Wall clock time and date at job start Mon Mar 30 2020 02:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.46756 * 2 1 4 4 C 1.53108 * 109.46250 * 240.01824 * 2 1 3 5 5 C 1.53369 * 109.51040 * 169.72249 * 4 2 1 6 6 C 1.50821 * 108.38161 * 49.94710 * 5 4 2 7 7 C 1.35808 * 124.13453 * 343.45523 * 6 5 4 8 8 C 1.39246 * 107.98816 * 179.90252 * 7 6 5 9 9 N 1.31070 * 108.09446 * 0.02562 * 8 7 6 10 10 N 1.34324 * 128.03972 * 163.40006 * 6 5 4 11 11 C 1.46506 * 126.08663 * 0.11889 * 10 6 5 12 12 C 1.50840 * 124.07121 * 359.79281 * 7 6 5 13 13 H 1.08998 * 109.68457 * 103.20987 * 12 7 6 14 14 C 1.50701 * 109.67951 * 223.72845 * 12 7 6 15 15 H 1.08003 * 120.00006 * 86.65106 * 14 12 7 16 16 C 1.37876 * 120.00280 * 266.64972 * 14 12 7 17 17 N 1.31522 * 119.99879 * 6.00664 * 16 14 12 18 18 Si 1.86797 * 120.00234 * 186.01217 * 16 14 12 19 19 H 1.48501 * 109.46955 * 180.02562 * 18 16 14 20 20 H 1.48500 * 109.46979 * 299.99706 * 18 16 14 21 21 H 1.48496 * 109.47435 * 59.99647 * 18 16 14 22 22 H 1.09001 * 109.47081 * 300.02162 * 1 2 3 23 23 H 1.08997 * 109.46760 * 60.01361 * 1 2 3 24 24 H 1.08996 * 109.47261 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.46854 * 289.73746 * 4 2 1 26 26 H 1.09004 * 109.46102 * 49.72202 * 4 2 1 27 27 H 1.08998 * 109.68132 * 169.66953 * 5 4 2 28 28 H 1.09000 * 109.68124 * 290.18826 * 5 4 2 29 29 H 1.08004 * 125.94563 * 179.97438 * 8 7 6 30 30 H 1.09000 * 109.46996 * 89.99929 * 11 10 6 31 31 H 1.09002 * 109.46917 * 209.99862 * 11 10 6 32 32 H 1.09001 * 109.47192 * 330.00278 * 11 10 6 33 33 H 0.97000 * 119.99816 * 356.14823 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7214 -1.2504 5 6 3.5520 -0.5025 -1.3871 6 6 4.2012 -0.8288 -0.0655 7 6 3.5284 -0.9290 1.1100 8 6 4.4486 -1.2429 2.1068 9 7 5.6340 -1.3287 1.5541 10 7 5.4993 -1.0699 0.1819 11 6 6.5816 -1.0633 -0.8055 12 6 2.0410 -0.7227 1.2525 13 1 1.5439 -1.6880 1.3478 14 6 1.7595 0.1158 2.4726 15 1 1.7699 1.1934 2.4014 16 6 1.4887 -0.4927 3.6799 17 7 1.5916 -1.7987 3.7957 18 14 0.9755 0.5378 5.1509 19 1 0.7447 -0.3486 6.3198 20 1 2.0502 1.5108 5.4728 21 1 -0.2756 1.2704 4.8299 22 1 -0.3633 0.5142 0.8898 23 1 -0.3633 0.5136 -0.8901 24 1 -0.3633 -1.0276 0.0005 25 1 1.8340 -1.7882 -1.1639 26 1 1.5347 -0.3240 -2.1306 27 1 3.9490 -1.1573 -2.1628 28 1 3.7503 0.5372 -1.6474 29 1 4.2246 -1.3892 3.1531 30 1 7.0028 -0.0604 -0.8762 31 1 7.3587 -1.7628 -0.4973 32 1 6.1886 -1.3617 -1.7774 33 1 1.8034 -2.3393 3.0186 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260986615.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:59 Heat of formation + Delta-G solvation = 36.958883 kcal Electronic energy + Delta-G solvation = -15404.189541 eV Core-core repulsion = 13043.876089 eV Total energy + Delta-G solvation = -2360.313452 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.26552 -38.21110 -35.30646 -33.89740 -32.17875 -30.44366 -28.10717 -26.73836 -25.61785 -23.65533 -21.65713 -21.54261 -19.47309 -18.78847 -17.21321 -16.44524 -15.68918 -15.61953 -15.34675 -14.86258 -14.44208 -14.16306 -13.98434 -13.56869 -13.40032 -13.22321 -12.89265 -12.64176 -12.48657 -12.24258 -11.96141 -11.70049 -11.47786 -11.33630 -11.06639 -10.45194 -10.33500 -10.00110 -8.86719 -8.43978 -6.12561 1.02380 1.54987 1.61630 1.80452 1.81911 2.08436 2.64351 3.33431 3.76426 3.82556 4.05388 4.14207 4.40375 4.43282 4.46255 4.59231 4.65559 4.70829 4.82966 4.92682 5.03733 5.09997 5.15266 5.20690 5.21443 5.48227 5.58795 5.71649 5.79341 5.94738 6.25351 6.33562 6.43614 6.81928 6.93437 7.63532 8.93199 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.028124 B = 0.011659 C = 0.008896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.335033 B = 2401.097281 C = 3146.630903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.077 4.077 3 H 0.048 0.952 4 C -0.104 4.104 5 C -0.039 4.039 6 C 0.053 3.947 7 C -0.223 4.223 8 C 0.047 3.953 9 N -0.348 5.348 10 N -0.377 5.377 11 C 0.095 3.905 12 C 0.100 3.900 13 H 0.006 0.994 14 C -0.577 4.577 15 H 0.035 0.965 16 C -0.026 4.026 17 N -0.937 5.937 18 Si 1.101 2.899 19 H -0.288 1.288 20 H -0.281 1.281 21 H -0.270 1.270 22 H 0.037 0.963 23 H 0.070 0.930 24 H 0.038 0.962 25 H 0.051 0.949 26 H 0.098 0.902 27 H 0.104 0.896 28 H 0.094 0.906 29 H 0.150 0.850 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.114 0.886 33 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.777 3.105 -13.365 14.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.096 4.096 3 H 0.067 0.933 4 C -0.142 4.142 5 C -0.077 4.077 6 C -0.075 4.075 7 C -0.234 4.234 8 C -0.135 4.135 9 N -0.171 5.171 10 N -0.160 5.160 11 C -0.045 4.045 12 C 0.080 3.920 13 H 0.024 0.976 14 C -0.615 4.615 15 H 0.053 0.947 16 C -0.224 4.224 17 N -0.576 5.576 18 Si 0.926 3.074 19 H -0.213 1.213 20 H -0.207 1.207 21 H -0.196 1.196 22 H 0.056 0.944 23 H 0.089 0.911 24 H 0.057 0.943 25 H 0.070 0.930 26 H 0.117 0.883 27 H 0.123 0.877 28 H 0.112 0.888 29 H 0.167 0.833 30 H 0.102 0.898 31 H 0.108 0.892 32 H 0.132 0.868 33 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 4.771 2.795 -11.664 12.908 hybrid contribution -0.279 -0.004 -0.862 0.906 sum 4.491 2.791 -12.526 13.596 Atomic orbital electron populations 1.21604 0.95158 1.00577 1.00996 1.21128 0.95756 0.98377 0.94354 0.93328 1.21632 0.94039 1.00344 0.98172 1.20374 0.94850 1.02987 0.89510 1.21490 0.84633 1.02831 0.98550 1.20977 0.99687 1.11348 0.91420 1.23334 0.90530 0.99706 0.99930 1.77252 1.22498 1.27867 0.89525 1.48469 1.06775 1.54550 1.06235 1.22133 0.88280 1.04266 0.89795 1.17457 0.86195 0.94349 0.94018 0.97585 1.22054 1.50011 0.93262 0.96221 0.94670 1.26875 0.94372 0.97738 1.03407 1.70906 1.48085 1.05936 1.32637 0.83120 0.77077 0.73972 0.73276 1.21334 1.20710 1.19554 0.94350 0.91083 0.94309 0.93037 0.88346 0.87748 0.88757 0.83303 0.89821 0.89240 0.86758 0.93161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.60 9.03 71.98 0.65 -3.95 16 2 C -0.08 -3.04 2.12 -10.64 -0.02 -3.06 16 3 H 0.05 1.97 8.08 -2.39 -0.02 1.95 16 4 C -0.10 -3.09 5.20 30.75 0.16 -2.93 16 5 C -0.04 -1.05 5.90 30.01 0.18 -0.87 16 6 C 0.05 2.06 6.73 41.65 0.28 2.34 16 7 C -0.22 -10.80 5.43 -20.14 -0.11 -10.91 16 8 C 0.05 2.44 11.56 85.05 0.98 3.43 16 9 N -0.35 -16.07 12.59 -57.31 -0.72 -16.79 16 10 N -0.38 -13.95 4.00 -355.95 -1.42 -15.38 16 11 C 0.09 2.14 11.32 127.77 1.45 3.59 16 12 C 0.10 4.98 1.68 -12.12 -0.02 4.96 16 13 H 0.01 0.35 6.55 -2.39 -0.02 0.33 16 14 C -0.58 -32.20 7.23 25.60 0.19 -32.01 16 15 H 0.03 1.99 7.82 -2.91 -0.02 1.97 16 16 C -0.03 -1.46 5.45 84.65 0.46 -1.00 16 17 N -0.94 -57.24 13.59 21.45 0.29 -56.95 16 18 Si 1.10 51.48 29.91 68.60 2.05 53.53 16 19 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 20 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 21 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 22 H 0.04 1.57 7.59 -2.39 -0.02 1.55 16 23 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 24 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 25 H 0.05 1.63 8.11 -2.39 -0.02 1.61 16 26 H 0.10 2.19 8.11 -2.38 -0.02 2.17 16 27 H 0.10 2.07 7.76 -2.39 -0.02 2.05 16 28 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 29 H 0.15 8.41 8.02 -2.91 -0.02 8.38 16 30 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.11 1.75 7.57 -2.39 -0.02 1.74 16 33 H 0.26 16.08 6.62 -92.71 -0.61 15.47 16 Total: -1.00 -71.10 270.02 5.62 -65.48 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: 1.24 Total: 10.53 kcal Atomic # 6 Polarization: -44.61 SS G_CDS: 4.19 Total: -40.42 kcal Atomic # 7 Polarization: -87.26 SS G_CDS: -1.85 Total: -89.11 kcal Atomic # 14 Polarization: 51.48 SS G_CDS: 2.05 Total: 53.53 kcal Total: -71.10 5.62 -65.48 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260986615.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.435 kcal (2) G-P(sol) polarization free energy of solvation -71.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds