Wall clock time and date at job start Mon Mar 30 2020 02:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.46756 * 2 1 4 4 C 1.53108 * 109.46250 * 240.01824 * 2 1 3 5 5 C 1.53369 * 109.51040 * 169.72249 * 4 2 1 6 6 C 1.50821 * 108.38161 * 49.94710 * 5 4 2 7 7 C 1.35808 * 124.13453 * 343.45523 * 6 5 4 8 8 C 1.39246 * 107.98816 * 179.90252 * 7 6 5 9 9 N 1.31070 * 108.09446 * 0.02562 * 8 7 6 10 10 N 1.34324 * 128.03972 * 163.40006 * 6 5 4 11 11 C 1.46506 * 126.08663 * 0.11889 * 10 6 5 12 12 C 1.50840 * 124.07121 * 359.79281 * 7 6 5 13 13 H 1.08998 * 109.68457 * 103.20987 * 12 7 6 14 14 C 1.50701 * 109.67951 * 223.72845 * 12 7 6 15 15 H 1.08003 * 120.00006 * 86.65106 * 14 12 7 16 16 C 1.37876 * 120.00280 * 266.64972 * 14 12 7 17 17 N 1.31522 * 119.99879 * 6.00664 * 16 14 12 18 18 Si 1.86797 * 120.00234 * 186.01217 * 16 14 12 19 19 H 1.48501 * 109.46955 * 180.02562 * 18 16 14 20 20 H 1.48500 * 109.46979 * 299.99706 * 18 16 14 21 21 H 1.48496 * 109.47435 * 59.99647 * 18 16 14 22 22 H 1.09001 * 109.47081 * 300.02162 * 1 2 3 23 23 H 1.08997 * 109.46760 * 60.01361 * 1 2 3 24 24 H 1.08996 * 109.47261 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.46854 * 289.73746 * 4 2 1 26 26 H 1.09004 * 109.46102 * 49.72202 * 4 2 1 27 27 H 1.08998 * 109.68132 * 169.66953 * 5 4 2 28 28 H 1.09000 * 109.68124 * 290.18826 * 5 4 2 29 29 H 1.08004 * 125.94563 * 179.97438 * 8 7 6 30 30 H 1.09000 * 109.46996 * 89.99929 * 11 10 6 31 31 H 1.09002 * 109.46917 * 209.99862 * 11 10 6 32 32 H 1.09001 * 109.47192 * 330.00278 * 11 10 6 33 33 H 0.97000 * 119.99816 * 356.14823 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7214 -1.2504 5 6 3.5520 -0.5025 -1.3871 6 6 4.2012 -0.8288 -0.0655 7 6 3.5284 -0.9290 1.1100 8 6 4.4486 -1.2429 2.1068 9 7 5.6340 -1.3287 1.5541 10 7 5.4993 -1.0699 0.1819 11 6 6.5816 -1.0633 -0.8055 12 6 2.0410 -0.7227 1.2525 13 1 1.5439 -1.6880 1.3478 14 6 1.7595 0.1158 2.4726 15 1 1.7699 1.1934 2.4014 16 6 1.4887 -0.4927 3.6799 17 7 1.5916 -1.7987 3.7957 18 14 0.9755 0.5378 5.1509 19 1 0.7447 -0.3486 6.3198 20 1 2.0502 1.5108 5.4728 21 1 -0.2756 1.2704 4.8299 22 1 -0.3633 0.5142 0.8898 23 1 -0.3633 0.5136 -0.8901 24 1 -0.3633 -1.0276 0.0005 25 1 1.8340 -1.7882 -1.1639 26 1 1.5347 -0.3240 -2.1306 27 1 3.9490 -1.1573 -2.1628 28 1 3.7503 0.5372 -1.6474 29 1 4.2246 -1.3892 3.1531 30 1 7.0028 -0.0604 -0.8762 31 1 7.3587 -1.7628 -0.4973 32 1 6.1886 -1.3617 -1.7774 33 1 1.8034 -2.3393 3.0186 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260986615.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:00 Heat of formation + Delta-G solvation = 55.612605 kcal Electronic energy + Delta-G solvation = -15403.380655 eV Core-core repulsion = 13043.876089 eV Total energy + Delta-G solvation = -2359.504566 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.61701 -36.60183 -33.55859 -32.19686 -30.66533 -28.73037 -26.65438 -25.00254 -23.92287 -21.99225 -20.05311 -19.84924 -17.89713 -16.84814 -15.63601 -14.98785 -14.04180 -13.85491 -13.62159 -13.24910 -13.03064 -12.63815 -12.56369 -11.96048 -11.94103 -11.79669 -11.28539 -10.98248 -10.75371 -10.62292 -10.18077 -10.07160 -9.92604 -9.60761 -9.30414 -8.54024 -8.40488 -8.28531 -7.11547 -6.26704 -3.95674 2.66669 3.24240 3.48708 3.49805 3.68341 3.91156 4.59458 5.02097 5.16830 5.35042 5.43909 5.45637 5.49787 5.59679 5.84793 5.97056 6.04948 6.12130 6.18003 6.41582 6.46587 6.54632 6.75422 6.78843 6.93955 7.10778 7.24195 7.40410 7.58839 7.71760 7.91127 8.32361 8.52061 8.65841 8.97634 9.73887 11.11666 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.028124 B = 0.011659 C = 0.008896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.335033 B = 2401.097281 C = 3146.630903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.078 4.078 3 H 0.056 0.944 4 C -0.110 4.110 5 C -0.041 4.041 6 C 0.033 3.967 7 C -0.177 4.177 8 C 0.076 3.924 9 N -0.328 5.328 10 N -0.388 5.388 11 C 0.111 3.889 12 C 0.100 3.900 13 H 0.042 0.958 14 C -0.576 4.576 15 H 0.047 0.953 16 C 0.022 3.978 17 N -0.912 5.912 18 Si 1.061 2.939 19 H -0.284 1.284 20 H -0.290 1.290 21 H -0.289 1.289 22 H 0.065 0.935 23 H 0.032 0.968 24 H 0.043 0.957 25 H 0.059 0.941 26 H 0.057 0.943 27 H 0.062 0.938 28 H 0.069 0.931 29 H 0.181 0.819 30 H 0.062 0.938 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.165 1.980 -10.126 10.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.097 4.097 3 H 0.075 0.925 4 C -0.148 4.148 5 C -0.080 4.080 6 C -0.093 4.093 7 C -0.188 4.188 8 C -0.108 4.108 9 N -0.150 5.150 10 N -0.172 5.172 11 C -0.032 4.032 12 C 0.081 3.919 13 H 0.060 0.940 14 C -0.614 4.614 15 H 0.065 0.935 16 C -0.182 4.182 17 N -0.549 5.549 18 Si 0.890 3.110 19 H -0.209 1.209 20 H -0.216 1.216 21 H -0.216 1.216 22 H 0.084 0.916 23 H 0.051 0.949 24 H 0.062 0.938 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.081 0.919 28 H 0.088 0.912 29 H 0.198 0.802 30 H 0.080 0.920 31 H 0.098 0.902 32 H 0.094 0.906 33 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.137 1.661 -8.408 9.516 hybrid contribution -0.196 0.340 -1.755 1.798 sum 3.941 2.001 -10.162 11.082 Atomic orbital electron populations 1.21654 0.95918 1.00736 1.00469 1.21198 0.95014 0.99103 0.94359 0.92526 1.21674 0.93071 1.01198 0.98845 1.20129 0.95969 1.00611 0.91339 1.20883 0.84651 1.06057 0.97678 1.21018 0.99956 1.07999 0.89832 1.23659 0.89106 0.97450 1.00593 1.77364 1.23369 1.26960 0.87299 1.47987 1.05423 1.57132 1.06695 1.21557 0.89382 1.02373 0.89879 1.17562 0.85444 0.96148 0.92794 0.93971 1.21797 1.51122 0.93656 0.94851 0.93478 1.25706 0.94392 0.97506 1.00629 1.70806 1.45705 1.05113 1.33233 0.83645 0.76426 0.74942 0.75955 1.20915 1.21631 1.21552 0.91634 0.94913 0.93823 0.92175 0.92433 0.91932 0.91213 0.80231 0.91990 0.90247 0.90633 0.91685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.45 9.03 37.16 0.34 -2.11 16 2 C -0.08 -1.58 2.12 -90.38 -0.19 -1.77 16 3 H 0.06 1.19 8.08 -51.93 -0.42 0.77 16 4 C -0.11 -1.84 5.20 -26.48 -0.14 -1.98 16 5 C -0.04 -0.67 5.90 -27.63 -0.16 -0.83 16 6 C 0.03 0.67 6.73 -82.31 -0.55 0.11 16 7 C -0.18 -4.21 5.43 -105.05 -0.57 -4.78 16 8 C 0.08 1.87 11.56 -17.50 -0.20 1.67 16 9 N -0.33 -7.51 12.59 30.53 0.38 -7.13 16 10 N -0.39 -7.65 4.00 -63.86 -0.26 -7.91 16 11 C 0.11 1.50 11.32 59.85 0.68 2.17 16 12 C 0.10 2.43 1.68 -92.67 -0.16 2.28 16 13 H 0.04 1.12 6.55 -51.93 -0.34 0.78 16 14 C -0.58 -15.43 7.23 -34.44 -0.25 -15.68 16 15 H 0.05 1.29 7.82 -52.48 -0.41 0.88 16 16 C 0.02 0.60 5.45 -17.82 -0.10 0.50 16 17 N -0.91 -26.34 13.59 55.43 0.75 -25.59 16 18 Si 1.06 24.78 29.91 -169.99 -5.08 19.69 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 22 H 0.06 1.34 7.59 -51.93 -0.39 0.94 16 23 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 25 H 0.06 1.04 8.11 -51.93 -0.42 0.62 16 26 H 0.06 0.81 8.11 -51.93 -0.42 0.39 16 27 H 0.06 0.84 7.76 -51.93 -0.40 0.44 16 28 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.18 4.64 8.02 -52.48 -0.42 4.22 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.08 0.82 7.57 -51.93 -0.39 0.43 16 33 H 0.27 7.88 6.62 -40.82 -0.27 7.61 16 LS Contribution 270.02 15.07 4.07 4.07 Total: -1.00 -30.52 270.02 -6.24 -36.76 By element: Atomic # 1 Polarization: 5.32 SS G_CDS: -4.80 Total: 0.52 kcal Atomic # 6 Polarization: -19.11 SS G_CDS: -1.31 Total: -20.42 kcal Atomic # 7 Polarization: -41.51 SS G_CDS: 0.88 Total: -40.63 kcal Atomic # 14 Polarization: 24.78 SS G_CDS: -5.08 Total: 19.69 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -30.52 -6.24 -36.76 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260986615.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.373 kcal (2) G-P(sol) polarization free energy of solvation -30.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds