Wall clock time and date at job start Mon Mar 30 2020 02:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.45986 * 2 1 4 4 C 1.53102 * 109.46910 * 119.98570 * 2 1 3 5 5 C 1.53134 * 109.73810 * 190.05522 * 4 2 1 6 6 C 1.50823 * 108.46626 * 310.47079 * 5 4 2 7 7 C 1.35754 * 124.12378 * 16.13992 * 6 5 4 8 8 C 1.39292 * 107.99198 * 180.34265 * 7 6 5 9 9 N 1.31071 * 108.07737 * 359.52313 * 8 7 6 10 10 N 1.34330 * 128.03819 * 195.94209 * 6 5 4 11 11 C 1.46501 * 126.08738 * 359.84436 * 10 6 5 12 12 C 1.50846 * 124.11266 * 0.28603 * 7 6 5 13 13 H 1.08998 * 109.67877 * 256.99154 * 12 7 6 14 14 C 1.50693 * 109.68417 * 136.43453 * 12 7 6 15 15 H 1.07998 * 120.00475 * 275.29781 * 14 12 7 16 16 C 1.37880 * 120.00156 * 95.30155 * 14 12 7 17 17 N 1.31509 * 120.00233 * 185.07626 * 16 14 12 18 18 Si 1.86803 * 119.99729 * 5.07299 * 16 14 12 19 19 H 1.48506 * 109.46724 * 85.28991 * 18 16 14 20 20 H 1.48504 * 109.47108 * 205.28785 * 18 16 14 21 21 H 1.48500 * 109.47338 * 325.29086 * 18 16 14 22 22 H 1.09008 * 109.46923 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.46806 * 299.97282 * 1 2 3 24 24 H 1.08996 * 109.47624 * 59.97929 * 1 2 3 25 25 H 1.08997 * 109.46946 * 310.30721 * 4 2 1 26 26 H 1.09000 * 109.46508 * 70.29397 * 4 2 1 27 27 H 1.09003 * 110.17303 * 190.40882 * 5 4 2 28 28 H 1.08993 * 109.10913 * 69.90700 * 5 4 2 29 29 H 1.08006 * 125.96327 * 179.77821 * 8 7 6 30 30 H 1.09004 * 109.46893 * 270.00098 * 11 10 6 31 31 H 1.09005 * 109.47128 * 29.99669 * 11 10 6 32 32 H 1.08997 * 109.47110 * 150.00280 * 11 10 6 33 33 H 0.97002 * 120.00311 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0402 -0.7214 1.2503 5 6 3.5507 -0.5107 1.3887 6 6 4.2009 -0.8308 0.0659 7 6 3.5285 -0.9278 -1.1094 8 6 4.4488 -1.2418 -2.1068 9 7 5.6352 -1.3209 -1.5553 10 7 5.5002 -1.0638 -0.1828 11 6 6.5833 -1.0519 0.8036 12 6 2.0410 -0.7224 -1.2526 13 1 1.5446 -1.6882 -1.3476 14 6 1.7595 0.1161 -2.4726 15 1 1.8000 1.1934 -2.4086 16 6 1.4500 -0.4921 -3.6707 17 7 1.3024 0.2334 -4.7576 18 14 1.2403 -2.3466 -3.7500 19 1 -0.1527 -2.7035 -3.3792 20 1 1.5215 -2.8181 -5.1299 21 1 2.1853 -2.9926 -2.8040 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5134 0.8903 24 1 -0.3634 0.5141 -0.8897 25 1 1.5346 -0.3246 2.1305 26 1 1.8346 -1.7883 1.1634 27 1 3.9521 -1.1648 2.1628 28 1 3.7434 0.5297 1.6501 29 1 4.2246 -1.3897 -3.1530 30 1 6.9985 -0.0466 0.8752 31 1 6.1929 -1.3538 1.7755 32 1 7.3643 -1.7463 0.4940 33 1 1.0851 -0.1945 -5.6006 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260986616.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:02 Heat of formation + Delta-G solvation = 40.381462 kcal Electronic energy + Delta-G solvation = -15422.263879 eV Core-core repulsion = 13062.098841 eV Total energy + Delta-G solvation = -2360.165037 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.27158 -38.16332 -35.06456 -34.02466 -32.22634 -31.02089 -28.29012 -26.91504 -25.59190 -23.44649 -21.55555 -21.36067 -19.47418 -18.91130 -17.35159 -16.48085 -16.15020 -15.43982 -15.13425 -14.77798 -14.51213 -14.40986 -13.91454 -13.67243 -13.38194 -13.22562 -12.99957 -12.77171 -12.47850 -12.35865 -11.94570 -11.64451 -11.58114 -11.30115 -11.05900 -10.79383 -10.58322 -9.99316 -8.86545 -8.21127 -6.20091 1.03707 1.34098 1.38060 1.49220 1.82764 2.06461 2.39642 3.16754 3.79132 3.84660 4.08813 4.18831 4.42195 4.44570 4.49178 4.63775 4.70355 4.76046 4.87667 4.94638 5.04709 5.08617 5.16892 5.23546 5.24072 5.47921 5.57193 5.72728 5.79589 5.86211 5.91442 6.38909 6.44423 6.83101 6.93605 7.43623 8.96456 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.026473 B = 0.013115 C = 0.009995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.414973 B = 2134.405207 C = 2800.701978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.079 4.079 3 H 0.047 0.953 4 C -0.104 4.104 5 C -0.042 4.042 6 C 0.063 3.937 7 C -0.230 4.230 8 C 0.042 3.958 9 N -0.345 5.345 10 N -0.376 5.376 11 C 0.094 3.906 12 C 0.086 3.914 13 H 0.030 0.970 14 C -0.482 4.482 15 H 0.027 0.973 16 C 0.020 3.980 17 N -0.953 5.953 18 Si 0.924 3.076 19 H -0.264 1.264 20 H -0.293 1.293 21 H -0.251 1.251 22 H 0.049 0.951 23 H 0.071 0.929 24 H 0.033 0.967 25 H 0.100 0.900 26 H 0.060 0.940 27 H 0.109 0.891 28 H 0.092 0.908 29 H 0.152 0.848 30 H 0.082 0.918 31 H 0.117 0.883 32 H 0.090 0.910 33 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.696 -4.259 16.702 17.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.097 4.097 3 H 0.065 0.935 4 C -0.142 4.142 5 C -0.080 4.080 6 C -0.065 4.065 7 C -0.241 4.241 8 C -0.140 4.140 9 N -0.168 5.168 10 N -0.159 5.159 11 C -0.045 4.045 12 C 0.066 3.934 13 H 0.048 0.952 14 C -0.521 4.521 15 H 0.045 0.955 16 C -0.177 4.177 17 N -0.594 5.594 18 Si 0.749 3.251 19 H -0.189 1.189 20 H -0.220 1.220 21 H -0.175 1.175 22 H 0.068 0.932 23 H 0.090 0.910 24 H 0.052 0.948 25 H 0.118 0.882 26 H 0.079 0.921 27 H 0.127 0.873 28 H 0.110 0.890 29 H 0.169 0.831 30 H 0.100 0.900 31 H 0.135 0.865 32 H 0.108 0.892 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.040 -4.490 16.421 18.064 hybrid contribution -0.862 -0.306 -1.335 1.618 sum 5.178 -4.796 15.086 16.656 Atomic orbital electron populations 1.21662 0.95007 1.01208 1.01043 1.21124 0.95891 0.98535 0.94195 0.93457 1.21604 0.93819 1.00846 0.97948 1.20383 0.95039 1.03129 0.89462 1.21475 0.84466 1.02013 0.98568 1.20836 0.99383 1.12226 0.91663 1.23367 0.90723 1.00053 0.99889 1.77264 1.22312 1.27681 0.89565 1.48502 1.06744 1.54502 1.06191 1.22149 0.88265 1.04237 0.89873 1.17740 0.86870 0.94747 0.94006 0.95209 1.21074 1.44341 0.92866 0.93771 0.95463 1.25721 0.95117 1.01682 0.95141 1.70052 1.51486 1.37592 1.00243 0.86091 0.79860 0.82068 0.77096 1.18899 1.21981 1.17466 0.93168 0.91027 0.94750 0.88176 0.92087 0.87295 0.88977 0.83054 0.89984 0.86518 0.89172 0.92911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.54 9.03 71.98 0.65 -3.89 16 2 C -0.08 -2.91 2.13 -10.64 -0.02 -2.93 16 3 H 0.05 1.88 8.09 -2.38 -0.02 1.86 16 4 C -0.10 -2.76 5.18 30.67 0.16 -2.60 16 5 C -0.04 -1.01 5.90 29.93 0.18 -0.84 16 6 C 0.06 2.27 6.73 41.64 0.28 2.55 16 7 C -0.23 -10.38 5.42 -20.14 -0.11 -10.49 16 8 C 0.04 2.03 11.40 85.06 0.97 3.00 16 9 N -0.34 -15.00 12.59 -57.28 -0.72 -15.72 16 10 N -0.38 -13.02 4.00 -355.99 -1.42 -14.44 16 11 C 0.09 1.94 11.32 127.77 1.45 3.39 16 12 C 0.09 4.01 1.54 -12.12 -0.02 3.99 16 13 H 0.03 1.42 5.29 -2.39 -0.01 1.41 16 14 C -0.48 -27.48 7.78 25.60 0.20 -27.28 16 15 H 0.03 1.74 8.06 -2.91 -0.02 1.72 16 16 C 0.02 1.15 5.47 84.66 0.46 1.61 16 17 N -0.95 -60.40 13.96 21.45 0.30 -60.10 16 18 Si 0.92 45.48 26.34 68.60 1.81 47.29 16 19 H -0.26 -12.34 7.11 99.48 0.71 -11.63 16 20 H -0.29 -14.45 7.11 99.48 0.71 -13.74 16 21 H -0.25 -11.91 6.80 99.48 0.68 -11.23 16 22 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 23 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 24 H 0.03 1.39 7.59 -2.39 -0.02 1.37 16 25 H 0.10 1.95 8.11 -2.39 -0.02 1.93 16 26 H 0.06 1.64 8.11 -2.39 -0.02 1.62 16 27 H 0.11 1.83 7.76 -2.39 -0.02 1.81 16 28 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 29 H 0.15 7.71 7.53 -2.91 -0.02 7.69 16 30 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 31 H 0.12 1.53 7.57 -2.38 -0.02 1.51 16 32 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 Total: -1.00 -73.79 266.94 5.21 -68.59 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: 1.05 Total: 7.86 kcal Atomic # 6 Polarization: -37.68 SS G_CDS: 4.19 Total: -33.48 kcal Atomic # 7 Polarization: -88.41 SS G_CDS: -1.85 Total: -90.26 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 1.81 Total: 47.29 kcal Total: -73.79 5.21 -68.59 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260986616.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.969 kcal (2) G-P(sol) polarization free energy of solvation -73.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds