: 4.07 Total: -28.07 kcal Atomic # 7 Polarization: -80.24 SS G_CDS: -1.88 Total: -82.11 kcal Atomic # 14 Polarization: 40.23 SS G_CDS: 2.03 Total: 42.26 kcal Total: -57.79 5.30 -52.49 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260983193.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.656 kcal (2) G-P(sol) polarization free energy of solvation -57.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds