Wall clock time and date at job start Mon Mar 30 2020 02:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.46439 * 2 1 4 4 C 1.53105 * 109.46294 * 119.97944 * 2 1 3 5 5 C 1.53365 * 109.51176 * 49.73996 * 4 2 1 6 6 C 1.50828 * 108.38176 * 49.94589 * 5 4 2 7 7 C 1.35823 * 124.14149 * 343.41035 * 6 5 4 8 8 C 1.39221 * 107.99000 * 179.88101 * 7 6 5 9 9 N 1.31069 * 108.10231 * 0.07525 * 8 7 6 10 10 N 1.34326 * 128.03532 * 163.40329 * 6 5 4 11 11 C 1.46495 * 126.09144 * 0.11488 * 10 6 5 12 12 C 1.50845 * 124.05347 * 359.87879 * 7 6 5 13 13 H 1.09000 * 109.67980 * 103.13668 * 12 7 6 14 14 C 1.50700 * 109.68449 * 223.64851 * 12 7 6 15 15 H 1.08001 * 119.99454 * 34.53504 * 14 12 7 16 16 C 1.37865 * 120.00242 * 214.52680 * 14 12 7 17 17 N 1.31520 * 120.00290 * 184.71481 * 16 14 12 18 18 Si 1.86806 * 120.00019 * 4.71805 * 16 14 12 19 19 H 1.48495 * 109.47209 * 84.83057 * 18 16 14 20 20 H 1.48507 * 109.46919 * 204.82912 * 18 16 14 21 21 H 1.48501 * 109.46749 * 324.82559 * 18 16 14 22 22 H 1.08999 * 109.47598 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47186 * 299.98363 * 1 2 3 24 24 H 1.09004 * 109.46741 * 59.97841 * 1 2 3 25 25 H 1.08995 * 109.46658 * 169.75935 * 4 2 1 26 26 H 1.08998 * 109.46186 * 289.73388 * 4 2 1 27 27 H 1.09002 * 109.68060 * 169.66648 * 5 4 2 28 28 H 1.08992 * 109.68537 * 290.18937 * 5 4 2 29 29 H 1.08002 * 125.93807 * 180.02562 * 8 7 6 30 30 H 1.08998 * 109.46980 * 89.99611 * 11 10 6 31 31 H 1.08994 * 109.46869 * 209.99470 * 11 10 6 32 32 H 1.08999 * 109.47053 * 329.99911 * 11 10 6 33 33 H 0.96996 * 120.00315 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0401 -0.7213 1.2504 5 6 1.3300 -2.0738 1.3872 6 6 1.4213 -2.7947 0.0655 7 6 1.7391 -2.1937 -1.1103 8 6 1.7291 -3.1660 -2.1067 9 7 1.4153 -4.3123 -1.5540 10 7 1.2159 -4.0990 -0.1817 11 6 0.8491 -5.1171 0.8056 12 6 2.0410 -0.7226 -1.2525 13 1 3.1169 -0.5762 -1.3476 14 6 1.3449 -0.1772 -2.4728 15 1 0.3789 -0.5643 -2.7615 16 6 1.9411 0.8160 -3.2203 17 7 1.2948 1.3569 -4.2300 18 14 3.6670 1.3934 -2.7992 19 1 4.6600 0.5005 -3.4486 20 1 3.8570 2.7830 -3.2875 21 1 3.8560 1.3560 -1.3267 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5136 0.8901 24 1 -0.3633 0.5142 -0.8898 25 1 3.1147 -0.8823 1.1639 26 1 1.8340 -0.1123 2.1305 27 1 1.8151 -2.6663 2.1629 28 1 0.2837 -1.9144 1.6474 29 1 1.9421 -3.0036 -3.1530 30 1 -0.2368 -5.1799 0.8764 31 1 1.2496 -6.0829 0.4974 32 1 1.2615 -4.8461 1.7774 33 1 1.7144 2.0554 -4.7561 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260986617.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:05 Heat of formation + Delta-G solvation = 64.688661 kcal Electronic energy + Delta-G solvation = -15495.814771 eV Core-core repulsion = 13136.703772 eV Total energy + Delta-G solvation = -2359.110998 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.84818 -36.83584 -33.38424 -32.28928 -30.17416 -29.20661 -26.83484 -25.51287 -24.58991 -21.72224 -20.25839 -19.83696 -17.15907 -16.64048 -16.14963 -15.23130 -14.18204 -14.05911 -13.66691 -13.52001 -13.00798 -12.62824 -12.50031 -12.36788 -11.97155 -11.73973 -11.46222 -11.02344 -10.85812 -10.50883 -10.26733 -9.99411 -9.80918 -9.60975 -9.32787 -8.93524 -8.55515 -8.48117 -7.28489 -6.00569 -3.97518 2.53108 3.10575 3.33729 3.41948 3.43524 3.72349 4.47920 4.93399 5.10003 5.28161 5.32867 5.39141 5.49937 5.54890 5.82974 5.88591 6.06215 6.16317 6.23056 6.31503 6.44380 6.60629 6.65536 6.70015 6.91484 7.12651 7.27732 7.39190 7.46584 7.53008 7.74897 7.86593 8.46291 8.64894 9.07260 9.62910 11.12529 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.033472 B = 0.011113 C = 0.009791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.317931 B = 2518.893699 C = 2859.003599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.087 4.087 3 H 0.061 0.939 4 C -0.112 4.112 5 C -0.044 4.044 6 C 0.050 3.950 7 C -0.179 4.179 8 C 0.068 3.932 9 N -0.324 5.324 10 N -0.385 5.385 11 C 0.109 3.891 12 C 0.086 3.914 13 H 0.037 0.963 14 C -0.492 4.492 15 H 0.075 0.925 16 C 0.070 3.930 17 N -0.902 5.902 18 Si 0.872 3.128 19 H -0.277 1.277 20 H -0.292 1.292 21 H -0.265 1.265 22 H 0.043 0.957 23 H 0.025 0.975 24 H 0.072 0.928 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.062 0.938 28 H 0.077 0.923 29 H 0.181 0.819 30 H 0.064 0.936 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.955 -6.768 11.828 13.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.106 4.106 3 H 0.079 0.921 4 C -0.150 4.150 5 C -0.083 4.083 6 C -0.076 4.076 7 C -0.190 4.190 8 C -0.116 4.116 9 N -0.146 5.146 10 N -0.168 5.168 11 C -0.033 4.033 12 C 0.066 3.934 13 H 0.054 0.946 14 C -0.529 4.529 15 H 0.093 0.907 16 C -0.131 4.131 17 N -0.540 5.540 18 Si 0.699 3.301 19 H -0.203 1.203 20 H -0.218 1.218 21 H -0.189 1.189 22 H 0.062 0.938 23 H 0.045 0.955 24 H 0.091 0.909 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.080 0.920 28 H 0.095 0.905 29 H 0.198 0.802 30 H 0.083 0.917 31 H 0.099 0.901 32 H 0.096 0.904 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.721 -7.989 11.575 14.083 hybrid contribution 0.989 1.139 0.215 1.523 sum 1.709 -6.850 11.790 13.743 Atomic orbital electron populations 1.21707 0.95676 1.00644 1.00547 1.21421 0.96231 0.98813 0.94116 0.92107 1.21671 0.99601 0.94523 0.99215 1.20200 1.01354 0.95701 0.91046 1.20873 1.04415 0.84486 0.97792 1.20453 1.09860 0.98388 0.90255 1.23608 0.98052 0.89446 1.00457 1.77386 1.26099 1.23746 0.87332 1.48015 1.56024 1.06090 1.06714 1.21601 1.00699 0.91213 0.89836 1.17791 0.95703 0.85833 0.94070 0.94559 1.20859 1.05742 1.18974 1.07367 0.90728 1.25040 0.97261 0.95924 0.94851 1.69902 1.37467 1.26876 1.19773 0.86945 0.85998 0.77839 0.79274 1.20271 1.21819 1.18942 0.93823 0.95548 0.90907 0.92368 0.92365 0.91989 0.90510 0.80185 0.91724 0.90117 0.90449 0.92796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.53 8.03 37.16 0.30 -2.23 16 2 C -0.09 -1.75 2.85 -90.38 -0.26 -2.01 16 3 H 0.06 1.27 8.11 -51.93 -0.42 0.85 16 4 C -0.11 -1.82 5.55 -26.49 -0.15 -1.97 16 5 C -0.04 -0.67 5.26 -27.63 -0.15 -0.81 16 6 C 0.05 0.94 5.96 -82.30 -0.49 0.45 16 7 C -0.18 -3.88 4.97 -105.05 -0.52 -4.40 16 8 C 0.07 1.48 11.56 -17.51 -0.20 1.28 16 9 N -0.32 -6.65 12.59 30.53 0.38 -6.27 16 10 N -0.38 -6.88 4.00 -63.86 -0.26 -7.14 16 11 C 0.11 1.32 11.32 59.84 0.68 2.00 16 12 C 0.09 1.98 1.92 -92.67 -0.18 1.80 16 13 H 0.04 0.87 5.32 -51.93 -0.28 0.59 16 14 C -0.49 -13.18 6.85 -34.44 -0.24 -13.42 16 15 H 0.07 2.22 8.01 -52.49 -0.42 1.80 16 16 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 17 N -0.90 -26.94 13.96 55.43 0.77 -26.16 16 18 Si 0.87 21.10 26.99 -169.99 -4.59 16.52 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 20 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 21 H -0.26 -6.09 6.79 56.52 0.38 -5.70 16 22 H 0.04 0.85 5.61 -51.93 -0.29 0.56 16 23 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 24 H 0.07 1.64 6.94 -51.93 -0.36 1.28 16 25 H 0.06 0.95 8.11 -51.93 -0.42 0.53 16 26 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.06 0.77 7.76 -51.93 -0.40 0.37 16 28 H 0.08 1.09 6.98 -51.93 -0.36 0.73 16 29 H 0.18 3.79 8.06 -52.49 -0.42 3.36 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.08 0.74 7.57 -51.93 -0.39 0.35 16 33 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 261.64 15.07 3.94 3.94 Total: -1.00 -30.92 261.64 -5.66 -36.58 By element: Atomic # 1 Polarization: 4.60 SS G_CDS: -4.62 Total: -0.02 kcal Atomic # 6 Polarization: -16.15 SS G_CDS: -1.30 Total: -17.45 kcal Atomic # 7 Polarization: -40.48 SS G_CDS: 0.90 Total: -39.57 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.59 Total: 16.52 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -30.92 -5.66 -36.58 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260986617.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.269 kcal (2) G-P(sol) polarization free energy of solvation -30.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.580 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds